Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr4

Orthogroup ID

OG0002791

Physical Location & Seq

Genomic Coordinates Reverse (-)

18157249 .. 18161729

Gene Structure 4481 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw4G008310.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 870 bp

ATGGCCTTGAGAACAGTGTCGAGGAAGATAGGGAGTAAACTGTTACCCAGGTTTTGTCCTGCATCTCTATTGCATTCTCATGCCACAAGCTTTGGATTCAAGGAAGTACGGGAAGAGGAAAAAAGTCAAATGGTTGGTAATGTCTTCAGCAATGTTGCTTCAAACTATGATACAATGAATGATTTGATGAGTGCAGGATTACACAGATTATGGAAGGATAGATTGGTTTCAAAACTGAATCCTTTTCCTGGAATGAACCATCTTGATGTGGCTGGTGGGACAGGTGATGTTGCTTTCAGAATACTAGACAGTATAAACAGCATCAAACATAGAGCTTTGCTGAATGTTCTTGAAGATGATTTACAGGAAGAAACTAAGGTGTATGTATGTGACATCAATCCCAACATGTTGAATGTTGGTAAAAAGCGGGCCTTGCAGAGAGGTCTTGGAGAAGACAAATCCTTTCTATGGGTGGAGGGAGATGCAGAAGCCTTGAGTTTCGGAGATAATACAATGGATGGTTACACAATTGCATTTGGGATCCGGAATGTCACACACATAGAGAAAGCACTTTCTGAAGCTTATAGGGTACTAAAACGGGGAGGAAGGTTCCTGTGCCTTGAACTCAGCCATGTAGAGGTACCTGTATTCAAAGACTTCTATGACTTTTATTCATTCTCAATCATTCCCACCCTAGGAGAGCTAGTTGCAGGGGATAGAGAATCTTATCAGTACTTGGTAGAGAGTATTCGTCGTTTTCCGCCACAGGAGACATTTGCGTCAATGATTGCAGACGCAGGTTTCCAGAAGGTTGAGTATGAAAATCTAGTTGGAGGAGTGGTAGCGATTCATTCAGGGTTGAAAATTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00130 ko01100 ko01110 map00130 map01100 map01110

Pfam Domains

Protein Families

Ubie_methyltran

Protein Analysis

289

Amino Acids

32.36

Weight (kDa)

6.09

Isoelectric Point (pI)

