AT5G58530

Glutaredoxin

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0003557
Physical Location & Seq
Forward (+)
23660083 .. 23661472
1390 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G58530.1

Sequence Viewer

Length: 822 bp
ATGTGGCGGCCGTGGCGTAAATCGTCGGTTAAGATTCACGACACATACTCTCCAACCACCGCTTCCTTCAAAGACATTCACCATCTCTGCTCCGACGACTCACCTTCCTTCCCTTCTTCTCCCTCTCCATCTCCAAAAACCGCTTCTAGAGTCTTCCACCGAGTCCGTGCAGCTAATTTGATCCTCAAATCGTGGCCAACTCGTCAATCTAATCACCTCCTCCGCGCAGATTCCGAACCTATCAATCTAAGCCGGAATCAAAATCCAGAATCAGATTCGAAACAATCGAAAACCAAAACCGAACCAGATGTACGGATTTCAATCCCAGGCGCAGAGAAAAGCATTGTCGTATACTTCACAAGCCTACGCGTGGTTCGTCCAACATTCGAAGCCTGCAAATCCGTTACATCGATCCTCCATAGCTTCCCGGTACGAATCGACGAACGAGATCTCTCAATGGACGCGTCATTCTCCACCGAGCTACAACGAATCTTCGGGAAGGATCAGAACCAGAACCAGAACCAGGCGAAGACGCCGAAGCTGCCGCGAGTCTTCATCGGTGGTCGGTACATAGGAGGAGCGGAGGAGGTGAAACAGCTACACGAGATCGGAGAGTTGAAGAAACTTGTGCAAGAGTTGCCGAAGATTGAACCAGGGGTATGTGAGATGTGTGGTGGTCATAGATTCGTGCCGTGTAAGGATTGTCATGGTAGCCATAAGGTGCATACGGAGAAGCTAGGGTTCAGAACTTGCTTAACCTGTAACGAGAATGGTCTCGTCAGGTGTTCTTCTTGTTCATTTCCACAATCTCCTCCACCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Glutaredoxin

Protein Analysis

273

Amino Acids

30.68

Weight (kDa)

9.26

Isoelectric Point (pI)

