Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0002791

Physical Location & Seq

Genomic Coordinates Forward (+)

48556727 .. 48563086

Gene Structure 6360 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000009189

Sequence Viewer

CDS Protein Promoter (2k)

Length: 984 bp

ATGTTTGAAAACAAAATGACAACGTTGTTTCCAAATTCGCCAAAGCAGGAAAGAAATATTGAGTTCCACTCTTCTTATTCTTCGGTTCTTCCTCTCTTAACTGTGTATACAGTTATGGCCTTGAGAACAGTGACGAGGAAGATAGGGAGTAAACTGTTACCCAGGTTTTGTCCTGCATCTCTATTGCATTCTCATGCAACAAGCTTTGGATTCAAGGAAGTACGGGAAGAGGAAAAAAGTCAAATGGTTGGTAATGTCTTCAGCAATGTTGCTTCAAACTATGACACAATGAACGATTTGATGAGTGTAGGATTACACAGATTATGGAAGGATAGATTGGTTTCCAAACTGAATCCTTTTCCTGGAATGAACCATCTTGATGTGGCTGGTGGAACAGGTGATGTTGCTTTCAGAATACTAGACAGCATAAACAGCATCAAACGTAGAGCTTTGCTGAATGTTCTTGAAGATGATTTACAGGAAGAAACTAAGGTGTATGTATGTGACATCAATCCCAACATGTTGAATGTGGGTAAAAAGCGGGCCTTGCAGAGAGGTCTTGGAGAAGATAAATCCCTTCTATGGGTGGAGGGAGATGCAGAAGCCCTGAGTTTCGGAGATAATACAATGGATGGTTACACAATTGCATTTGGGATCCGGAATGTCACACACATAGAGAAAGCACTTTCTGAAGCTTACAGGGTACTAAAACGGGGAGGAAGGTTCCTGTGCCTTGAACTCAGCCATGTAGATGTACCTGTATTCAAAGACTTCTATGACTTTTATTCATTCTCAATCATTCCCACCCTAGGAGAGCTAGTTGCAGGAGATAGAGAATCTTATCAGTACTTGGTAGAGAGTATTCGTCGTTTTCCACCACAGGAGACATTTGCTTCAATGATTGCAGATGCAGGTTTCCAGAAGGTTGAGTATGAAAATCTAGTTGGAGGAGTGGTAGCGATTCATTCAGGGTTGAAAGTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00130 ko01100 ko01110 map00130 map01100 map01110

Pfam Domains

Protein Families

Ubie_methyltran

Protein Analysis

328

Amino Acids

36.79

Weight (kDa)

6.27

Isoelectric Point (pI)