36.23

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ubie_methyltran	PF01209	40 - 288	6.5e-85	ubiE/COQ5 methyltransferase family
Methyltransf_31	PF13847	83 - 210	1.7e-07	Methyltransferase domain
Methyltransf_12	PF08242	88 - 204	3.4e-07	Methyltransferase domain
Methyltransf_25	PF13649	121 - 202	1.2e-11	Methyltransferase domain
Methyltransf_11	PF08241	125 - 206	7.7e-14	Methyltransferase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002791)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G57300 AT5G57300 AT5G57300 AT5G57300
fragaria_vesca	FvH4_4g07660 FvH4_4g07660 FvH4_4g07660 FvH4_4g07660 FvH4_4g07660 FvH4_4g07660 FvH4_4g07660 FvH4_4g07660
malus_domestica	MD03G1035800.v1.1 MD03G1036000.v1.1 MD13G1245000.v1.1 MD16G1253300.v1.1
prunus_persica	Prupe.1G079700_v2.0.a1 Prupe.1G079700_v2.0.a1
pyrus_communis	pycom13g21600
rosa_chinensis	RchiOBHm_Chr4g0400331 RchiOBHm_Chr4g0400411 RchiOBHm_Chr4g0400471 RchiOBHm_Chr4g0400591 RchiOBHm_Chr4g0400601 RchiOBHm_Chr4g0400651 RchiOBHm_Chr4g0400661
rosa_laevigata	RLG00000009189
rosa_multiflora	Rmu_sc0003957.1_g000001
rosa_roxburghii	Rroxscaffold_5G00345430
rosa_rugosa	Rorug04G0024900 Rorug04G0025000
rosa_samantha	Rh4AG101200 Rh4AG101300 Rh4AG102600 Rh4BG097900 Rh4CG110900 Rh4DG094600 Rh7BG256500
rosa_wichuraiana	Rw4G008310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	778
Acc36I	ACCTGC	1 cut(s)	788
Acc65I	GGTACC	1 cut(s)	640
AccB1I	GGYRCC	1 cut(s)	640
AccIII	TCCGGA	1 cut(s)	543
AciI	CCGC	2 cut(s)	427, 761
AclWI	GGATC	2 cut(s)	535, 548
AcsI	RAATTY	1 cut(s)	864
AcuI	CTGAAG	2 cut(s)	130, 597
AfaI	GTAC	4 cut(s)	108, 591, 642, 734
AfiI	CCNNNNNNNGG	4 cut(s)	248, 468, 637, 695
AflIII	ACRYGT	1 cut(s)	405
AgsI	TTSAA	8 cut(s)	100, 162, 231, 353, 412, 623, 652, 862
AjnI	CCWGG	2 cut(s)	47, 247
AjuI	GAANNNNNNNTTGG	4 cut(s)	206, 238, 813, 845
AluBI	AGCT	4 cut(s)	90, 335, 581, 703
AluI	AGCT	4 cut(s)	90, 335, 581, 703
Alw26I	GTCTC	1 cut(s)	764
AlwI	GGATC	2 cut(s)	535, 548
Aor13HI	TCCGGA	1 cut(s)	543
AoxI	GGCC	2 cut(s)	3, 429
ApoI	RAATTY	1 cut(s)	864
Asp718I	GGTACC	1 cut(s)	640
AspA2I	CCTAGG	1 cut(s)	694
AspS9I	GGNCC	1 cut(s)	429
AsuHPI	GGTGA	1 cut(s)	296
AvrII	CCTAGG	1 cut(s)	694
BamHI	GGATCC	1 cut(s)	540
BanI	GGYRCC	1 cut(s)	640
BarI	GAAGNNNNNNTAC	2 cut(s)	345, 377
BbsI	GAAGAC	2 cut(s)	136, 459
BccI	CCATC	2 cut(s)	267, 512
BciT130I	CCWGG	2 cut(s)	49, 249
BcoDI	GTCTC	1 cut(s)	764
BfaI	CTAG	4 cut(s)	305, 695, 704, 827
BfuAI	ACCTGC	1 cut(s)	788
BlnI	CCTAGG	1 cut(s)	694
BmcAI	AGTACT	1 cut(s)	734
Bme1390I	CCNGG	2 cut(s)	49, 249
BmgT120I	GGNCC	1 cut(s)	429
BmiI	GGNNCC	3 cut(s)	542, 611, 642
BmrFI	CCNGG	2 cut(s)	49, 249
BmsI	GCATC	3 cut(s)	71, 330, 472
BpiI	GAAGAC	2 cut(s)	136, 459