57.11

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glutaredoxin PF00462 116 - 191 4.4e-09 Glutaredoxin
GRXCR1-2_C PF23733 221 - 266 9e-19 GRXCR1/2, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 581
AccI GTMKAC 1 cut(s) 351
AccII CGCG 4 cut(s) 225, 369, 464, 547
AciI CCGC 6 cut(s) 7, 60, 141, 223, 545, 581
AclWI GGATC 3 cut(s) 175, 406, 510
AcoI YGGCCR 2 cut(s) 8, 194
AcyI GRCGYC 1 cut(s) 533
AfaI GTAC 3 cut(s) 312, 432, 569
AfiI CCNNNNNNNGG 2 cut(s) 370, 523
AflIII ACRYGT 2 cut(s) 367, 462
AgsI TTSAA 4 cut(s) 70, 321, 619, 650
AjnI CCWGG 3 cut(s) 325, 522, 652
AjuI GAANNNNNNNTTGG 4 cut(s) 46, 78, 127, 159
AluBI AGCT 6 cut(s) 173, 423, 481, 541, 598, 736
AluI AGCT 6 cut(s) 173, 423, 481, 541, 598, 736
Alw26I GTCTC 1 cut(s) 779
AlwI GGATC 3 cut(s) 175, 406, 510
AoxI GGCC 2 cut(s) 8, 194
ApeKI GCWGC 2 cut(s) 170, 541
AspLEI GCGC 2 cut(s) 227, 332
AsuC2I CCSGG 1 cut(s) 428
AsuHPI GGTGA 4 cut(s) 71, 93, 206, 601
AsuII TTCGAA 2 cut(s) 278, 387
BalI TGGCCA 1 cut(s) 196
BauI CACGAG 1 cut(s) 602
BbsI GAAGAC 3 cut(s) 145, 536, 544
BbvI GCAGC 2 cut(s) 182, 528
BccI CCATC 2 cut(s) 90, 136
BceAI ACGGC 1 cut(s) 676
BciT130I CCWGG 3 cut(s) 327, 524, 654
BcnI CCSGG 1 cut(s) 428
BcoDI GTCTC 1 cut(s) 779
BfaI CTAG 2 cut(s) 147, 737
BglII AGATCT 1 cut(s) 448
BisI GCNGC 4 cut(s) 8, 171, 542, 545
BlsI GCNGC 4 cut(s) 9, 172, 543, 546
Bme1390I CCNGG 4 cut(s) 327, 428, 524, 654
BmrFI CCNGG 4 cut(s) 327, 428, 524, 654
BpiI GAAGAC 3 cut(s) 145, 536, 544
Bpu14I TTCGAA 2 cut(s) 278, 387
BpuMI CCSGG 1 cut(s) 428
Bsa29I ATCGAT 1 cut(s) 410
BsaBI GATNNNNATC 1 cut(s) 320
BsaHI GRCGYC 1 cut(s) 533
BsaI GGTCTC 1 cut(s) 779
BsaJI CCNNGG 3 cut(s) 11, 325, 653
BsaXI ACNNNNNCTCC 2 cut(s) 34, 64
Bsc4I CCNNNNNNNGG 2 cut(s) 370, 523
Bse8I GATNNNNATC 1 cut(s) 320
BseBI CCWGG 3 cut(s) 327, 524, 654
BseCI ATCGAT 1 cut(s) 410
BseDI CCNNGG 3 cut(s) 11, 325, 653
BseJI GATNNNNATC 1 cut(s) 320
BseLI CCNNNNNNNGG 2 cut(s) 370, 523
BseRI GAGGAG 4 cut(s) 209, 591, 599, 801
BseX3I CGGCCG 1 cut(s) 8
BseXI GCAGC 2 cut(s) 182, 528
BsgI GTGCAG 1 cut(s) 189
Bsh1236I CGCG 4 cut(s) 225, 369, 464, 547
Bsh1285I CGRYCG 1 cut(s) 11
BshFI GGCC 2 cut(s) 10, 196
BshVI ATCGAT 1 cut(s) 410
BsiEI CGRYCG 1 cut(s) 11
BsiSI CCGG 2 cut(s) 253, 428
BslI CCNNNNNNNGG 2 cut(s) 370, 523
BsmAI GTCTC 1 cut(s) 779
BsnI GGCC 2 cut(s) 10, 196
Bso31I GGTCTC 1 cut(s) 779
Bsp119I TTCGAA 2 cut(s) 278, 387
Bsp143I GATC 5 cut(s) 180, 411, 448, 502, 606
BspACI CCGC 6 cut(s) 7, 60, 141, 223, 545, 581
BspANI GGCC 2 cut(s) 10, 196