43.58

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ubie_methyltran	PF01209	78 - 326	5.1e-85	ubiE/COQ5 methyltransferase family
Methyltransf_31	PF13847	121 - 248	6e-07	Methyltransferase domain
Methyltransf_12	PF08242	126 - 242	3.3e-07	Methyltransferase domain
Methyltransf_25	PF13649	159 - 240	1.4e-11	Methyltransferase domain
Methyltransf_11	PF08241	163 - 244	8.3e-14	Methyltransferase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0002791)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G57300 AT5G57300 AT5G57300 AT5G57300
fragaria_vesca	FvH4_4g07660 FvH4_4g07660 FvH4_4g07660 FvH4_4g07660 FvH4_4g07660 FvH4_4g07660 FvH4_4g07660 FvH4_4g07660
malus_domestica	MD03G1035800.v1.1 MD03G1036000.v1.1 MD13G1245000.v1.1 MD16G1253300.v1.1
prunus_persica	Prupe.1G079700_v2.0.a1 Prupe.1G079700_v2.0.a1
pyrus_communis	pycom13g21600
rosa_chinensis	RchiOBHm_Chr4g0400331 RchiOBHm_Chr4g0400411 RchiOBHm_Chr4g0400471 RchiOBHm_Chr4g0400591 RchiOBHm_Chr4g0400601 RchiOBHm_Chr4g0400651 RchiOBHm_Chr4g0400661
rosa_laevigata	RLG00000009189
rosa_multiflora	Rmu_sc0003957.1_g000001
rosa_roxburghii	Rroxscaffold_5G00345430
rosa_rugosa	Rorug04G0024900 Rorug04G0025000
rosa_samantha	Rh4AG101200 Rh4AG101300 Rh4AG102600 Rh4BG097900 Rh4CG110900 Rh4DG094600 Rh7BG256500
rosa_wichuraiana	Rw4G008310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	902
AccI	GTMKAC	1 cut(s)	107
AccIII	TCCGGA	1 cut(s)	657
AciI	CCGC	1 cut(s)	541
AclI	AACGTT	1 cut(s)	23
AclWI	GGATC	2 cut(s)	649, 662
AcsI	RAATTY	1 cut(s)	34
AcuI	CTGAAG	2 cut(s)	244, 711
AfaI	GTAC	4 cut(s)	222, 705, 756, 848
AfiI	CCNNNNNNNGG	4 cut(s)	362, 582, 583, 809
AflIII	ACRYGT	1 cut(s)	519
AgsI	TTSAA	9 cut(s)	8, 214, 276, 467, 526, 737, 766, 897, 976
AjnI	CCWGG	2 cut(s)	161, 361
AjuI	GAANNNNNNNTTGG	4 cut(s)	320, 352, 927, 959
AluBI	AGCT	4 cut(s)	204, 449, 695, 817
AluI	AGCT	4 cut(s)	204, 449, 695, 817
Alw26I	GTCTC	1 cut(s)	878
AlwI	GGATC	2 cut(s)	649, 662
Aor13HI	TCCGGA	1 cut(s)	657
AoxI	GGCC	2 cut(s)	117, 543
ApoI	RAATTY	1 cut(s)	34
AspA2I	CCTAGG	1 cut(s)	808
AspS9I	GGNCC	1 cut(s)	543
AsuHPI	GGTGA	1 cut(s)	410
AvrII	CCTAGG	1 cut(s)	808
BamHI	GGATCC	1 cut(s)	654
BarI	GAAGNNNNNNTAC	2 cut(s)	459, 491
BbsI	GAAGAC	1 cut(s)	250
BccI	CCATC	2 cut(s)	381, 626
BciT130I	CCWGG	2 cut(s)	163, 363
BcoDI	GTCTC	1 cut(s)	878
BfaI	CTAG	4 cut(s)	419, 809, 818, 941
BfuAI	ACCTGC	1 cut(s)	902
BlnI	CCTAGG	1 cut(s)	808
BmcAI	AGTACT	1 cut(s)	848
Bme1390I	CCNGG	2 cut(s)	163, 363
BmgT120I	GGNCC	1 cut(s)	543
BmiI	GGNNCC	2 cut(s)	656, 725
BmrFI	CCNGG	2 cut(s)	163, 363
BmsI	GCATC	4 cut(s)	185, 444, 586, 898
BpiI	GAAGAC	1 cut(s)	250
BplI	GAGNNNNNCTC	2 cut(s)	53, 85
BpuEI	CTTGAG	1 cut(s)	142
BsaJI	CCNNGG	2 cut(s)	161, 808
BsaWI	WCCGGW	1 cut(s)	657
