Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr03

Orthogroup ID

OG0002791

Physical Location & Seq

Genomic Coordinates Forward (+)

2848429 .. 2849168

Gene Structure 740 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD03G1035800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 375 bp

ATGGCCTTGAGAACAGTGACGAGGAAGTCAGGGAGTAAACTATTACCCAGGTTTTCTCCTGCTGCTCTATTGCATTCACATGCTACAAGCTTTGGATTTAAAGAAGTAAGGGAAGAGGAAAAAAGTCGAATGGTTGGTAATGTCTTCAGCAATGTTGCTTCGAACTATGATCTAATGAATGATGTGATGAGTGGAGGATTACACAGATTATGGAAGGATAGATTAGTTTCCAAACTGAATCCTTTCCCTGGAATGAAGCATCTTGATGTGGCTGGTGGGACAGGTAAAGTTCGTGACATGCAATCCAGTTTGAATTTTTATACGTCCAACTTTTGCATACTGTTGGTTACCTGTGCTCAGCTTTGGGCATTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00130 ko01100 ko01110 map00130 map01100 map01110

Pfam Domains

Protein Families

Ubie_methyltran

Protein Analysis

125

Amino Acids

13.87

Weight (kDa)

9.86

Isoelectric Point (pI)

35.14

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ubie_methyltran	PF01209	40 - 97	6e-16	ubiE/COQ5 methyltransferase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0002791)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G57300 AT5G57300 AT5G57300 AT5G57300
fragaria_vesca	FvH4_4g07660 FvH4_4g07660 FvH4_4g07660 FvH4_4g07660 FvH4_4g07660 FvH4_4g07660 FvH4_4g07660 FvH4_4g07660
malus_domestica	MD03G1035800.v1.1 MD03G1036000.v1.1 MD13G1245000.v1.1 MD16G1253300.v1.1
prunus_persica	Prupe.1G079700_v2.0.a1 Prupe.1G079700_v2.0.a1
pyrus_communis	pycom13g21600
rosa_chinensis	RchiOBHm_Chr4g0400331 RchiOBHm_Chr4g0400411 RchiOBHm_Chr4g0400471 RchiOBHm_Chr4g0400591 RchiOBHm_Chr4g0400601 RchiOBHm_Chr4g0400651 RchiOBHm_Chr4g0400661
rosa_laevigata	RLG00000009189
rosa_multiflora	Rmu_sc0003957.1_g000001
rosa_roxburghii	Rroxscaffold_5G00345430
rosa_rugosa	Rorug04G0024900 Rorug04G0025000
rosa_samantha	Rh4AG101200 Rh4AG101300 Rh4AG102600 Rh4BG097900 Rh4CG110900 Rh4DG094600 Rh7BG256500
rosa_wichuraiana	Rw4G008310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	25
AcsI	RAATTY	1 cut(s)	313
AcuI	CTGAAG	1 cut(s)	130
AfiI	CCNNNNNNNGG	1 cut(s)	248
AgsI	TTSAA	1 cut(s)	313
AjnI	CCWGG	2 cut(s)	47, 247
AluBI	AGCT	2 cut(s)	90, 361
AluI	AGCT	2 cut(s)	90, 361
Alw21I	GWGCWC	1 cut(s)	358
