Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr03

Orthogroup ID

OG0003557

Physical Location & Seq

Genomic Coordinates Forward (+)

5013446 .. 5014216

Gene Structure 771 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD03G1062300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 771 bp

ATGTGGCGGCCGTGGAGCAAATCAACTGTTCAGATTCACGGCACGTCATCCCCATCCTCCCCCTTCTCCTTCTCCTCCTTCAAAGACATCCAAACCCTCTGCGCCGACGAAACCGACGACCACTCCCAGCAACCGACAACCGGCGCCGCCACCAAAAAGGCCTCCGCTATTTTCCATCGCGTCCGAGTCGCCAACTCGCTCCTCCGCGCCTGGTCAGCCGCCCAGCCCTTCACATCCTCACACCTCAAACCCCAACCCGACGATGAAATCTCCACAAAACAATCTGAGCCGTCGATCAGCTCCATCCCGGGCGCGGAGAAACGCATTGTCGTTTACTTCACAAGCCTACGTGTCGTTCGGTCGACGTTCGAGGACTGCAAGACCGTCCGATCGATTCTCCGAGGGTTTCGCGTATCATTGGACGAACGAGATCTGGCGATGGACCACCGGTTCTTAACCGAGCTGCAGCAGATTCTGGGTCAACAAACTAAGTTGACCTTGCCGAGGGTTTTCATTGGCGGGAGGTACGTAGGTGGCGCCGACGAGGTGAGAAATTTGCACGAGGCGGGCGAGCTCAAGAAGTTCGTGGAAGGATTGCCCGCACAGGAACCGGGCGTATGCGACACGTGCGGGGGGTACAGATTTATTCTGTGCGACGAGTGCAGCGGCAGCCACAAGTTGTACTCTGAGAAGAACGGCTTCAAGAGTTGTACGGCGTGCAATGAGAACGGTCTCATCAGGTGCTCTTCTTGTTCGTGTGCGCCGCTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glutaredoxin

Protein Analysis

257

Amino Acids

28.29

Weight (kDa)

8.28

Isoelectric Point (pI)

