Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0002791

Physical Location & Seq

Genomic Coordinates Reverse (-)

20869097 .. 20873618

Gene Structure 4522 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG110900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 870 bp

ATGGCCTTGAGAACAGTGTCGAGGACGATAGGGAGTAAACTGTTACCCAGGTTTTGTCCTGCATCTCTATTGCATTCTCATGCCACAAGCTTTGGATTCAAGGAAGTACGGGAAGAGGAAAAAAGTCAAATGGTTGGTAATGTCTTCAGCAATGTTGCTTCAAACTATGATACAATGAATGATTTGATGAGTGCAGGATTACACAGATTATGGAAGGATAGATTGGTTTCAAAACTGAATCCTTTTCCTGGAATGAACCATCTTGATGTGGCTGGTGGGACAGGTGATGTTGCTTTCAGAATACTAGACAGTATAAACAGCATCAAACATAGAGCTTTGCTGAATGTTCTTGAAGATGATTTACAGGAAGAAACTAAGGTGTATGTATGTGACATCAATCCCAACATGTTGAATGTTGGTAAAAAGCGGGCCTTGCAGAGAGGTCTTGGAGAAGACAAATCCCTTCTATGGGTGGAGGGAGATGCAGAAGCCTTGAGTTTCGGAGATAATACAATGGATGGTTACACAATTGCATTTGGGATCCGGAATGTCACACACATAGAGAAAGCACTTTCTGAAGCTTATAGGGTACTAAAACGGGGAGGAAGGTTCCTGTGCCTTGAACTCAGCCATGTAGAGGGACCTGTATTCAAAGACTTCTATGACTTTTATTCATTCTCAATCATTCCCACCCTAGGAGAGCTAGTTGCAGGGGATAGAGAATCTTATCAGTACTTGGTGGAGAGTATTCGTCGTTTTCCGCCACAGGAGACATTTGCATCAATGATTGCAGACGCAGGTTTCCAGAAGGTTGAGTATGAAAATCTAGTTGGAGGAGTGGTAGCGATTCATTCAGGGTTGAAAATTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00130 ko01100 ko01110 map00130 map01100 map01110

Pfam Domains

Protein Families

Ubie_methyltran

Protein Analysis

289

Amino Acids

32.26

Weight (kDa)

5.93

Isoelectric Point (pI)