BspDI ATCGAT 1 cut(s) 410
BspFNI CGCG 4 cut(s) 225, 369, 464, 547
BspPI GGATC 3 cut(s) 175, 406, 510
BspT104I TTCGAA 2 cut(s) 278, 387
BspTNI GGTCTC 1 cut(s) 779
BsrBI CCGCTC 1 cut(s) 581
BssECI CCNNGG 3 cut(s) 11, 325, 653
BssMI GATC 5 cut(s) 180, 411, 448, 502, 606
BssNAI GTATAC 1 cut(s) 352
BssNI GRCGYC 1 cut(s) 533
BssSI CACGAG 1 cut(s) 602
Bst1107I GTATAC 1 cut(s) 352
Bst2BI CACGAG 1 cut(s) 602
Bst2UI CCWGG 3 cut(s) 327, 524, 654
BstACI GRCGYC 1 cut(s) 533
BstAPI GCANNNNNTGC 1 cut(s) 637
BstBI TTCGAA 2 cut(s) 278, 387
BstC8I GCNNGC 1 cut(s) 394
BstDEI CTNAG 1 cut(s) 248
BstDSI CCRYGG 1 cut(s) 11
BstFNI CGCG 4 cut(s) 225, 369, 464, 547
BstHHI GCGC 2 cut(s) 227, 332
BstKTI GATC 5 cut(s) 183, 414, 451, 505, 609
BstMAI GTCTC 1 cut(s) 779
BstMBI GATC 5 cut(s) 180, 411, 448, 502, 606
BstMCI CGRYCG 1 cut(s) 11
BstMWI GCNNNNNNNGC 3 cut(s) 13, 541, 637
BstNI CCWGG 3 cut(s) 327, 524, 654
BstSCI CCNGG 4 cut(s) 325, 426, 522, 652
BstUI CGCG 4 cut(s) 225, 369, 464, 547
BstV1I GCAGC 2 cut(s) 182, 528
BstV2I GAAGAC 3 cut(s) 145, 536, 544
BstX2I RGATCY 1 cut(s) 448
BstYI RGATCY 1 cut(s) 448
BstZ17I GTATAC 1 cut(s) 352
BstZI CGGCCG 1 cut(s) 8
Bsu15I ATCGAT 1 cut(s) 410
BsuRI GGCC 2 cut(s) 10, 196
BsuTUI ATCGAT 1 cut(s) 410
BtgI CCRYGG 1 cut(s) 11
Cac8I GCNNGC 1 cut(s) 394
CfoI GCGC 2 cut(s) 227, 332
ClaI ATCGAT 1 cut(s) 410
CseI GACGC 3 cut(s) 453, 470, 541
Csp6I GTAC 3 cut(s) 311, 431, 568
CviAII CATG 1 cut(s) 707
CviQI GTAC 3 cut(s) 311, 431, 568
DdeI CTNAG 1 cut(s) 248
DpnI GATC 5 cut(s) 182, 413, 450, 504, 608
DpnII GATC 5 cut(s) 180, 411, 448, 502, 606
EaeI YGGCCR 2 cut(s) 8, 194
EagI CGGCCG 1 cut(s) 8
EclXI CGGCCG 1 cut(s) 8
Eco31I GGTCTC 1 cut(s) 779
Eco52I CGGCCG 1 cut(s) 8
EcoRII CCWGG 3 cut(s) 325, 522, 652
FaeI CATG 1 cut(s) 710
FaiI YATR 9 cut(s) 46, 352, 420, 572, 661, 681, 708, 717, 726
FatI CATG 1 cut(s) 706
FblI GTMKAC 1 cut(s) 351
Fnu4HI GCNGC 4 cut(s) 8, 171, 542, 545
Fsp4HI GCNGC 4 cut(s) 8, 171, 542, 545
FspBI CTAG 2 cut(s) 147, 737
GlaI GCGC 2 cut(s) 226, 331
GluI GCNGC 4 cut(s) 8, 171, 542, 545
HaeIII GGCC 2 cut(s) 10, 196
HapII CCGG 2 cut(s) 253, 428
HgaI GACGC 3 cut(s) 453, 470, 541
HhaI GCGC 2 cut(s) 227, 332
Hin1I GRCGYC 1 cut(s) 533
Hin1II CATG 1 cut(s) 710
Hin6I GCGC 2 cut(s) 225, 330
HinP1I GCGC 2 cut(s) 225, 330
HpaII CCGG 2 cut(s) 253, 428
HphI GGTGA 4 cut(s) 71, 93, 206, 601
Hpy166II GTNNAC 1 cut(s) 352
Hpy188I TCNGA 6 cut(s) 94, 235, 274, 507, 611, 746
Hpy188III TCNNGA 4 cut(s) 38, 147, 266, 496
Hpy8I GTNNAC 1 cut(s) 352