BpuEI	CTTGAG	2 cut(s)	28, 514
BsaJI	CCNNGG	2 cut(s)	47, 694
BsaWI	WCCGGW	1 cut(s)	543
BsaXI	ACNNNNNCTCC	4 cut(s)	690, 720, 825, 855
Bsc4I	CCNNNNNNNGG	4 cut(s)	248, 468, 637, 695
Bse3DI	GCAATG	1 cut(s)	157
BseAI	TCCGGA	1 cut(s)	543
BseBI	CCWGG	2 cut(s)	49, 249
BseDI	CCNNGG	2 cut(s)	47, 694
BseGI	GGATG	1 cut(s)	523
BseLI	CCNNNNNNNGG	4 cut(s)	248, 468, 637, 695
BseMI	GCAATG	1 cut(s)	157
BseMII	CTCAG	1 cut(s)	640
BseRI	GAGGAG	1 cut(s)	849
BsgI	GTGCAG	1 cut(s)	213
BshFI	GGCC	2 cut(s)	5, 431
BshNI	GGYRCC	1 cut(s)	640
BsiSI	CCGG	1 cut(s)	544
BslFI	GGGAC	1 cut(s)	292
BslI	CCNNNNNNNGG	4 cut(s)	248, 468, 637, 695
BsmAI	GTCTC	1 cut(s)	764
BsmFI	GGGAC	1 cut(s)	292
BsmI	GAATGC	1 cut(s)	73
BsnI	GGCC	2 cut(s)	5, 431
Bsp13I	TCCGGA	1 cut(s)	543
Bsp143I	GATC	1 cut(s)	540
BspACI	CCGC	2 cut(s)	427, 761
BspANI	GGCC	2 cut(s)	5, 431
BspCNI	CTCAG	1 cut(s)	639
BspEI	TCCGGA	1 cut(s)	543
BspLI	GGNNCC	3 cut(s)	542, 611, 642
BspMI	ACCTGC	1 cut(s)	788
BspPI	GGATC	2 cut(s)	535, 548
BspT107I	GGYRCC	1 cut(s)	640
BsrDI	GCAATG	1 cut(s)	157
BssECI	CCNNGG	2 cut(s)	47, 694
BssMI	GATC	1 cut(s)	540
BssT1I	CCWWGG	1 cut(s)	694
Bst2UI	CCWGG	2 cut(s)	49, 249
Bst4CI	ACNGT	3 cut(s)	16, 42, 311
Bst6I	CTCTTC	1 cut(s)	108
BstC8I	GCNNGC	1 cut(s)	429
BstDEI	CTNAG	2 cut(s)	375, 626
BstF5I	GGATG	1 cut(s)	523
BstKTI	GATC	1 cut(s)	543
BstMAI	GTCTC	1 cut(s)	764
BstMBI	GATC	1 cut(s)	540
BstMWI	GCNNNNNNNGC	1 cut(s)	433
BstNI	CCWGG	2 cut(s)	49, 249
BstNSI	RCATGY	1 cut(s)	409
BstSCI	CCNGG	2 cut(s)	47, 247
BstV2I	GAAGAC	2 cut(s)	136, 459
BstX2I	RGATCY	1 cut(s)	540
BstYI	RGATCY	1 cut(s)	540
BsuRI	GGCC	2 cut(s)	5, 431
BtsCI	GGATG	1 cut(s)	523
BtsIMutI	CAGTG	1 cut(s)	21
BveI	ACCTGC	1 cut(s)	788
Cac8I	GCNNGC	1 cut(s)	429
Cfr13I	GGNCC	1 cut(s)	429
CseI	GACGC	2 cut(s)	768, 803
Csp6I	GTAC	4 cut(s)	107, 590, 641, 733
CspCI	CAANNNNNGTGG	2 cut(s)	73, 108
CviAII	CATG	3 cut(s)	80, 406, 632
CviJI	RGCY	9 cut(s)	5, 90, 272, 335, 431, 491, 581, 630, 703
CviKI_1	RGCY	9 cut(s)	5, 90, 272, 335, 431, 491, 581, 630, 703
CviQI	GTAC	4 cut(s)	107, 590, 641, 733
DdeI	CTNAG	2 cut(s)	375, 626
DpnI	GATC	1 cut(s)	542
DpnII	GATC	1 cut(s)	540
DrdI	GACNNNNNNGTC	1 cut(s)	778
DseDI	GACNNNNNNGTC	1 cut(s)	778
Eam1104I	CTCTTC	1 cut(s)	108
EarI	CTCTTC	1 cut(s)	108
EciI	GGCGGA	1 cut(s)	750
Eco130I	CCWWGG	1 cut(s)	694
Eco57I	CTGAAG	2 cut(s)	130, 597
EcoRII	CCWGG	2 cut(s)	47, 247
EcoT14I	CCWWGG	1 cut(s)	694
ErhI	CCWWGG	1 cut(s)	694
FaeI	CATG	3 cut(s)	83, 409, 635
FalI	AAGNNNNNCTT	2 cut(s)	416, 448
FaqI	GGGAC	1 cut(s)	292
FatI	CATG	3 cut(s)	79, 405, 631
FauI	CCCGC	1 cut(s)	420
FokI	GGATG	1 cut(s)	530
FspBI	CTAG	4 cut(s)	305, 695, 704, 827
HaeIII	GGCC	2 cut(s)	5, 431
HapII	CCGG	1 cut(s)	544
