Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0002791

Physical Location & Seq

Genomic Coordinates Reverse (-)

3458971 .. 3462585

Gene Structure 3615 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0024900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2079 bp

ATGGCGTCGTCTTATCTCGGCGCCTGTACTCCACGCGCCTCCCAGTTCTCCTTACACGGGCACAGACACCGATGCCCGATCCTTCTCGAGCAGGCGCGAACCGCGCCGTTCTCCGGAAACAGAGGAGTAAGCTTGAAGGTCAGGGCGGCGTCTTCCGATGGCGGCGGAGAGTCGTACCTCGGAATGTGGAAGAAGGCGATGGAGAACGAGAAGAAGGCCGTCAAGTTCCAGAAAATCGTCGAGAATTCAGCTCCGGGGGACAACGACGTCGGCGGCGCGGGCGAGAGCATTGCGGAGAATCTGGAGCACAAGAGCCAGGAGTTCGAGAAGATTCTGGAGGTTCCGAAGGAGGAGAGGGATCGGATTCAGCGAATGCAGGTCGTCGATAGGGCCGCGGCGGCGATCGCGGCGGCTCGCGCGCTTTTGAAAGAGAGCGGCTTGAAGAAGGAGTCCGGTTCAGGTGAGCCGGGTTCGGGTGGAGTGAGGACTGAACCGGATTTGGGTGGAGTGAGGACTGAACCGGATTTGAGTGGAGCAATTGAGGCTCCTGATGAAGGTAAAGCCGTAAAGTCTAATAAAAGCTTTGAAGATGAGTCATCTCCCTCTTTGGTAGAATTGGATGGTTTATTTTCCATGTTTGTTTTGATAGGAATGCAGGATGGGAGTATATCTGTGCCTCAGTCAGAAGAAAGTTCAGGAACTTGGACTCCAGGTCCAGACTTTTGGTCCTGGACCCCGCCGAGTAGTGATAGTTCAGATGATATAATCGACTTGCAGGCAGCGAAAAAGCCTTCAGCAAATCCAAACTTGAGTTTTCCAGTGAAGGAGAAAGAGCGATCCTTGGATGTTCTCTCAATTCCCCTTCAGAGTCATCTGTCTGAAATTCCTCTTCCCCCTTTGCAATCACTGAAGGAGGTCAAGAAAGTGGATGTCGCTGAGTCCACTTCCACAAAAGAGGAACATGAACTTGGACATGAGTTTTCAGTACATGCAGCAGAAGCTGCTCGTGCTCTTGATAAGGCGGATCAGGAGTCATTATCTGGTGTGTATACGGATGGAGCTAGGTGGTGGAAGGAATCTGGAGTTGAGCAAAGGCCGGATGGCGTGACGTGCAGGTGGACAATGATCAGAGGTGTCAGTGCCGACCAAGTTACTGAGTGGCAAGATAAGTACTGGGAGGCTGCAGATGAGTTAGGCCACAAGGAGCTTGGTTCAGAAAAATCAGGACGTGATGCATACGGAAATGTTTGGCGTGAACATTGGAAAGAAGCTATGTGGCAGGATTGTGGGCTTGTGCATATGGAGAAATCTGCAGACAAGTGGGGAAAGAATGGTAGAGGTGATGAATGGCAAGAGAAATGGTGGGAACATTATGATGCTTCAGGCCAAGCAGAGAAATGGGCTCATAAGTGGTGTACAATTGATCCAAACACACCAGTTGATGTTGGTCATGCTCACATTTGGCATGAAAGGTGGGGTGAAACGTATGATGGACATGGTGGGAGTAATAAATACACTGACAAATGGGCTGAACGCTGCGAGGGAGATGGTTGGTCAAAATGGGGTGACAAATGGGATGAACATTTTGATCCAAATGGCCATGGTGTGAAGCAGGGTGAAACATGGTGGGAAGGCAAGTATGGAGAGCGGTGGAACAAAACATGGGGCGAGGGCCACAATGGTTCAGGGTGGATTCATAAGTATGGGAAGAGCAGCAGCGGTGATCACTGGGATACACATGAGCAGGAAGACACCTGGTATGAGAGATTCCCTCACTTCGGTTTCTATCACTGCTTTGAAAACTCAGTTCAGCTCAGGGAAGTTCGAAAGCCATCAGAGATTGCATCGCAGATGTCTTCAGAGACTTCATCCGAGATGCCTTCTGAGACTTCGTCGGAGATGCCTTCATCAGAGATGCTTTCAGAGACTTCATCAGAGATGCCTCCAGAGACTTCATCTGAGATACCTTCAGAGACTTCATCGGAGATACCTTCAGAAATTCCATCGGACATGTCATCAGACGGTCCATTGGAGTTGCCCTCAGAGCTTCTATTGAAGAGACAATCAGAGGTGGCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00130 ko01100 ko01110 map00130 map01100 map01110