Hpy99I CGWCG 3 cut(s) 28, 98, 443
HpyAV CCTTC 5 cut(s) 76, 114, 118, 123, 493
HpyCH4V TGCA 4 cut(s) 170, 396, 631, 724
HpyF10VI GCNNNNNNNGC 3 cut(s) 13, 541, 637
HpyF3I CTNAG 1 cut(s) 248
Hsp92I GRCGYC 1 cut(s) 533
Hsp92II CATG 1 cut(s) 710
HspAI GCGC 2 cut(s) 225, 330
Kzo9I GATC 5 cut(s) 180, 411, 448, 502, 606
LmnI GCTCC 2 cut(s) 95, 578
Lsp1109I GCAGC 2 cut(s) 182, 528
MaeI CTAG 2 cut(s) 147, 737
MaeIII GTNAC 2 cut(s) 403, 761
MalI GATC 5 cut(s) 182, 413, 450, 504, 608
MbiI CCGCTC 1 cut(s) 581
MboI GATC 5 cut(s) 180, 411, 448, 502, 606
MboII GAAGA 8 cut(s) 108, 145, 484, 541, 544, 631, 655, 780
MflI RGATCY 1 cut(s) 448
MlsI TGGCCA 1 cut(s) 196
MluCI AATT 1 cut(s) 175
MluI ACGCGT 2 cut(s) 367, 462
MluNI TGGCCA 1 cut(s) 196
MlyI GAGTC 4 cut(s) 92, 159, 171, 558
MmeI TCCRAC 3 cut(s) 77, 117, 404
MnlI CCTC 9 cut(s) 133, 194, 227, 230, 425, 569, 577, 580, 822
Mox20I TGGCCA 1 cut(s) 196
MscI TGGCCA 1 cut(s) 196
MseI TTAA 2 cut(s) 30, 755
Msp20I TGGCCA 1 cut(s) 196
MspI CCGG 2 cut(s) 253, 428
MspR9I CCNGG 4 cut(s) 327, 428, 524, 654
MvaI CCWGG 3 cut(s) 327, 524, 654
MvnI CGCG 4 cut(s) 225, 369, 464, 547
MwoI GCNNNNNNNGC 3 cut(s) 13, 541, 637
NciI CCSGG 1 cut(s) 428
NdeII GATC 5 cut(s) 180, 411, 448, 502, 606
NlaIII CATG 1 cut(s) 710
NspV TTCGAA 2 cut(s) 278, 387
PcsI WCGNNNNNNNCGW 2 cut(s) 284, 373
PfeI GAWTC 8 cut(s) 34, 230, 256, 269, 275, 435, 489, 684
PkrI GCNGC 4 cut(s) 9, 172, 543, 546
PleI GAGTC 4 cut(s) 92, 158, 170, 557
PpsI GAGTC 4 cut(s) 92, 158, 170, 557
Psp6I CCWGG 3 cut(s) 325, 522, 652
PspGI CCWGG 3 cut(s) 325, 522, 652
PsrI GAACNNNNNNTAC 2 cut(s) 294, 326
PsuI RGATCY 1 cut(s) 448
RsaI GTAC 3 cut(s) 312, 432, 569
RsaNI GTAC 3 cut(s) 311, 431, 568
SaqAI TTAA 2 cut(s) 30, 755
SatI GCNGC 4 cut(s) 8, 171, 542, 545
Sau3AI GATC 5 cut(s) 180, 411, 448, 502, 606
SchI GAGTC 4 cut(s) 92, 159, 171, 558
ScrFI CCNGG 4 cut(s) 327, 428, 524, 654
SfuI TTCGAA 2 cut(s) 278, 387
Sse9I AATT 1 cut(s) 175
SsiI CCGC 6 cut(s) 7, 60, 141, 223, 545, 581
SspMI CTAG 2 cut(s) 147, 737
StyD4I CCNGG 4 cut(s) 325, 426, 522, 652
TaqI TCGA 5 cut(s) 278, 287, 387, 410, 438
TasI AATT 1 cut(s) 175
TauI GCSGC 2 cut(s) 10, 547
TfiI GAWTC 8 cut(s) 34, 230, 256, 269, 275, 435, 489, 684
Tru1I TTAA 2 cut(s) 30, 755
Tru9I TTAA 2 cut(s) 30, 755
TseI GCWGC 2 cut(s) 170, 541
TspDTI ATGAA 2 cut(s) 544, 786
TspGWI ACGGA 4 cut(s) 155, 328, 391, 743
XbaI TCTAGA 1 cut(s) 146
XmiI GTMKAC 1 cut(s) 351
XspI CTAG 2 cut(s) 147, 737
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.