Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr16

Orthogroup ID

OG0002791

Physical Location & Seq

Genomic Coordinates Reverse (-)

28699822 .. 28700496

Gene Structure 675 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD16G1253300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 213 bp

ATGGCATTGAGAACAGTGACGAGGAAGTTAGGGAGTAAACTATTACCCCTGTTTTCTCCTGCGGCTCTATTGCATTCGCATGCTACAAGCTTTGGATTACACAGATTATGGAATGATAGATTAGTTTCCAAACTGAATCCTTTTCCTGGAATGAAGCACCTTGATGTGGCTGGTGAGACAGGCAAAGCTTGTGATATGCATTTACTGTGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00130 ko01100 ko01110 map00130 map01100 map01110

Pfam Domains

Protein Families

Ubie_methyltran

Protein Analysis

71

Amino Acids

7.8

Weight (kDa)

10.18

Isoelectric Point (pI)

47.55

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002791)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G57300 AT5G57300 AT5G57300 AT5G57300
fragaria_vesca	FvH4_4g07660 FvH4_4g07660 FvH4_4g07660 FvH4_4g07660 FvH4_4g07660 FvH4_4g07660 FvH4_4g07660 FvH4_4g07660
malus_domestica	MD03G1035800.v1.1 MD03G1036000.v1.1 MD13G1245000.v1.1 MD16G1253300.v1.1
prunus_persica	Prupe.1G079700_v2.0.a1 Prupe.1G079700_v2.0.a1
pyrus_communis	pycom13g21600
rosa_chinensis	RchiOBHm_Chr4g0400331 RchiOBHm_Chr4g0400411 RchiOBHm_Chr4g0400471 RchiOBHm_Chr4g0400591 RchiOBHm_Chr4g0400601 RchiOBHm_Chr4g0400651 RchiOBHm_Chr4g0400661
rosa_laevigata	RLG00000009189
rosa_multiflora	Rmu_sc0003957.1_g000001
rosa_roxburghii	Rroxscaffold_5G00345430
rosa_rugosa	Rorug04G0024900 Rorug04G0025000
rosa_samantha	Rh4AG101200 Rh4AG101300 Rh4AG102600 Rh4BG097900 Rh4CG110900 Rh4DG094600 Rh7BG256500
rosa_wichuraiana	Rw4G008310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	62
AfiI	CCNNNNNNNGG	2 cut(s)	146, 166
AjnI	CCWGG	1 cut(s)	145
AluBI	AGCT	2 cut(s)	90, 188
AluI	AGCT	2 cut(s)	90, 188
Alw26I	GTCTC	1 cut(s)	170
AsuHPI	GGTGA	1 cut(s)	185
BciT130I	CCWGG	1 cut(s)	147
BcoDI	GTCTC	1 cut(s)	170
BisI	GCNGC	1 cut(s)	63
BlsI	GCNGC	1 cut(s)	64
Bme1390I	CCNGG	1 cut(s)	147
BmrFI	CCNGG	1 cut(s)	147
Bsc4I	CCNNNNNNNGG	2 cut(s)	146, 166
BseBI	CCWGG	1 cut(s)	147
BseLI	CCNNNNNNNGG	2 cut(s)	146, 166
BslI	CCNNNNNNNGG	2 cut(s)	146, 166
BsmAI	GTCTC	1 cut(s)	170
BsmI	GAATGC	1 cut(s)	73
BspACI	CCGC	1 cut(s)	62
Bst2UI	CCWGG	1 cut(s)	147
Bst4CI	ACNGT	2 cut(s)	16, 207
BstC8I	GCNNGC	1 cut(s)	81
BstMAI	GTCTC	1 cut(s)	170
BstNI	CCWGG	1 cut(s)	147
BstNSI	RCATGY	1 cut(s)	83
BstSCI	CCNGG	1 cut(s)	145
BtsIMutI	CAGTG	1 cut(s)	21
Cac8I	GCNNGC	1 cut(s)	81
CviAII	CATG	1 cut(s)	80
CviJI	RGCY	4 cut(s)	65, 90, 170, 188
CviKI_1	RGCY	4 cut(s)	65, 90, 170, 188
EcoRII	CCWGG	1 cut(s)	145
EcoT22I	ATGCAT	1 cut(s)	201
FaeI	CATG	1 cut(s)	83
FaiI	YATR	3 cut(s)	81, 109, 197
FatI	CATG	1 cut(s)	79
Fnu4HI	GCNGC	1 cut(s)	63
Fsp4HI	GCNGC	1 cut(s)	63
GluI	GCNGC	1 cut(s)	63
Hin1II	CATG	1 cut(s)	83
HindIII	AAGCTT	2 cut(s)	88, 186
HinfI	GANTC	1 cut(s)	136
HphI	GGTGA	1 cut(s)	185
Hpy166II	GTNNAC	1 cut(s)	38
Hpy8I	GTNNAC	1 cut(s)	38
HpyCH4III	ACNGT	2 cut(s)	16, 207
HpyCH4V	TGCA	2 cut(s)	73, 199
Hsp92II	CATG	1 cut(s)	83
LpnPI	CCDG	6 cut(s)	62, 72, 132, 156, 159, 165
MaeIII	GTNAC	1 cut(s)	16
MnlI	CCTC	1 cut(s)	15
Mph1103I	ATGCAT	1 cut(s)	201
MslI	CAYNNNNRTG	2 cut(s)	78, 162
MspR9I	CCNGG	1 cut(s)	147
Mva1269I	GAATGC	1 cut(s)	73
MvaI	CCWGG	1 cut(s)	147
NlaIII	CATG	1 cut(s)	83
NmuCI	GTSAC	1 cut(s)	16
NsiI	ATGCAT	1 cut(s)	201
NspI	RCATGY	1 cut(s)	83
PaeI	GCATGC	1 cut(s)	83
PctI	GAATGC	1 cut(s)	73
PfeI	GAWTC	1 cut(s)	136
PfoI	TCCNGGA	1 cut(s)	145
PkrI	GCNGC	1 cut(s)	64
Psp6I	CCWGG	1 cut(s)	145
PspGI	CCWGG	1 cut(s)	145
RseI	CAYNNNNRTG	2 cut(s)	78, 162
SatI	GCNGC	1 cut(s)	63
ScrFI	CCNGG	1 cut(s)	147
SetI	ASST	3 cut(s)	92, 162, 190
SmiMI	CAYNNNNRTG	2 cut(s)	78, 162
SphI	GCATGC	1 cut(s)	83
SsiI	CCGC	1 cut(s)	62
StyD4I	CCNGG	1 cut(s)	145
TaaI	ACNGT	2 cut(s)	16, 207
TauI	GCSGC	1 cut(s)	65
TfiI	GAWTC	1 cut(s)	136
TscAI	CASTG	1 cut(s)	21
TseFI	GTSAC	1 cut(s)	16
Tsp45I	GTSAC	1 cut(s)	16
TspDTI	ATGAA	1 cut(s)	167
TspRI	CASTG	1 cut(s)	21
XceI	RCATGY	1 cut(s)	83
Zsp2I	ATGCAT	1 cut(s)	201

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.