AoxI	GGCC	1 cut(s)	3
ApeKI	GCWGC	1 cut(s)	62
ApoI	RAATTY	1 cut(s)	313
Asp700I	GAANNNNTTC	1 cut(s)	242
AsuII	TTCGAA	1 cut(s)	161
BbsI	GAAGAC	1 cut(s)	136
Bbv12I	GWGCWC	1 cut(s)	358
BbvI	GCAGC	1 cut(s)	49
BciT130I	CCWGG	2 cut(s)	49, 249
BisI	GCNGC	1 cut(s)	63
BlpI	GCTNAGC	1 cut(s)	357
BlsI	GCNGC	1 cut(s)	64
Bme1390I	CCNGG	2 cut(s)	49, 249
BmrFI	CCNGG	2 cut(s)	49, 249
BmsI	GCATC	1 cut(s)	268
BpiI	GAAGAC	1 cut(s)	136
Bpu1102I	GCTNAGC	1 cut(s)	357
Bpu14I	TTCGAA	1 cut(s)	161
BpuEI	CTTGAG	1 cut(s)	28
BsaJI	CCNNGG	2 cut(s)	47, 247
Bsc4I	CCNNNNNNNGG	1 cut(s)	248
Bse1I	ACTGG	1 cut(s)	306
Bse3DI	GCAATG	1 cut(s)	157
BseBI	CCWGG	2 cut(s)	49, 249
BseDI	CCNNGG	2 cut(s)	47, 247
BseLI	CCNNNNNNNGG	1 cut(s)	248
BseMI	GCAATG	1 cut(s)	157
BseMII	CTCAG	1 cut(s)	371
BseNI	ACTGG	1 cut(s)	306
BseXI	GCAGC	1 cut(s)	49
BshFI	GGCC	1 cut(s)	5
BsiHKAI	GWGCWC	1 cut(s)	358
BslFI	GGGAC	1 cut(s)	292
BslI	CCNNNNNNNGG	1 cut(s)	248
BsmFI	GGGAC	1 cut(s)	292
BsmI	GAATGC	1 cut(s)	73
BsnI	GGCC	1 cut(s)	5
Bsp119I	TTCGAA	1 cut(s)	161
Bsp1286I	GDGCHC	1 cut(s)	358
Bsp143I	GATC	1 cut(s)	169
Bsp1720I	GCTNAGC	1 cut(s)	357
BspANI	GGCC	1 cut(s)	5
BspCNI	CTCAG	1 cut(s)	370
BspT104I	TTCGAA	1 cut(s)	161
BsrDI	GCAATG	1 cut(s)	157
BsrI	ACTGG	1 cut(s)	306
BssECI	CCNNGG	2 cut(s)	47, 247
BssMI	GATC	1 cut(s)	169
Bst2UI	CCWGG	2 cut(s)	49, 249
Bst4CI	ACNGT	2 cut(s)	16, 342
Bst6I	CTCTTC	1 cut(s)	108
BstBI	TTCGAA	1 cut(s)	161
BstDEI	CTNAG	1 cut(s)	357
BstEII	GGTNACC	1 cut(s)	346
BstKTI	GATC	1 cut(s)	172
BstMBI	GATC	1 cut(s)	169
BstNI	CCWGG	2 cut(s)	49, 249
BstNSI	RCATGY	2 cut(s)	83, 301
BstPI	GGTNACC	1 cut(s)	346
BstSCI	CCNGG	2 cut(s)	47, 247
BstV1I	GCAGC	1 cut(s)	49
BstV2I	GAAGAC	1 cut(s)	136
BsuRI	GGCC	1 cut(s)	5
BtsIMutI	CAGTG	1 cut(s)	21
CviAII	CATG	2 cut(s)	80, 298
CviJI	RGCY	4 cut(s)	5, 90, 272, 361
CviKI_1	RGCY	4 cut(s)	5, 90, 272, 361
DdeI	CTNAG	1 cut(s)	357
DpnI	GATC	1 cut(s)	171
DpnII	GATC	1 cut(s)	169
DraI	TTTAAA	1 cut(s)	100
DrdI	GACNNNNNNGTC	1 cut(s)	25
DseDI	GACNNNNNNGTC	1 cut(s)	25
Eam1104I	CTCTTC	1 cut(s)	108
EarI	CTCTTC	1 cut(s)	108
Eco57I	CTGAAG	1 cut(s)	130
Eco91I	GGTNACC	1 cut(s)	346
EcoO65I	GGTNACC	1 cut(s)	346
EcoRII	CCWGG	2 cut(s)	47, 247
FaeI	CATG	2 cut(s)	83, 301
FaiI	YATR	6 cut(s)	81, 168, 211, 299, 321, 338