35.86

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ubie_methyltran	PF01209	40 - 288	1.7e-84	ubiE/COQ5 methyltransferase family
Methyltransf_31	PF13847	83 - 210	4.6e-07	Methyltransferase domain
Methyltransf_12	PF08242	88 - 204	2.5e-07	Methyltransferase domain
Methyltransf_25	PF13649	121 - 202	1e-11	Methyltransferase domain
Methyltransf_11	PF08241	125 - 206	6.5e-14	Methyltransferase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0002791)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G57300 AT5G57300 AT5G57300 AT5G57300
fragaria_vesca	FvH4_4g07660 FvH4_4g07660 FvH4_4g07660 FvH4_4g07660 FvH4_4g07660 FvH4_4g07660 FvH4_4g07660 FvH4_4g07660
malus_domestica	MD03G1035800.v1.1 MD03G1036000.v1.1 MD13G1245000.v1.1 MD16G1253300.v1.1
prunus_persica	Prupe.1G079700_v2.0.a1 Prupe.1G079700_v2.0.a1
pyrus_communis	pycom13g21600
rosa_chinensis	RchiOBHm_Chr4g0400331 RchiOBHm_Chr4g0400411 RchiOBHm_Chr4g0400471 RchiOBHm_Chr4g0400591 RchiOBHm_Chr4g0400601 RchiOBHm_Chr4g0400651 RchiOBHm_Chr4g0400661
rosa_laevigata	RLG00000009189
rosa_multiflora	Rmu_sc0003957.1_g000001
rosa_roxburghii	Rroxscaffold_5G00345430
rosa_rugosa	Rorug04G0024900 Rorug04G0025000
rosa_samantha	Rh4AG101200 Rh4AG101300 Rh4AG102600 Rh4BG097900 Rh4CG110900 Rh4DG094600 Rh7BG256500
rosa_wichuraiana	Rw4G008310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	788
AccIII	TCCGGA	1 cut(s)	543
AciI	CCGC	2 cut(s)	427, 761
AclWI	GGATC	2 cut(s)	535, 548
AcsI	RAATTY	1 cut(s)	864
AcuI	CTGAAG	2 cut(s)	130, 597
AfaI	GTAC	3 cut(s)	108, 591, 734
AfiI	CCNNNNNNNGG	5 cut(s)	248, 468, 469, 637, 695
AflIII	ACRYGT	1 cut(s)	405
AgsI	TTSAA	8 cut(s)	100, 162, 231, 353, 412, 623, 652, 862
AjnI	CCWGG	2 cut(s)	47, 247
AjuI	GAANNNNNNNTTGG	4 cut(s)	206, 238, 813, 845
AluBI	AGCT	4 cut(s)	90, 335, 581, 703
AluI	AGCT	4 cut(s)	90, 335, 581, 703
Alw26I	GTCTC	1 cut(s)	764
AlwI	GGATC	2 cut(s)	535, 548
Aor13HI	TCCGGA	1 cut(s)	543
AoxI	GGCC	2 cut(s)	3, 429
ApoI	RAATTY	1 cut(s)	864
AspA2I	CCTAGG	1 cut(s)	694
AspS9I	GGNCC	2 cut(s)	429, 641
AsuHPI	GGTGA	1 cut(s)	296
AvaII	GGWCC	1 cut(s)	641
AvrII	CCTAGG	1 cut(s)	694
BamHI	GGATCC	1 cut(s)	540
BarI	GAAGNNNNNNTAC	2 cut(s)	345, 377
BbsI	GAAGAC	2 cut(s)	136, 459
BccI	CCATC	2 cut(s)	267, 512
BciT130I	CCWGG	2 cut(s)	49, 249
BcoDI	GTCTC	1 cut(s)	764
BfaI	CTAG	4 cut(s)	305, 695, 704, 827
BfuAI	ACCTGC	1 cut(s)	788
BlnI	CCTAGG	1 cut(s)	694
BmcAI	AGTACT	1 cut(s)	734
Bme1390I	CCNGG	2 cut(s)	49, 249
Bme18I	GGWCC	1 cut(s)	641
BmgT120I	GGNCC	2 cut(s)	429, 641
BmiI	GGNNCC	3 cut(s)	542, 611, 642
BmrFI	CCNGG	2 cut(s)	49, 249
BmsI	GCATC	4 cut(s)	71, 330, 472, 788
BpiI	GAAGAC	2 cut(s)	136, 459
BpuEI	CTTGAG	2 cut(s)	28, 514
BsaJI	CCNNGG	2 cut(s)	47, 694