Pfam Domains

Protein Families

Ubie_methyltran

Protein Analysis

692

Amino Acids

77.12

Weight (kDa)

4.95

Isoelectric Point (pI)

47.64

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002791)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G57300 AT5G57300 AT5G57300 AT5G57300
fragaria_vesca	FvH4_4g07660 FvH4_4g07660 FvH4_4g07660 FvH4_4g07660 FvH4_4g07660 FvH4_4g07660 FvH4_4g07660 FvH4_4g07660
malus_domestica	MD03G1035800.v1.1 MD03G1036000.v1.1 MD13G1245000.v1.1 MD16G1253300.v1.1
prunus_persica	Prupe.1G079700_v2.0.a1 Prupe.1G079700_v2.0.a1
pyrus_communis	pycom13g21600
rosa_chinensis	RchiOBHm_Chr4g0400331 RchiOBHm_Chr4g0400411 RchiOBHm_Chr4g0400471 RchiOBHm_Chr4g0400591 RchiOBHm_Chr4g0400601 RchiOBHm_Chr4g0400651 RchiOBHm_Chr4g0400661
rosa_laevigata	RLG00000009189
rosa_multiflora	Rmu_sc0003957.1_g000001
rosa_roxburghii	Rroxscaffold_5G00345430
rosa_rugosa	Rorug04G0024900 Rorug04G0025000
rosa_samantha	Rh4AG101200 Rh4AG101300 Rh4AG102600 Rh4BG097900 Rh4CG110900 Rh4DG094600 Rh7BG256500
rosa_wichuraiana	Rw4G008310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1104
AasI	GACNNNNNNGTC	1 cut(s)	266
AatII	GACGTC	1 cut(s)	270
Acc36I	ACCTGC	2 cut(s)	367, 1104
AccB1I	GGYRCC	1 cut(s)	20
AccBSI	CCGCTC	2 cut(s)	435, 1648
AccI	GTMKAC	1 cut(s)	1049
AccII	CGCG	8 cut(s)	36, 97, 104, 278, 395, 407, 417, 419
AccIII	TCCGGA	1 cut(s)	113
AclWI	GGATC	6 cut(s)	73, 366, 831, 1032, 1418, 1583
AcoI	YGGCCR	1 cut(s)	1597
AcsI	RAATTY	3 cut(s)	244, 882, 1998
AcuI	CTGAAG	7 cut(s)	777, 848, 929, 1365, 1842, 1953, 1977
AcyI	GRCGYC	4 cut(s)	5, 21, 149, 267
AfaI	GTAC	5 cut(s)	28, 176, 987, 1172, 1417
AfiI	CCNNNNNNNGG	6 cut(s)	57, 113, 473, 500, 554, 1778
AflIII	ACRYGT	1 cut(s)	2010
AgsI	TTSAA	6 cut(s)	136, 427, 442, 587, 1799, 2056
AhdI	GACNNNNNGTC	2 cut(s)	711, 724
AjiI	CACGTC	2 cut(s)	1110, 1229
AjnI	CCWGG	4 cut(s)	315, 709, 728, 1754
AjuI	GAANNNNNNNTTGG	2 cut(s)	951, 983
AloI	GAACNNNNNNTCC	2 cut(s)	691, 723
AluBI	AGCT	9 cut(s)	132, 251, 582, 1001, 1061, 1207, 1271, 1813, 2047
AluI	AGCT	9 cut(s)	132, 251, 582, 1001, 1061, 1207, 1271, 1813, 2047
Alw21I	GWGCWC	2 cut(s)	309, 1012
Alw26I	GTCTC	6 cut(s)	1856, 1880, 1919, 1943, 1967, 2053
AlwI	GGATC	6 cut(s)	73, 366, 831, 1032, 1418, 1583
AlwNI	CAGNNNCTG	1 cut(s)	1001
Ama87I	CYCGRG	1 cut(s)	86
