Rmu_sc0003957.1_g000001

Methyltransferase required for the conversion of 2- polyprenyl-6-methoxy-1,4-benzoquinol (DDMQH2) to 2-polyprenyl-3- methyl-6-methoxy-1,4-benzoquinol (DMQH2)

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003957.1
Physical Location & Seq
Forward (+)
988 .. 4922
3935 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003957.1_g000001.1.cds

Sequence Viewer

Length: 684 bp
atgagtgcaggattacacagattatggaaggatagattggtttcaaaactgaatccttttcctggaatgaaccatcttgatgtggctggtgggacaggtgatgttgctttcagaatactagacagtataaacagcatcaaacatagagctttgctgaatgttcttgaagatgatttacaggaagaaactaaggtgtatgtatgtgacatcaatcccaacatgttgaatgttggtaaaaagcgggccttgcagagaggtcttggagaagacaaatcccttctatgggtggagggagatgcagaagccttgagtttcggagataatacaatggatggttacacaattgcatttgggatccggaatgtcacacacatagagaaagcactttctgaagcttatagggtactaaaacggggaggaaggttcctgtgccttgaactcagccatgtagaggtacctgtattcaaagacttctatgacttttattcattctcaatcattcccaccctaggagagctagttgcaggggatagagaatcttatcagtacttggtggagagtattcgtcgttttccgccacaggagacatttgcatcaatgattgcagacgcaggtttccagaaggttgagtatgaaaatctagttggaggagtggtagcgattcattcagggttgaaaatttag

Protein Analysis

227

Amino Acids

25.4

Weight (kDa)

5.55

Isoelectric Point (pI)