BsaWI	WCCGGW	1 cut(s)	543
BsaXI	ACNNNNNCTCC	4 cut(s)	690, 720, 825, 855
Bsc4I	CCNNNNNNNGG	5 cut(s)	248, 468, 469, 637, 695
Bse3DI	GCAATG	1 cut(s)	157
BseAI	TCCGGA	1 cut(s)	543
BseBI	CCWGG	2 cut(s)	49, 249
BseDI	CCNNGG	2 cut(s)	47, 694
BseGI	GGATG	1 cut(s)	523
BseLI	CCNNNNNNNGG	5 cut(s)	248, 468, 469, 637, 695
BseMI	GCAATG	1 cut(s)	157
BseMII	CTCAG	1 cut(s)	640
BseRI	GAGGAG	1 cut(s)	849
BsgI	GTGCAG	1 cut(s)	213
BshFI	GGCC	2 cut(s)	5, 431
BsiSI	CCGG	1 cut(s)	544
BslFI	GGGAC	2 cut(s)	292, 654
BslI	CCNNNNNNNGG	5 cut(s)	248, 468, 469, 637, 695
BsmAI	GTCTC	1 cut(s)	764
BsmFI	GGGAC	2 cut(s)	292, 654
BsmI	GAATGC	1 cut(s)	73
BsnI	GGCC	2 cut(s)	5, 431
Bsp13I	TCCGGA	1 cut(s)	543
Bsp143I	GATC	1 cut(s)	540
BspACI	CCGC	2 cut(s)	427, 761
BspANI	GGCC	2 cut(s)	5, 431
BspCNI	CTCAG	1 cut(s)	639
BspEI	TCCGGA	1 cut(s)	543
BspLI	GGNNCC	3 cut(s)	542, 611, 642
BspMI	ACCTGC	1 cut(s)	788
BspPI	GGATC	2 cut(s)	535, 548
BsrDI	GCAATG	1 cut(s)	157
BssECI	CCNNGG	2 cut(s)	47, 694
BssMI	GATC	1 cut(s)	540
BssT1I	CCWWGG	1 cut(s)	694
Bst2UI	CCWGG	2 cut(s)	49, 249
Bst4CI	ACNGT	3 cut(s)	16, 42, 311
Bst6I	CTCTTC	1 cut(s)	108
BstC8I	GCNNGC	1 cut(s)	429
BstDEI	CTNAG	2 cut(s)	375, 626
BstF5I	GGATG	1 cut(s)	523
BstKTI	GATC	1 cut(s)	543
BstMAI	GTCTC	1 cut(s)	764
BstMBI	GATC	1 cut(s)	540
BstMWI	GCNNNNNNNGC	1 cut(s)	433
BstNI	CCWGG	2 cut(s)	49, 249
BstNSI	RCATGY	1 cut(s)	409
BstSCI	CCNGG	2 cut(s)	47, 247
BstV2I	GAAGAC	2 cut(s)	136, 459
BstX2I	RGATCY	1 cut(s)	540
BstYI	RGATCY	1 cut(s)	540
BsuRI	GGCC	2 cut(s)	5, 431
BtsCI	GGATG	1 cut(s)	523
BtsIMutI	CAGTG	1 cut(s)	21
BveI	ACCTGC	1 cut(s)	788
Cac8I	GCNNGC	1 cut(s)	429
Cfr13I	GGNCC	2 cut(s)	429, 641
CseI	GACGC	1 cut(s)	803
Csp6I	GTAC	3 cut(s)	107, 590, 733
CspCI	CAANNNNNGTGG	2 cut(s)	73, 108
CviAII	CATG	3 cut(s)	80, 406, 632
CviJI	RGCY	9 cut(s)	5, 90, 272, 335, 431, 491, 581, 630, 703
CviKI_1	RGCY	9 cut(s)	5, 90, 272, 335, 431, 491, 581, 630, 703
CviQI	GTAC	3 cut(s)	107, 590, 733
DdeI	CTNAG	2 cut(s)	375, 626
DpnI	GATC	1 cut(s)	542
DpnII	GATC	1 cut(s)	540
Eam1104I	CTCTTC	1 cut(s)	108
EarI	CTCTTC	1 cut(s)	108
EciI	GGCGGA	1 cut(s)	750
Eco130I	CCWWGG	1 cut(s)	694
Eco47I	GGWCC	1 cut(s)	641
Eco57I	CTGAAG	2 cut(s)	130, 597
EcoO109I	RGGNCCY	1 cut(s)	641
EcoRII	CCWGG	2 cut(s)	47, 247
EcoT14I	CCWWGG	1 cut(s)	694
ErhI	CCWWGG	1 cut(s)	694
FaeI	CATG	3 cut(s)	83, 409, 635
FalI	AAGNNNNNCTT	2 cut(s)	416, 448
FaqI	GGGAC	2 cut(s)	292, 654
FatI	CATG	3 cut(s)	79, 405, 631
FauI	CCCGC	1 cut(s)	420
FokI	GGATG	1 cut(s)	530
FspBI	CTAG	4 cut(s)	305, 695, 704, 827
HaeIII	GGCC	2 cut(s)	5, 431
HapII	CCGG	1 cut(s)	544
HgaI	GACGC	1 cut(s)	803
Hin1II	CATG	3 cut(s)	83, 409, 635
HindIII	AAGCTT	2 cut(s)	88, 579
HinfI	GANTC	4 cut(s)	96, 238, 722, 847