Aor13HI	TCCGGA	1 cut(s)	113
AoxI	GGCC	8 cut(s)	216, 390, 1094, 1195, 1384, 1597, 1672, 2073
ApeKI	GCWGC	7 cut(s)	779, 992, 1001, 1181, 1536, 1713, 1716
ApoI	RAATTY	3 cut(s)	244, 882, 1998
AsiSI	GCGATCGC	1 cut(s)	405
AspLEI	GCGC	7 cut(s)	23, 38, 97, 106, 278, 419, 421
AspS9I	GGNCC	6 cut(s)	390, 713, 726, 732, 1672, 2024
AsuC2I	CCSGG	2 cut(s)	255, 468
AsuHPI	GGTGA	6 cut(s)	473, 1352, 1490, 1577, 1628, 1733
AsuII	TTCGAA	1 cut(s)	1825
AvaI	CYCGRG	1 cut(s)	86
AvaII	GGWCC	4 cut(s)	713, 726, 732, 2024
BaeGI	GKGCMC	1 cut(s)	63
BalI	TGGCCA	1 cut(s)	1599
BanI	GGYRCC	1 cut(s)	20
BanII	GRGCYC	1 cut(s)	1405
BauI	CACGAG	1 cut(s)	1005
BbsI	GAAGAC	3 cut(s)	144, 1755, 1848
Bbv12I	GWGCWC	2 cut(s)	309, 1012
BbvI	GCAGC	7 cut(s)	791, 988, 1004, 1168, 1523, 1725, 1728
BceAI	ACGGC	3 cut(s)	91, 203, 548
BcgI	CGANNNNNNTGC	2 cut(s)	272, 306
BciT130I	CCWGG	4 cut(s)	317, 711, 730, 1756
BciVI	GTATCC	1 cut(s)	1726
BclI	TGATCA	2 cut(s)	1125, 1723
BcnI	CCSGG	2 cut(s)	255, 468
BcoDI	GTCTC	6 cut(s)	1856, 1880, 1919, 1943, 1967, 2053
BfaI	CTAG	1 cut(s)	1062
BfmI	CTRYAG	2 cut(s)	1182, 1311
BfoI	RGCGCY	1 cut(s)	24
BfuAI	ACCTGC	2 cut(s)	367, 1104
BfuI	GTATCC	1 cut(s)	1726
BglI	GCCNNNNNGGC	1 cut(s)	398
BmcAI	AGTACT	1 cut(s)	1172
Bme1390I	CCNGG	6 cut(s)	255, 317, 468, 711, 730, 1756
Bme18I	GGWCC	4 cut(s)	713, 726, 732, 2024
BmeRI	GACNNNNNGTC	2 cut(s)	711, 724
BmeT110I	CYCGRG	1 cut(s)	86
BmgBI	CACGTC	2 cut(s)	1110, 1229
BmgT120I	GGNCC	6 cut(s)	390, 713, 726, 732, 1672, 2024
BmiI	GGNNCC	4 cut(s)	22, 342, 546, 734
BmrFI	CCNGG	6 cut(s)	255, 317, 468, 711, 730, 1756
BmrI	ACTGGG	3 cut(s)	37, 1183, 1738
BmsI	GCATC	8 cut(s)	62, 1222, 1366, 1853, 1866, 1890, 1905, 1929
BmuI	ACTGGG	3 cut(s)	37, 1183, 1738
BpiI	GAAGAC	3 cut(s)	144, 1755, 1848
BplI	GAGNNNNNCTC	4 cut(s)	1756, 1788, 2024, 2056
BpmI	CTGGAG	5 cut(s)	323, 356, 693, 1101, 1929
Bpu10I	CCTNAGC	1 cut(s)	1814
Bpu14I	TTCGAA	1 cut(s)	1825
BpuEI	CTTGAG	1 cut(s)	829
BpuMI	CCSGG	2 cut(s)	255, 468
BsaHI	GRCGYC	4 cut(s)	5, 21, 149, 267
BsaJI	CCNNGG	5 cut(s)	178, 254, 393, 840, 1600
BsaWI	WCCGGW	4 cut(s)	113, 452, 493, 520
BsaXI	ACNNNNNCTCC	2 cut(s)	691, 721
Bsc4I	CCNNNNNNNGG	6 cut(s)	57, 113, 473, 500, 554, 1778
Bse1I	ACTGG	5 cut(s)	43, 818, 1178, 1436, 1733
Bse3DI	GCAATG	1 cut(s)	288
BseAI	TCCGGA	1 cut(s)	113