37.0

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 602
Acc65I GGTACC 1 cut(s) 454
AccB1I GGYRCC 1 cut(s) 454
AccIII TCCGGA 1 cut(s) 357
AciI CCGC 2 cut(s) 241, 575
AclWI GGATC 2 cut(s) 349, 362
AcsI RAATTY 1 cut(s) 678
AcuI CTGAAG 1 cut(s) 411
AfaI GTAC 3 cut(s) 405, 456, 548
AfiI CCNNNNNNNGG 5 cut(s) 62, 282, 283, 451, 509
AflIII ACRYGT 1 cut(s) 219
AgsI TTSAA 6 cut(s) 45, 167, 226, 437, 466, 676
AjnI CCWGG 1 cut(s) 61
AjuI GAANNNNNNNTTGG 4 cut(s) 20, 52, 627, 659
AluBI AGCT 3 cut(s) 149, 395, 517
AluI AGCT 3 cut(s) 149, 395, 517
Alw26I GTCTC 1 cut(s) 578
AlwI GGATC 2 cut(s) 349, 362
Aor13HI TCCGGA 1 cut(s) 357
AoxI GGCC 1 cut(s) 243
ApoI RAATTY 1 cut(s) 678
Asp718I GGTACC 1 cut(s) 454
AspA2I CCTAGG 1 cut(s) 508
AspS9I GGNCC 1 cut(s) 243
AsuHPI GGTGA 1 cut(s) 110
AvrII CCTAGG 1 cut(s) 508
BamHI GGATCC 1 cut(s) 354
BanI GGYRCC 1 cut(s) 454
BarI GAAGNNNNNNTAC 2 cut(s) 159, 191
BbsI GAAGAC 1 cut(s) 273
BccI CCATC 2 cut(s) 81, 326
BciT130I CCWGG 1 cut(s) 63
BcoDI GTCTC 1 cut(s) 578
BfaI CTAG 4 cut(s) 119, 509, 518, 641
BfuAI ACCTGC 1 cut(s) 602
BlnI CCTAGG 1 cut(s) 508
BmcAI AGTACT 1 cut(s) 548
Bme1390I CCNGG 1 cut(s) 63
BmgT120I GGNCC 1 cut(s) 243
BmiI GGNNCC 3 cut(s) 356, 425, 456
BmrFI CCNGG 1 cut(s) 63
BmsI GCATC 3 cut(s) 144, 286, 602
BpiI GAAGAC 1 cut(s) 273
BpuEI CTTGAG 1 cut(s) 328
BsaJI CCNNGG 1 cut(s) 508
BsaWI WCCGGW 1 cut(s) 357
BsaXI ACNNNNNCTCC 4 cut(s) 504, 534, 639, 669
Bsc4I CCNNNNNNNGG 5 cut(s) 62, 282, 283, 451, 509
BseAI TCCGGA 1 cut(s) 357
BseBI CCWGG 1 cut(s) 63
BseDI CCNNGG 1 cut(s) 508
BseGI GGATG 1 cut(s) 337
BseLI CCNNNNNNNGG 5 cut(s) 62, 282, 283, 451, 509
BseMII CTCAG 1 cut(s) 454
BseRI GAGGAG 1 cut(s) 663
BsgI GTGCAG 1 cut(s) 27
BshFI GGCC 1 cut(s) 245
BshNI GGYRCC 1 cut(s) 454
BsiSI CCGG 1 cut(s) 358
BslFI GGGAC 1 cut(s) 106
BslI CCNNNNNNNGG 5 cut(s) 62, 282, 283, 451, 509
BsmAI GTCTC 1 cut(s) 578
BsmFI GGGAC 1 cut(s) 106
BsnI GGCC 1 cut(s) 245
Bsp13I TCCGGA 1 cut(s) 357
Bsp143I GATC 1 cut(s) 354
BspACI CCGC 2 cut(s) 241, 575
BspANI GGCC 1 cut(s) 245
BspCNI CTCAG 1 cut(s) 453
BspEI TCCGGA 1 cut(s) 357
BspLI GGNNCC 3 cut(s) 356, 425, 456
BspMI ACCTGC 1 cut(s) 602
BspPI GGATC 2 cut(s) 349, 362
BspT107I GGYRCC 1 cut(s) 454
BssECI CCNNGG 1 cut(s) 508
BssMI GATC 1 cut(s) 354
BssT1I CCWWGG 1 cut(s) 508
Bst2UI CCWGG 1 cut(s) 63
Bst4CI ACNGT 1 cut(s) 125
BstC8I GCNNGC 1 cut(s) 243
BstDEI CTNAG 2 cut(s) 189, 440
BstF5I GGATG 1 cut(s) 337
BstKTI GATC 1 cut(s) 357
BstMAI GTCTC 1 cut(s) 578
BstMBI GATC 1 cut(s) 354
BstMWI GCNNNNNNNGC 1 cut(s) 247
BstNI CCWGG 1 cut(s) 63
BstNSI RCATGY 1 cut(s) 223
BstSCI CCNGG 1 cut(s) 61
BstV2I GAAGAC 1 cut(s) 273
BstX2I RGATCY 1 cut(s) 354
BstYI RGATCY 1 cut(s) 354
BsuRI GGCC 1 cut(s) 245
BtsCI GGATG 1 cut(s) 337
BveI ACCTGC 1 cut(s) 602
Cac8I GCNNGC 1 cut(s) 243
Cfr13I GGNCC 1 cut(s) 243
CseI GACGC 1 cut(s) 617
Csp6I GTAC 3 cut(s) 404, 455, 547
CviAII CATG 2 cut(s) 220, 446
CviJI RGCY 7 cut(s) 86, 149, 245, 305, 395, 444, 517