BsaXI	ACNNNNNCTCC	4 cut(s)	804, 834, 939, 969
Bsc4I	CCNNNNNNNGG	4 cut(s)	362, 582, 583, 809
Bse3DI	GCAATG	1 cut(s)	271
BseAI	TCCGGA	1 cut(s)	657
BseBI	CCWGG	2 cut(s)	163, 363
BseDI	CCNNGG	2 cut(s)	161, 808
BseGI	GGATG	1 cut(s)	637
BseLI	CCNNNNNNNGG	4 cut(s)	362, 582, 583, 809
BseMI	GCAATG	1 cut(s)	271
BseMII	CTCAG	2 cut(s)	599, 754
BseRI	GAGGAG	1 cut(s)	963
BshFI	GGCC	2 cut(s)	119, 545
BsiSI	CCGG	1 cut(s)	658
BslI	CCNNNNNNNGG	4 cut(s)	362, 582, 583, 809
BsmAI	GTCTC	1 cut(s)	878
BsmI	GAATGC	1 cut(s)	187
BsnI	GGCC	2 cut(s)	119, 545
Bsp13I	TCCGGA	1 cut(s)	657
Bsp143I	GATC	1 cut(s)	654
BspACI	CCGC	1 cut(s)	541
BspANI	GGCC	2 cut(s)	119, 545
BspCNI	CTCAG	2 cut(s)	600, 753
BspEI	TCCGGA	1 cut(s)	657
BspLI	GGNNCC	2 cut(s)	656, 725
BspMI	ACCTGC	1 cut(s)	902
BspPI	GGATC	2 cut(s)	649, 662
BsrDI	GCAATG	1 cut(s)	271
BssECI	CCNNGG	2 cut(s)	161, 808
BssMI	GATC	1 cut(s)	654
BssNAI	GTATAC	1 cut(s)	108
BssT1I	CCWWGG	1 cut(s)	808
Bst1107I	GTATAC	1 cut(s)	108
Bst2UI	CCWGG	2 cut(s)	163, 363
Bst4CI	ACNGT	4 cut(s)	103, 112, 130, 156
Bst6I	CTCTTC	2 cut(s)	76, 222
BstC8I	GCNNGC	1 cut(s)	543
BstDEI	CTNAG	3 cut(s)	489, 608, 740
BstF5I	GGATG	1 cut(s)	637
BstKTI	GATC	1 cut(s)	657
BstMAI	GTCTC	1 cut(s)	878
BstMBI	GATC	1 cut(s)	654
BstMWI	GCNNNNNNNGC	2 cut(s)	432, 547
BstNI	CCWGG	2 cut(s)	163, 363
BstNSI	RCATGY	1 cut(s)	523
BstSCI	CCNGG	2 cut(s)	161, 361
BstV2I	GAAGAC	1 cut(s)	250
BstX2I	RGATCY	1 cut(s)	654
BstYI	RGATCY	1 cut(s)	654
BstZ17I	GTATAC	1 cut(s)	108
BsuRI	GGCC	2 cut(s)	119, 545
BtsCI	GGATG	1 cut(s)	637
BtsIMutI	CAGTG	1 cut(s)	135
BveI	ACCTGC	1 cut(s)	902
Cac8I	GCNNGC	1 cut(s)	543
Cfr13I	GGNCC	1 cut(s)	543
Csp6I	GTAC	4 cut(s)	221, 704, 755, 847
CviAII	CATG	3 cut(s)	194, 520, 746
CviJI	RGCY	9 cut(s)	119, 204, 386, 449, 545, 605, 695, 744, 817
CviKI_1	RGCY	9 cut(s)	119, 204, 386, 449, 545, 605, 695, 744, 817
CviQI	GTAC	4 cut(s)	221, 704, 755, 847
DdeI	CTNAG	3 cut(s)	489, 608, 740
DpnI	GATC	1 cut(s)	656
DpnII	GATC	1 cut(s)	654
Eam1104I	CTCTTC	2 cut(s)	76, 222
EarI	CTCTTC	2 cut(s)	76, 222
Eco130I	CCWWGG	1 cut(s)	808
Eco57I	CTGAAG	2 cut(s)	244, 711
EcoRII	CCWGG	2 cut(s)	161, 361
EcoT14I	CCWWGG	1 cut(s)	808
ErhI	CCWWGG	1 cut(s)	808
FaeI	CATG	3 cut(s)	197, 523, 749
FalI	AAGNNNNNCTT	2 cut(s)	530, 562
FatI	CATG	3 cut(s)	193, 519, 745
FauI	CCCGC	1 cut(s)	534
FblI	GTMKAC	1 cut(s)	107
FokI	GGATG	1 cut(s)	644
FspBI	CTAG	4 cut(s)	419, 809, 818, 941
HaeIII	GGCC	2 cut(s)	119, 545
HapII	CCGG	1 cut(s)	658
Hin1II	CATG	3 cut(s)	197, 523, 749
HindIII	AAGCTT	2 cut(s)	202, 693
HinfI	GANTC	4 cut(s)	210, 352, 836, 961
HpaII	CCGG	1 cut(s)	658
HphI	GGTGA	1 cut(s)	410
Hpy166II	GTNNAC	2 cut(s)	108, 152
Hpy188I	TCNGA	3 cut(s)	413, 617, 691
Hpy188III	TCNNGA	4 cut(s)	377, 464, 658, 919