BseBI	CCWGG	4 cut(s)	317, 711, 730, 1756
BseDI	CCNNGG	5 cut(s)	178, 254, 393, 840, 1600
BseGI	GGATG	8 cut(s)	625, 664, 850, 934, 1060, 1105, 1582, 1868
BseLI	CCNNNNNNNGG	6 cut(s)	57, 113, 473, 500, 554, 1778
BseMI	GCAATG	1 cut(s)	288
BseMII	CTCAG	8 cut(s)	692, 927, 1146, 1818, 1828, 1875, 1950, 2055
BseNI	ACTGG	5 cut(s)	43, 818, 1178, 1436, 1733
BsePI	GCGCGC	1 cut(s)	417
BseRI	GAGGAG	2 cut(s)	138, 365
BseSI	GKGCMC	1 cut(s)	63
BseXI	GCAGC	7 cut(s)	791, 988, 1004, 1168, 1523, 1725, 1728
BsgI	GTGCAG	1 cut(s)	1132
Bsh1236I	CGCG	8 cut(s)	36, 97, 104, 278, 395, 407, 417, 419
Bsh1285I	CGRYCG	1 cut(s)	405
BshFI	GGCC	8 cut(s)	218, 392, 1096, 1197, 1386, 1599, 1674, 2075
BshNI	GGYRCC	1 cut(s)	20
BsiEI	CGRYCG	1 cut(s)	405
BsiHKAI	GWGCWC	2 cut(s)	309, 1012
BsiHKCI	CYCGRG	1 cut(s)	86
BsiSI	CCGG	7 cut(s)	114, 254, 453, 467, 494, 521, 1097
BslFI	GGGAC	1 cut(s)	272
BslI	CCNNNNNNNGG	6 cut(s)	57, 113, 473, 500, 554, 1778
BsmAI	GTCTC	6 cut(s)	1856, 1880, 1919, 1943, 1967, 2053
BsmFI	GGGAC	1 cut(s)	272
BsmI	GAATGC	2 cut(s)	378, 657
BsnI	GGCC	8 cut(s)	218, 392, 1096, 1197, 1386, 1599, 1674, 2075
BsoBI	CYCGRG	1 cut(s)	86
Bsp119I	TTCGAA	1 cut(s)	1825
Bsp1286I	GDGCHC	4 cut(s)	63, 309, 1012, 1405
Bsp13I	TCCGGA	1 cut(s)	113
Bsp1407I	TGTACA	1 cut(s)	1415
Bsp143I	GATC	9 cut(s)	78, 358, 402, 836, 1024, 1125, 1423, 1588, 1723
Bsp19I	CCATGG	1 cut(s)	1600
BspANI	GGCC	8 cut(s)	218, 392, 1096, 1197, 1386, 1599, 1674, 2075
BspCNI	CTCAG	8 cut(s)	691, 928, 1147, 1817, 1827, 1876, 1951, 2054
BspEI	TCCGGA	1 cut(s)	113
BspFNI	CGCG	8 cut(s)	36, 97, 104, 278, 395, 407, 417, 419
BspLI	GGNNCC	4 cut(s)	22, 342, 546, 734
BspMAI	CTGCAG	2 cut(s)	1186, 1315
BspMI	ACCTGC	2 cut(s)	367, 1104
BspPI	GGATC	6 cut(s)	73, 366, 831, 1032, 1418, 1583
BspQI	GCTCTTC	1 cut(s)	1703
BspT104I	TTCGAA	1 cut(s)	1825
BspT107I	GGYRCC	1 cut(s)	20
BsrBI	CCGCTC	2 cut(s)	435, 1648
BsrDI	GCAATG	1 cut(s)	288
BsrGI	TGTACA	1 cut(s)	1415
BsrI	ACTGG	5 cut(s)	43, 818, 1178, 1436, 1733
BssECI	CCNNGG	5 cut(s)	178, 254, 393, 840, 1600
BssHII	GCGCGC	1 cut(s)	417
BssMI	GATC	9 cut(s)	78, 358, 402, 836, 1024, 1125, 1423, 1588, 1723
BssNAI	GTATAC	1 cut(s)	1050
BssNI	GRCGYC	4 cut(s)	5, 21, 149, 267
BssSI	CACGAG	1 cut(s)	1005
BssT1I	CCWWGG	2 cut(s)	840, 1600
Bst1107I	GTATAC	1 cut(s)	1050
Bst2BI	CACGAG	1 cut(s)	1005