HpaII	CCGG	1 cut(s)	544
HphI	GGTGA	1 cut(s)	296
Hpy166II	GTNNAC	1 cut(s)	38
Hpy188I	TCNGA	3 cut(s)	299, 503, 577
Hpy188III	TCNNGA	4 cut(s)	263, 350, 544, 805
Hpy8I	GTNNAC	1 cut(s)	38
Hpy99I	CGWCG	1 cut(s)	756
HpyAV	CCTTC	4 cut(s)	208, 473, 600, 802
HpyCH4III	ACNGT	3 cut(s)	16, 42, 311
HpyCH4V	TGCA	9 cut(s)	62, 73, 194, 436, 485, 533, 710, 779, 791
HpyF10VI	GCNNNNNNNGC	1 cut(s)	433
HpyF3I	CTNAG	2 cut(s)	375, 626
Hsp92II	CATG	3 cut(s)	83, 409, 635
Kpn2I	TCCGGA	1 cut(s)	543
Kzo9I	GATC	1 cut(s)	540
LweI	GCATC	4 cut(s)	71, 330, 472, 788
MaeI	CTAG	4 cut(s)	305, 695, 704, 827
MaeIII	GTNAC	4 cut(s)	42, 389, 521, 550
MalI	GATC	1 cut(s)	542
MboI	GATC	1 cut(s)	540
MboII	GAAGA	5 cut(s)	125, 136, 365, 380, 464
MfeI	CAATTG	1 cut(s)	528
MflI	RGATCY	1 cut(s)	540
MluCI	AATT	2 cut(s)	528, 864
MmeI	TCCRAC	1 cut(s)	811
MnlI	CCTC	7 cut(s)	15, 109, 434, 469, 596, 631, 827
MroI	TCCGGA	1 cut(s)	543
MslI	CAYNNNNRTG	2 cut(s)	78, 264
MspI	CCGG	1 cut(s)	544
MspR9I	CCNGG	2 cut(s)	49, 249
MunI	CAATTG	1 cut(s)	528
Mva1269I	GAATGC	1 cut(s)	73
MvaI	CCWGG	2 cut(s)	49, 249
MwoI	GCNNNNNNNGC	1 cut(s)	433
NdeII	GATC	1 cut(s)	540
NlaIII	CATG	3 cut(s)	83, 409, 635
NlaIV	GGNNCC	3 cut(s)	542, 611, 642
NmuCI	GTSAC	2 cut(s)	389, 550
NspI	RCATGY	1 cut(s)	409
PciI	ACATGT	1 cut(s)	405
PctI	GAATGC	1 cut(s)	73
PfeI	GAWTC	4 cut(s)	96, 238, 722, 847
PfoI	TCCNGGA	1 cut(s)	247
PpuMI	RGGWCCY	1 cut(s)	641
PscI	ACATGT	1 cut(s)	405
Psp5II	RGGWCCY	1 cut(s)	641
Psp6I	CCWGG	2 cut(s)	47, 247
PspGI	CCWGG	2 cut(s)	47, 247
PspN4I	GGNNCC	3 cut(s)	542, 611, 642
PspPI	GGNCC	2 cut(s)	429, 641
PspPPI	RGGWCCY	1 cut(s)	641
PsuI	RGATCY	1 cut(s)	540
RsaI	GTAC	3 cut(s)	108, 591, 734
RsaNI	GTAC	3 cut(s)	107, 590, 733
RseI	CAYNNNNRTG	2 cut(s)	78, 264
Sau3AI	GATC	1 cut(s)	540
Sau96I	GGNCC	2 cut(s)	429, 641
ScaI	AGTACT	1 cut(s)	734
ScrFI	CCNGG	2 cut(s)	49, 249
SfaNI	GCATC	4 cut(s)	71, 330, 472, 788
SinI	GGWCC	1 cut(s)	641
SmiMI	CAYNNNNRTG	2 cut(s)	78, 264
SmlI	CTYRAG	2 cut(s)	7, 493
SmoI	CTYRAG	2 cut(s)	7, 493
Sse9I	AATT	2 cut(s)	528, 864
SsiI	CCGC	2 cut(s)	427, 761
SspMI	CTAG	4 cut(s)	305, 695, 704, 827
StyD4I	CCNGG	2 cut(s)	47, 247
StyI	CCWWGG	1 cut(s)	694
TaaI	ACNGT	3 cut(s)	16, 42, 311
TaqI	TCGA	1 cut(s)	20
TasI	AATT	2 cut(s)	528, 864
TatI	WGTACW	1 cut(s)	732
TfiI	GAWTC	4 cut(s)	96, 238, 722, 847
TscAI	CASTG	1 cut(s)	21
TseFI	GTSAC	2 cut(s)	389, 550
Tsp45I	GTSAC	2 cut(s)	389, 550
TspDTI	ATGAA	5 cut(s)	191, 269, 663, 834, 839
TspRI	CASTG	1 cut(s)	21
VpaK11BI	GGWCC	1 cut(s)	641
XapI	RAATTY	1 cut(s)	864
XceI	RCATGY	1 cut(s)	409
XmaJI	CCTAGG	1 cut(s)	694
XspI	CTAG	4 cut(s)	305, 695, 704, 827
ZrmI	AGTACT	1 cut(s)	734

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.