CviKI_1 RGCY 7 cut(s) 86, 149, 245, 305, 395, 444, 517
CviQI GTAC 3 cut(s) 404, 455, 547
DdeI CTNAG 2 cut(s) 189, 440
DpnI GATC 1 cut(s) 356
DpnII GATC 1 cut(s) 354
EciI GGCGGA 1 cut(s) 564
Eco130I CCWWGG 1 cut(s) 508
Eco57I CTGAAG 1 cut(s) 411
EcoRII CCWGG 1 cut(s) 61
EcoT14I CCWWGG 1 cut(s) 508
ErhI CCWWGG 1 cut(s) 508
FaeI CATG 2 cut(s) 223, 449
FalI AAGNNNNNCTT 2 cut(s) 230, 262
FaqI GGGAC 1 cut(s) 106
FatI CATG 2 cut(s) 219, 445
FauI CCCGC 1 cut(s) 234
FokI GGATG 1 cut(s) 344
FspBI CTAG 4 cut(s) 119, 509, 518, 641
HaeIII GGCC 1 cut(s) 245
HapII CCGG 1 cut(s) 358
HgaI GACGC 1 cut(s) 617
Hin1II CATG 2 cut(s) 223, 449
HindIII AAGCTT 1 cut(s) 393
HinfI GANTC 3 cut(s) 52, 536, 661
HpaII CCGG 1 cut(s) 358
HphI GGTGA 1 cut(s) 110
Hpy188I TCNGA 3 cut(s) 113, 317, 391
Hpy188III TCNNGA 4 cut(s) 77, 164, 358, 619
Hpy99I CGWCG 1 cut(s) 570
HpyAV CCTTC 4 cut(s) 22, 287, 414, 616
HpyCH4III ACNGT 1 cut(s) 125
HpyCH4V TGCA 7 cut(s) 8, 250, 299, 347, 524, 593, 605
HpyF10VI GCNNNNNNNGC 1 cut(s) 247
HpyF3I CTNAG 2 cut(s) 189, 440
Hsp92II CATG 2 cut(s) 223, 449
Kpn2I TCCGGA 1 cut(s) 357
KpnI GGTACC 1 cut(s) 458
Kzo9I GATC 1 cut(s) 354
LweI GCATC 3 cut(s) 144, 286, 602
MaeI CTAG 4 cut(s) 119, 509, 518, 641
MaeIII GTNAC 3 cut(s) 203, 335, 364
MalI GATC 1 cut(s) 356
MboI GATC 1 cut(s) 354
MboII GAAGA 3 cut(s) 179, 194, 278
MfeI CAATTG 1 cut(s) 342
MflI RGATCY 1 cut(s) 354
MluCI AATT 2 cut(s) 342, 678
MmeI TCCRAC 1 cut(s) 625
MnlI CCTC 5 cut(s) 248, 283, 410, 445, 641
MroI TCCGGA 1 cut(s) 357
MslI CAYNNNNRTG 1 cut(s) 78
MspI CCGG 1 cut(s) 358
MspR9I CCNGG 1 cut(s) 63
MunI CAATTG 1 cut(s) 342
MvaI CCWGG 1 cut(s) 63
MwoI GCNNNNNNNGC 1 cut(s) 247
NdeII GATC 1 cut(s) 354
NlaIII CATG 2 cut(s) 223, 449
NlaIV GGNNCC 3 cut(s) 356, 425, 456
NmuCI GTSAC 2 cut(s) 203, 364
NspI RCATGY 1 cut(s) 223
PciI ACATGT 1 cut(s) 219
PfeI GAWTC 3 cut(s) 52, 536, 661
PfoI TCCNGGA 1 cut(s) 61
PscI ACATGT 1 cut(s) 219
Psp6I CCWGG 1 cut(s) 61
PspGI CCWGG 1 cut(s) 61
PspN4I GGNNCC 3 cut(s) 356, 425, 456
PspPI GGNCC 1 cut(s) 243
PsuI RGATCY 1 cut(s) 354
RsaI GTAC 3 cut(s) 405, 456, 548
RsaNI GTAC 3 cut(s) 404, 455, 547
RseI CAYNNNNRTG 1 cut(s) 78
Sau3AI GATC 1 cut(s) 354
Sau96I GGNCC 1 cut(s) 243
ScaI AGTACT 1 cut(s) 548
ScrFI CCNGG 1 cut(s) 63
SfaNI GCATC 3 cut(s) 144, 286, 602
SmiMI CAYNNNNRTG 1 cut(s) 78
SmlI CTYRAG 1 cut(s) 307
SmoI CTYRAG 1 cut(s) 307
Sse9I AATT 2 cut(s) 342, 678
SsiI CCGC 2 cut(s) 241, 575
SspMI CTAG 4 cut(s) 119, 509, 518, 641
StyD4I CCNGG 1 cut(s) 61
StyI CCWWGG 1 cut(s) 508
TaaI ACNGT 1 cut(s) 125
TasI AATT 2 cut(s) 342, 678
TatI WGTACW 1 cut(s) 546
TfiI GAWTC 3 cut(s) 52, 536, 661
TseFI GTSAC 2 cut(s) 203, 364
Tsp45I GTSAC 2 cut(s) 203, 364
TspDTI ATGAA 4 cut(s) 83, 477, 648, 653
XapI RAATTY 1 cut(s) 678
XceI RCATGY 1 cut(s) 223
XmaJI CCTAGG 1 cut(s) 508
XspI CTAG 4 cut(s) 119, 509, 518, 641
ZrmI AGTACT 1 cut(s) 548
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.