Bst2UI	CCWGG	4 cut(s)	317, 711, 730, 1756
Bst4CI	ACNGT	1 cut(s)	2024
Bst6I	CTCTTC	3 cut(s)	894, 1703, 2051
BstACI	GRCGYC	4 cut(s)	5, 21, 149, 267
BstAPI	GCANNNNNTGC	1 cut(s)	1001
BstAUI	TGTACA	1 cut(s)	1415
BstBI	TTCGAA	1 cut(s)	1825
BstC8I	GCNNGC	5 cut(s)	93, 280, 415, 419, 777
BstDEI	CTNAG	8 cut(s)	678, 936, 1155, 1804, 1814, 1884, 1959, 2041
BstDSI	CCRYGG	2 cut(s)	393, 1600
BstENI	CCTNNNNNAGG	1 cut(s)	552
BstF5I	GGATG	8 cut(s)	625, 664, 850, 934, 1060, 1105, 1582, 1868
BstFNI	CGCG	8 cut(s)	36, 97, 104, 278, 395, 407, 417, 419
BstH2I	RGCGCY	1 cut(s)	24
BstHHI	GCGC	7 cut(s)	23, 38, 97, 106, 278, 419, 421
BstKTI	GATC	9 cut(s)	81, 361, 405, 839, 1027, 1128, 1426, 1591, 1726
BstMAI	GTCTC	6 cut(s)	1856, 1880, 1919, 1943, 1967, 2053
BstMBI	GATC	9 cut(s)	78, 358, 402, 836, 1024, 1125, 1423, 1588, 1723
BstMCI	CGRYCG	1 cut(s)	405
BstNI	CCWGG	4 cut(s)	317, 711, 730, 1756
BstNSI	RCATGY	2 cut(s)	992, 2014
BstSCI	CCNGG	6 cut(s)	253, 315, 466, 709, 728, 1754
BstSFI	CTRYAG	2 cut(s)	1182, 1311
BstSLI	GKGCMC	1 cut(s)	63
BstUI	CGCG	8 cut(s)	36, 97, 104, 278, 395, 407, 417, 419
BstV1I	GCAGC	7 cut(s)	791, 988, 1004, 1168, 1523, 1725, 1728
BstV2I	GAAGAC	3 cut(s)	144, 1755, 1848
BstXI	CCANNNNNNTGG	1 cut(s)	723
BstZ17I	GTATAC	1 cut(s)	1050
BsuI	GTATCC	1 cut(s)	1726
BsuRI	GGCC	8 cut(s)	218, 392, 1096, 1197, 1386, 1599, 1674, 2075
BtgI	CCRYGG	2 cut(s)	393, 1600
BtgZI	GCGATG	2 cut(s)	212, 1830
BtrI	CACGTC	2 cut(s)	1110, 1229
BtsCI	GGATG	8 cut(s)	625, 664, 850, 934, 1060, 1105, 1582, 1868
BtsI	GCAGTG	1 cut(s)	1789
BtsIMutI	CAGTG	6 cut(s)	825, 905, 1144, 1515, 1726, 1789
BveI	ACCTGC	2 cut(s)	367, 1104
Cac8I	GCNNGC	5 cut(s)	93, 280, 415, 419, 777
CaiI	CAGNNNCTG	1 cut(s)	1001
CfoI	GCGC	7 cut(s)	23, 38, 97, 106, 278, 419, 421
Cfr13I	GGNCC	6 cut(s)	390, 713, 726, 732, 1672, 2024
Cfr42I	CCGCGG	1 cut(s)	396
CseI	GACGC	1 cut(s)	138
CsiI	ACCWGGT	1 cut(s)	1754
Csp6I	GTAC	5 cut(s)	27, 175, 986, 1171, 1416
CviQI	GTAC	5 cut(s)	27, 175, 986, 1171, 1416
DdeI	CTNAG	8 cut(s)	678, 936, 1155, 1804, 1814, 1884, 1959, 2041
DinI	GGCGCC	1 cut(s)	22
DpnI	GATC	9 cut(s)	80, 360, 404, 838, 1026, 1127, 1425, 1590, 1725
DpnII	GATC	9 cut(s)	78, 358, 402, 836, 1024, 1125, 1423, 1588, 1723
DrdI	GACNNNNNNGTC	1 cut(s)	266
DriI	GACNNNNNGTC	2 cut(s)	711, 724