Hpy8I	GTNNAC	2 cut(s)	108, 152
Hpy99I	CGWCG	1 cut(s)	870
HpyAV	CCTTC	4 cut(s)	322, 587, 714, 916
HpyCH4III	ACNGT	4 cut(s)	103, 112, 130, 156
HpyCH4IV	ACGT	2 cut(s)	23, 442
HpyCH4V	TGCA	9 cut(s)	176, 187, 197, 550, 599, 647, 824, 905, 911
HpyF10VI	GCNNNNNNNGC	2 cut(s)	432, 547
HpyF3I	CTNAG	3 cut(s)	489, 608, 740
HpySE526I	ACGT	2 cut(s)	23, 442
Hsp92II	CATG	3 cut(s)	197, 523, 749
Kpn2I	TCCGGA	1 cut(s)	657
Kzo9I	GATC	1 cut(s)	654
LweI	GCATC	4 cut(s)	185, 444, 586, 898
MaeI	CTAG	4 cut(s)	419, 809, 818, 941
MaeII	ACGT	2 cut(s)	23, 442
MaeIII	GTNAC	5 cut(s)	130, 156, 503, 635, 664
MalI	GATC	1 cut(s)	656
MboI	GATC	1 cut(s)	654
MboII	GAAGA	9 cut(s)	63, 72, 80, 151, 239, 250, 479, 494, 578
MfeI	CAATTG	1 cut(s)	642
MflI	RGATCY	1 cut(s)	654
MluCI	AATT	2 cut(s)	34, 642
MmeI	TCCRAC	1 cut(s)	925
MnlI	CCTC	7 cut(s)	102, 129, 223, 548, 583, 710, 941
MroI	TCCGGA	1 cut(s)	657
MseI	TTAA	1 cut(s)	98
MslI	CAYNNNNRTG	3 cut(s)	192, 378, 750
MspI	CCGG	1 cut(s)	658
MspR9I	CCNGG	2 cut(s)	163, 363
MunI	CAATTG	1 cut(s)	642
Mva1269I	GAATGC	1 cut(s)	187
MvaI	CCWGG	2 cut(s)	163, 363
MwoI	GCNNNNNNNGC	2 cut(s)	432, 547
NdeII	GATC	1 cut(s)	654
NlaIII	CATG	3 cut(s)	197, 523, 749
NlaIV	GGNNCC	2 cut(s)	656, 725
NmuCI	GTSAC	3 cut(s)	130, 503, 664
NspI	RCATGY	1 cut(s)	523
PciI	ACATGT	1 cut(s)	519
PctI	GAATGC	1 cut(s)	187
PfeI	GAWTC	4 cut(s)	210, 352, 836, 961
PfoI	TCCNGGA	1 cut(s)	361
PscI	ACATGT	1 cut(s)	519
Psp1406I	AACGTT	1 cut(s)	23
Psp6I	CCWGG	2 cut(s)	161, 361
PspGI	CCWGG	2 cut(s)	161, 361
PspN4I	GGNNCC	2 cut(s)	656, 725
PspPI	GGNCC	1 cut(s)	543
PsuI	RGATCY	1 cut(s)	654
RsaI	GTAC	4 cut(s)	222, 705, 756, 848
RsaNI	GTAC	4 cut(s)	221, 704, 755, 847
RseI	CAYNNNNRTG	3 cut(s)	192, 378, 750
SaqAI	TTAA	1 cut(s)	98
Sau3AI	GATC	1 cut(s)	654
Sau96I	GGNCC	1 cut(s)	543
ScaI	AGTACT	1 cut(s)	848
ScrFI	CCNGG	2 cut(s)	163, 363
SfaNI	GCATC	4 cut(s)	185, 444, 586, 898
SmiMI	CAYNNNNRTG	3 cut(s)	192, 378, 750
SmlI	CTYRAG	1 cut(s)	121
SmoI	CTYRAG	1 cut(s)	121
Sse9I	AATT	2 cut(s)	34, 642
SsiI	CCGC	1 cut(s)	541
SspI	AATATT	1 cut(s)	58
SspMI	CTAG	4 cut(s)	419, 809, 818, 941
StyD4I	CCNGG	2 cut(s)	161, 361
StyI	CCWWGG	1 cut(s)	808
TaaI	ACNGT	4 cut(s)	103, 112, 130, 156
TaiI	ACGT	2 cut(s)	26, 445
TasI	AATT	2 cut(s)	34, 642
TatI	WGTACW	1 cut(s)	846
TfiI	GAWTC	4 cut(s)	210, 352, 836, 961
Tru1I	TTAA	1 cut(s)	98
Tru9I	TTAA	1 cut(s)	98
TscAI	CASTG	1 cut(s)	135
TseFI	GTSAC	3 cut(s)	130, 503, 664
Tsp45I	GTSAC	3 cut(s)	130, 503, 664
TspDTI	ATGAA	5 cut(s)	305, 383, 777, 948, 953
TspRI	CASTG	1 cut(s)	135
XapI	RAATTY	1 cut(s)	34
XceI	RCATGY	1 cut(s)	523
XmaJI	CCTAGG	1 cut(s)	808
XmiI	GTMKAC	1 cut(s)	107
XspI	CTAG	4 cut(s)	419, 809, 818, 941
ZrmI	AGTACT	1 cut(s)	848

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.