HgaI	GACGC	2 cut(s)	768, 803
Hin1II	CATG	3 cut(s)	83, 409, 635
HindIII	AAGCTT	2 cut(s)	88, 579
HinfI	GANTC	4 cut(s)	96, 238, 722, 847
HpaII	CCGG	1 cut(s)	544
HphI	GGTGA	1 cut(s)	296
Hpy166II	GTNNAC	1 cut(s)	38
Hpy188I	TCNGA	3 cut(s)	299, 503, 577
Hpy188III	TCNNGA	4 cut(s)	263, 350, 544, 805
Hpy8I	GTNNAC	1 cut(s)	38
Hpy99I	CGWCG	1 cut(s)	756
HpyAV	CCTTC	3 cut(s)	208, 600, 802
HpyCH4III	ACNGT	3 cut(s)	16, 42, 311
HpyCH4V	TGCA	8 cut(s)	62, 73, 194, 436, 485, 533, 710, 791
HpyF10VI	GCNNNNNNNGC	1 cut(s)	433
HpyF3I	CTNAG	2 cut(s)	375, 626
Hsp92II	CATG	3 cut(s)	83, 409, 635
Kpn2I	TCCGGA	1 cut(s)	543
KpnI	GGTACC	1 cut(s)	644
Kzo9I	GATC	1 cut(s)	540
LweI	GCATC	3 cut(s)	71, 330, 472
MaeI	CTAG	4 cut(s)	305, 695, 704, 827
MaeIII	GTNAC	4 cut(s)	42, 389, 521, 550
MalI	GATC	1 cut(s)	542
MboI	GATC	1 cut(s)	540
MboII	GAAGA	6 cut(s)	37, 125, 136, 365, 380, 464
MfeI	CAATTG	1 cut(s)	528
MflI	RGATCY	1 cut(s)	540
MluCI	AATT	2 cut(s)	528, 864
MmeI	TCCRAC	1 cut(s)	811
MnlI	CCTC	7 cut(s)	15, 109, 434, 469, 596, 631, 827
MroI	TCCGGA	1 cut(s)	543
MslI	CAYNNNNRTG	2 cut(s)	78, 264
MspI	CCGG	1 cut(s)	544
MspR9I	CCNGG	2 cut(s)	49, 249
MunI	CAATTG	1 cut(s)	528
Mva1269I	GAATGC	1 cut(s)	73
MvaI	CCWGG	2 cut(s)	49, 249
MwoI	GCNNNNNNNGC	1 cut(s)	433
NdeII	GATC	1 cut(s)	540
NlaIII	CATG	3 cut(s)	83, 409, 635
NlaIV	GGNNCC	3 cut(s)	542, 611, 642
NmuCI	GTSAC	2 cut(s)	389, 550
NspI	RCATGY	1 cut(s)	409
PciI	ACATGT	1 cut(s)	405
PctI	GAATGC	1 cut(s)	73
PfeI	GAWTC	4 cut(s)	96, 238, 722, 847
PfoI	TCCNGGA	1 cut(s)	247
PscI	ACATGT	1 cut(s)	405
Psp6I	CCWGG	2 cut(s)	47, 247
PspGI	CCWGG	2 cut(s)	47, 247
PspN4I	GGNNCC	3 cut(s)	542, 611, 642
PspPI	GGNCC	1 cut(s)	429
PsuI	RGATCY	1 cut(s)	540
RsaI	GTAC	4 cut(s)	108, 591, 642, 734
RsaNI	GTAC	4 cut(s)	107, 590, 641, 733
RseI	CAYNNNNRTG	2 cut(s)	78, 264
Sau3AI	GATC	1 cut(s)	540
Sau96I	GGNCC	1 cut(s)	429
ScaI	AGTACT	1 cut(s)	734
ScrFI	CCNGG	2 cut(s)	49, 249
SfaNI	GCATC	3 cut(s)	71, 330, 472
SmiMI	CAYNNNNRTG	2 cut(s)	78, 264
SmlI	CTYRAG	2 cut(s)	7, 493
SmoI	CTYRAG	2 cut(s)	7, 493
Sse9I	AATT	2 cut(s)	528, 864
SsiI	CCGC	2 cut(s)	427, 761
SspMI	CTAG	4 cut(s)	305, 695, 704, 827
StyD4I	CCNGG	2 cut(s)	47, 247
StyI	CCWWGG	1 cut(s)	694
TaaI	ACNGT	3 cut(s)	16, 42, 311
TaqI	TCGA	1 cut(s)	20
TasI	AATT	2 cut(s)	528, 864
TatI	WGTACW	1 cut(s)	732
TfiI	GAWTC	4 cut(s)	96, 238, 722, 847
TscAI	CASTG	1 cut(s)	21
TseFI	GTSAC	2 cut(s)	389, 550
Tsp45I	GTSAC	2 cut(s)	389, 550
TspDTI	ATGAA	5 cut(s)	191, 269, 663, 834, 839
TspRI	CASTG	1 cut(s)	21
XapI	RAATTY	1 cut(s)	864
XceI	RCATGY	1 cut(s)	409
XmaJI	CCTAGG	1 cut(s)	694
XspI	CTAG	4 cut(s)	305, 695, 704, 827
ZrmI	AGTACT	1 cut(s)	734

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.