DseDI	GACNNNNNNGTC	1 cut(s)	266
EaeI	YGGCCR	1 cut(s)	1597
Eam1104I	CTCTTC	3 cut(s)	894, 1703, 2051
Eam1105I	GACNNNNNGTC	2 cut(s)	711, 724
EarI	CTCTTC	3 cut(s)	894, 1703, 2051
EciI	GGCGGA	2 cut(s)	180, 1037
Eco130I	CCWWGG	2 cut(s)	840, 1600
Eco24I	GRGCYC	1 cut(s)	1405
Eco47I	GGWCC	4 cut(s)	713, 726, 732, 2024
Eco57I	CTGAAG	7 cut(s)	777, 848, 929, 1365, 1842, 1953, 1977
Eco88I	CYCGRG	1 cut(s)	86
EcoNI	CCTNNNNNAGG	1 cut(s)	552
EcoRI	GAATTC	1 cut(s)	244
EcoRII	CCWGG	4 cut(s)	315, 709, 728, 1754
EcoT14I	CCWWGG	2 cut(s)	840, 1600
EcoT22I	ATGCAT	1 cut(s)	1237
EcoT38I	GRGCYC	1 cut(s)	1405
EgeI	GGCGCC	1 cut(s)	22
EheI	GGCGCC	1 cut(s)	22
ErhI	CCWWGG	2 cut(s)	840, 1600
FaqI	GGGAC	1 cut(s)	272
FauI	CCCGC	2 cut(s)	271, 744
FauNDI	CATATG	1 cut(s)	1299
FbaI	TGATCA	2 cut(s)	1125, 1723
FblI	GTMKAC	1 cut(s)	1049
FokI	GGATG	8 cut(s)	632, 671, 857, 941, 1067, 1112, 1589, 1855
FriOI	GRGCYC	1 cut(s)	1405
FspBI	CTAG	1 cut(s)	1062
GlaI	GCGC	7 cut(s)	22, 37, 96, 105, 277, 418, 420
GsuI	CTGGAG	5 cut(s)	323, 356, 693, 1101, 1929
HaeII	RGCGCY	1 cut(s)	24
HaeIII	GGCC	8 cut(s)	218, 392, 1096, 1197, 1386, 1599, 1674, 2075
HapII	CCGG	7 cut(s)	114, 254, 453, 467, 494, 521, 1097
HgaI	GACGC	1 cut(s)	138
HhaI	GCGC	7 cut(s)	23, 38, 97, 106, 278, 419, 421
Hin1I	GRCGYC	4 cut(s)	5, 21, 149, 267
Hin6I	GCGC	7 cut(s)	21, 36, 95, 104, 276, 417, 419
HinP1I	GCGC	7 cut(s)	21, 36, 95, 104, 276, 417, 419
HindIII	AAGCTT	2 cut(s)	130, 580
HpaII	CCGG	7 cut(s)	114, 254, 453, 467, 494, 521, 1097
HphI	GGTGA	6 cut(s)	473, 1352, 1490, 1577, 1628, 1733
Hpy166II	GTNNAC	5 cut(s)	942, 1050, 1119, 1256, 1416
Hpy8I	GTNNAC	5 cut(s)	942, 1050, 1119, 1256, 1416
Hpy99I	CGWCG	6 cut(s)	10, 242, 269, 272, 386, 1897
HpyCH4III	ACNGT	1 cut(s)	2024
HpyCH4IV	ACGT	4 cut(s)	267, 1109, 1228, 1484
HpyF3I	CTNAG	8 cut(s)	678, 936, 1155, 1804, 1814, 1884, 1959, 2041
HpySE526I	ACGT	4 cut(s)	267, 1109, 1228, 1484
Hsp92I	GRCGYC	4 cut(s)	5, 21, 149, 267
HspAI	GCGC	7 cut(s)	21, 36, 95, 104, 276, 417, 419
KasI	GGCGCC	1 cut(s)	20
Kpn2I	TCCGGA	1 cut(s)	113
Ksp22I	TGATCA	2 cut(s)	1125, 1723
KspI	CCGCGG	1 cut(s)	396
Kzo9I	GATC	9 cut(s)	78, 358, 402, 836, 1024, 1125, 1423, 1588, 1723
LguI	GCTCTTC	1 cut(s)	1703
LmnI	GCTCC	6 cut(s)	256, 304, 533, 550, 1058, 1204
Lsp1109I	GCAGC	7 cut(s)	791, 988, 1004, 1168, 1523, 1725, 1728