FaqI	GGGAC	1 cut(s)	292
FatI	CATG	2 cut(s)	79, 297
Fnu4HI	GCNGC	1 cut(s)	63
Fsp4HI	GCNGC	1 cut(s)	63
GluI	GCNGC	1 cut(s)	63
HaeIII	GGCC	1 cut(s)	5
Hin1II	CATG	2 cut(s)	83, 301
HindIII	AAGCTT	1 cut(s)	88
HinfI	GANTC	1 cut(s)	238
Hpy166II	GTNNAC	1 cut(s)	38
Hpy188III	TCNNGA	2 cut(s)	263, 293
Hpy8I	GTNNAC	1 cut(s)	38
HpyAV	CCTTC	1 cut(s)	208
HpyCH4III	ACNGT	2 cut(s)	16, 342
HpyCH4IV	ACGT	1 cut(s)	323
HpyCH4V	TGCA	3 cut(s)	73, 301, 336
HpyF3I	CTNAG	1 cut(s)	357
HpySE526I	ACGT	1 cut(s)	323
Hsp92II	CATG	2 cut(s)	83, 301
Kzo9I	GATC	1 cut(s)	169
Lsp1109I	GCAGC	1 cut(s)	49
LweI	GCATC	1 cut(s)	268
MaeII	ACGT	1 cut(s)	323
MaeIII	GTNAC	3 cut(s)	16, 293, 346
MalI	GATC	1 cut(s)	171
MboI	GATC	1 cut(s)	169
MboII	GAAGA	2 cut(s)	125, 136
MhlI	GDGCHC	1 cut(s)	358
MluCI	AATT	1 cut(s)	313
MmeI	TCCRAC	1 cut(s)	351
MnlI	CCTC	3 cut(s)	15, 109, 188
MroXI	GAANNNNTTC	1 cut(s)	242
MseI	TTAA	2 cut(s)	99, 373
MslI	CAYNNNNRTG	2 cut(s)	78, 264
MspR9I	CCNGG	2 cut(s)	49, 249
Mva1269I	GAATGC	1 cut(s)	73
MvaI	CCWGG	2 cut(s)	49, 249
NdeII	GATC	1 cut(s)	169
NlaIII	CATG	2 cut(s)	83, 301
NmuCI	GTSAC	2 cut(s)	16, 293
NspI	RCATGY	2 cut(s)	83, 301
NspV	TTCGAA	1 cut(s)	161
PctI	GAATGC	1 cut(s)	73
PdmI	GAANNNNTTC	1 cut(s)	242
PfeI	GAWTC	1 cut(s)	238
PkrI	GCNGC	1 cut(s)	64
Psp6I	CCWGG	2 cut(s)	47, 247
PspEI	GGTNACC	1 cut(s)	346
PspGI	CCWGG	2 cut(s)	47, 247
RseI	CAYNNNNRTG	2 cut(s)	78, 264
SaqAI	TTAA	2 cut(s)	99, 373
SatI	GCNGC	1 cut(s)	63
Sau3AI	GATC	1 cut(s)	169
ScrFI	CCNGG	2 cut(s)	49, 249
SduI	GDGCHC	1 cut(s)	358
SetI	ASST	6 cut(s)	53, 92, 286, 326, 353, 363
SfaNI	GCATC	1 cut(s)	268
SfuI	TTCGAA	1 cut(s)	161
SmiMI	CAYNNNNRTG	2 cut(s)	78, 264
SmlI	CTYRAG	1 cut(s)	7
SmoI	CTYRAG	1 cut(s)	7
Sse9I	AATT	1 cut(s)	313
StyD4I	CCNGG	2 cut(s)	47, 247
TaaI	ACNGT	2 cut(s)	16, 342
TaiI	ACGT	1 cut(s)	326
TaqI	TCGA	2 cut(s)	127, 161
TasI	AATT	1 cut(s)	313
TfiI	GAWTC	1 cut(s)	238
Tru1I	TTAA	2 cut(s)	99, 373
Tru9I	TTAA	2 cut(s)	99, 373
TscAI	CASTG	1 cut(s)	21
TseFI	GTSAC	2 cut(s)	16, 293
TseI	GCWGC	1 cut(s)	62
Tsp45I	GTSAC	2 cut(s)	16, 293
TspDTI	ATGAA	2 cut(s)	191, 269
TspRI	CASTG	1 cut(s)	21
XapI	RAATTY	1 cut(s)	313
XceI	RCATGY	2 cut(s)	83, 301
XmnI	GAANNNNTTC	1 cut(s)	242

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.