LweI	GCATC	8 cut(s)	62, 1222, 1366, 1853, 1866, 1890, 1905, 1929
MabI	ACCWGGT	1 cut(s)	1754
MaeI	CTAG	1 cut(s)	1062
MaeII	ACGT	4 cut(s)	267, 1109, 1228, 1484
MaeIII	GTNAC	3 cut(s)	1105, 1150, 1565
MalI	GATC	9 cut(s)	80, 360, 404, 838, 1026, 1127, 1425, 1590, 1725
MbiI	CCGCTC	2 cut(s)	435, 1648
MboI	GATC	9 cut(s)	78, 358, 402, 836, 1024, 1125, 1423, 1588, 1723
MfeI	CAATTG	2 cut(s)	537, 1419
MhlI	GDGCHC	4 cut(s)	63, 309, 1012, 1405
MlsI	TGGCCA	1 cut(s)	1599
MluCI	AATT	7 cut(s)	244, 537, 614, 855, 882, 1419, 1998
MluNI	TGGCCA	1 cut(s)	1599
Mly113I	GGCGCC	1 cut(s)	21
MlyI	GAGTC	7 cut(s)	179, 458, 602, 700, 877, 947, 1040
MmeI	TCCRAC	1 cut(s)	1875
Mox20I	TGGCCA	1 cut(s)	1599
Mph1103I	ATGCAT	1 cut(s)	1237
MroI	TCCGGA	1 cut(s)	113
MscI	TGGCCA	1 cut(s)	1599
MslI	CAYNNNNRTG	2 cut(s)	1374, 1701
Msp20I	TGGCCA	1 cut(s)	1599
MspA1I	CMGCKG	2 cut(s)	395, 1719
MspI	CCGG	7 cut(s)	114, 254, 453, 467, 494, 521, 1097
MspR9I	CCNGG	6 cut(s)	255, 317, 468, 711, 730, 1756
MunI	CAATTG	2 cut(s)	537, 1419
Mva1269I	GAATGC	2 cut(s)	378, 657
MvaI	CCWGG	4 cut(s)	317, 711, 730, 1756
MvnI	CGCG	8 cut(s)	36, 97, 104, 278, 395, 407, 417, 419
NarI	GGCGCC	1 cut(s)	21
NciI	CCSGG	2 cut(s)	255, 468
NcoI	CCATGG	1 cut(s)	1600
NdeI	CATATG	1 cut(s)	1299
NdeII	GATC	9 cut(s)	78, 358, 402, 836, 1024, 1125, 1423, 1588, 1723
NlaIV	GGNNCC	4 cut(s)	22, 342, 546, 734
NmeAIII	GCCGAG	1 cut(s)	765
NmuCI	GTSAC	2 cut(s)	1105, 1565
NsiI	ATGCAT	1 cut(s)	1237
NspI	RCATGY	2 cut(s)	992, 2014
NspV	TTCGAA	1 cut(s)	1825
PaeR7I	CTCGAG	1 cut(s)	86
PaqCI	CACCTGC	1 cut(s)	1104
PauI	GCGCGC	1 cut(s)	417
PciI	ACATGT	1 cut(s)	2010
PciSI	GCTCTTC	1 cut(s)	1703
PcsI	WCGNNNNNNNCGW	1 cut(s)	367
PctI	GAATGC	2 cut(s)	378, 657
PfeI	GAWTC	6 cut(s)	298, 331, 364, 1076, 1693, 1767
PflFI	GACNNNGTC	1 cut(s)	1891
PfoI	TCCNGGA	1 cut(s)	728
Ple19I	CGATCG	1 cut(s)	405
PleI	GAGTC	7 cut(s)	178, 457, 601, 700, 876, 946, 1039
PluTI	GGCGCC	1 cut(s)	24
PpsI	GAGTC	7 cut(s)	178, 457, 601, 700, 876, 946, 1039
PscI	ACATGT	1 cut(s)	2010
Psp6I	CCWGG	4 cut(s)	315, 709, 728, 1754
PspGI	CCWGG	4 cut(s)	315, 709, 728, 1754
PspN4I	GGNNCC	4 cut(s)	22, 342, 546, 734
PspPI	GGNCC	6 cut(s)	390, 713, 726, 732, 1672, 2024
PsrI	GAACNNNNNNTAC	2 cut(s)	736, 768
PstI	CTGCAG	2 cut(s)	1186, 1315
PstNI	CAGNNNCTG	1 cut(s)	1001
PsyI	GACNNNGTC	1 cut(s)	1891
PteI	GCGCGC	1 cut(s)	417
PvuI	CGATCG	1 cut(s)	405
RgaI	GCGATCGC	1 cut(s)	405
RsaI	GTAC	5 cut(s)	28, 176, 987, 1172, 1417
RsaNI	GTAC	5 cut(s)	27, 175, 986, 1171, 1416
RseI	CAYNNNNRTG	2 cut(s)	1374, 1701
SacII	CCGCGG	1 cut(s)	396
SapI	GCTCTTC	1 cut(s)	1703
Sau3AI	GATC	9 cut(s)	78, 358, 402, 836, 1024, 1125, 1423, 1588, 1723
Sau96I	GGNCC	6 cut(s)	390, 713, 726, 732, 1672, 2024
ScaI	AGTACT	1 cut(s)	1172
SchI	GAGTC	7 cut(s)	179, 458, 602, 700, 877, 947, 1040
ScrFI	CCNGG	6 cut(s)	255, 317, 468, 711, 730, 1756
SduI	GDGCHC	4 cut(s)	63, 309, 1012, 1405
SexAI	ACCWGGT	1 cut(s)	1754
SfaAI	GCGATCGC	1 cut(s)	405
SfaNI	GCATC	8 cut(s)	62, 1222, 1366, 1853, 1866, 1890, 1905, 1929
SfcI	CTRYAG	2 cut(s)	1182, 1311
SfoI	GGCGCC	1 cut(s)	22
Sfr274I	CTCGAG	1 cut(s)	86
Sfr303I	CCGCGG	1 cut(s)	396
SfuI	TTCGAA	1 cut(s)	1825
SgfI	GCGATCGC	1 cut(s)	405
SgrBI	CCGCGG	1 cut(s)	396
SinI	GGWCC	4 cut(s)	713, 726, 732, 2024
SlaI	CTCGAG	1 cut(s)	86
SmiMI	CAYNNNNRTG	2 cut(s)	1374, 1701
SmlI	CTYRAG	2 cut(s)	86, 808
SmoI	CTYRAG	2 cut(s)	86, 808
Sse9I	AATT	7 cut(s)	244, 537, 614, 855, 882, 1419, 1998
SspDI	GGCGCC	1 cut(s)	20
SspMI	CTAG	1 cut(s)	1062
StyD4I	CCNGG	6 cut(s)	253, 315, 466, 709, 728, 1754
StyI	CCWWGG	2 cut(s)	840, 1600
TaaI	ACNGT	1 cut(s)	2024
TaiI	ACGT	4 cut(s)	270, 1112, 1231, 1487
TaqI	TCGA	6 cut(s)	87, 240, 324, 384, 768, 1825
TasI	AATT	7 cut(s)	244, 537, 614, 855, 882, 1419, 1998
TatI	WGTACW	4 cut(s)	26, 985, 1170, 1415
TauI	GCSGC	9 cut(s)	149, 165, 276, 395, 398, 401, 410, 413, 438
TfiI	GAWTC	6 cut(s)	298, 331, 364, 1076, 1693, 1767
TscAI	CASTG	6 cut(s)	825, 912, 1144, 1522, 1733, 1796
TseFI	GTSAC	2 cut(s)	1105, 1565
TseI	GCWGC	7 cut(s)	779, 992, 1001, 1181, 1536, 1713, 1716
Tsp45I	GTSAC	2 cut(s)	1105, 1565
TspGWI	ACGGA	2 cut(s)	1067, 1254
TspRI	CASTG	6 cut(s)	825, 912, 1144, 1522, 1733, 1796
Tth111I	GACNNNGTC	1 cut(s)	1891
VpaK11BI	GGWCC	4 cut(s)	713, 726, 732, 2024
XagI	CCTNNNNNAGG	1 cut(s)	552
XapI	RAATTY	3 cut(s)	244, 882, 1998
XceI	RCATGY	2 cut(s)	992, 2014
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1205
XhoI	CTCGAG	1 cut(s)	86
XmiI	GTMKAC	1 cut(s)	1049
XspI	CTAG	1 cut(s)	1062
ZraI	GACGTC	1 cut(s)	268
ZrmI	AGTACT	1 cut(s)	1172
Zsp2I	ATGCAT	1 cut(s)	1237

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.