52.73

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glutaredoxin	PF00462	110 - 177	3.6e-11	Glutaredoxin
GRXCR1-2_C	PF23733	207 - 252	1.6e-19	GRXCR1/2, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003557)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G58530
fragaria_vesca	FvH4_3g39350 FvH4_7g24960
malus_domestica	MD01G1157000.v1.1 MD03G1062300.v1.1 MD07G1225800.v1.1 MD11G1065900.v1.1
prunus_persica	Prupe.2G254600_v2.0.a1 Prupe.6G052300_v2.0.a1
pyrus_communis	pycom03g04980 pycom06g13500
rosa_chinensis	RchiOBHm_Chr1g0370851 RchiOBHm_Chr1g0370861 RchiOBHm_Chr5g0070781
rosa_laevigata	RLG00000027004 RLG00000036158
rosa_multiflora	Rmu_sc0002944.1_g000025 Rmu_sc0009474.1_g000015 Rmu_sc0009474.1_g000016
rosa_roxburghii	Rroxscaffold_1G00010370 Rroxscaffold_4G00286180 Rroxscaffold_4G00286190
rosa_rugosa	Rorug01G0360000 Rorug05G0408500
rosa_samantha	Rh1AG369600 Rh1BG333100 Rh1CG346600 Rh1DG364300 Rh5AG463900 Rh5BG481700 Rh5CG506200 Rh5DG494600
rosa_wichuraiana	Rw1G032530 Rw1G032540 Rw5G043180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	143, 536
AccBSI	CCGCTC	1 cut(s)	766
AccI	GTMKAC	1 cut(s)	362
AccII	CGCG	4 cut(s)	180, 207, 314, 411
AcoI	YGGCCR	1 cut(s)	8
AcsI	RAATTY	1 cut(s)	553
AcvI	CACGTG	1 cut(s)	627
AcyI	GRCGYC	2 cut(s)	144, 537
AfaI	GTAC	4 cut(s)	527, 638, 683, 712
AfiI	CCNNNNNNNGG	3 cut(s)	140, 313, 504
AflIII	ACRYGT	2 cut(s)	349, 624
AgeI	ACCGGT	1 cut(s)	447
AgsI	TTSAA	2 cut(s)	82, 703
AjiI	CACGTC	1 cut(s)	45
AjnI	CCWGG	1 cut(s)	209
AloI	GAACNNNNNNTCC	2 cut(s)	434, 466
AluBI	AGCT	3 cut(s)	300, 463, 574
AluI	AGCT	3 cut(s)	300, 463, 574
Alw21I	GWGCWC	2 cut(s)	576, 746
Alw26I	GTCTC	1 cut(s)	737
AlwNI	CAGNNNCTG	1 cut(s)	475
Ama87I	CYCGRG	1 cut(s)	307
AoxI	GGCC	2 cut(s)	8, 159
ApeKI	GCWGC	4 cut(s)	463, 466, 663, 669
ApoI	RAATTY	1 cut(s)	553
AsiGI	ACCGGT	1 cut(s)	447
Asp700I	GAANNNNTTC	1 cut(s)	698
AspLEI	GCGC	6 cut(s)	104, 146, 209, 314, 539, 763
AspS9I	GGNCC	1 cut(s)	442
AsuC2I	CCSGG	3 cut(s)	308, 309, 612
AsuHPI	GGTGA	1 cut(s)	559
AvaI	CYCGRG	1 cut(s)	307
AvaII	GGWCC	1 cut(s)	442
BaeI	ACNNNNGTAYC	2 cut(s)	517, 550
BanI	GGYRCC	2 cut(s)	143, 536
BanII	GRGCYC	1 cut(s)	576
BauI	CACGAG	1 cut(s)	560
BbrPI	CACGTG	1 cut(s)	627
Bbv12I	GWGCWC	2 cut(s)	576, 746
BbvI	GCAGC	4 cut(s)	450, 478, 675, 681
BccI	CCATC	4 cut(s)	61, 183, 311, 433
BceAI	ACGGC	4 cut(s)	55, 274, 712, 729
BciT130I	CCWGG	1 cut(s)	211
BcnI	CCSGG	3 cut(s)	308, 309, 612
BcoDI	GTCTC	1 cut(s)	737
BfmI	CTRYAG	1 cut(s)	464
BfoI	RGCGCY	2 cut(s)	147, 540
BglII	AGATCT	1 cut(s)	430
BisI	GCNGC	9 cut(s)	8, 147, 219, 464, 467, 664, 667, 670, 764
BlsI	GCNGC	9 cut(s)	9, 148, 220, 465, 468, 665, 668, 671, 765
Bme1390I	CCNGG	4 cut(s)	211, 308, 309, 612
Bme18I	GGWCC	1 cut(s)	442
BmeT110I	CYCGRG	1 cut(s)	307
BmgBI	CACGTC	1 cut(s)	45
BmgT120I	GGNCC	1 cut(s)	442
BmiI	GGNNCC	3 cut(s)	145, 538, 609
BmrFI	CCNGG	4 cut(s)	211, 308, 309, 612
BpuEI	CTTGAG	1 cut(s)	560
BpuMI	CCSGG	3 cut(s)	308, 309, 612
Bsa29I	ATCGAT	1 cut(s)	392
BsaAI	YACGTR	3 cut(s)	350, 529, 627
BsaHI	GRCGYC	2 cut(s)	144, 537
BsaI	GGTCTC	1 cut(s)	737
BsaJI	CCNNGG	4 cut(s)	11, 307, 400, 503
BsaWI	WCCGGW	1 cut(s)	447
BsaXI	ACNNNNNCTCC	2 cut(s)	107, 137
Bsc4I	CCNNNNNNNGG	3 cut(s)	140, 313, 504
Bse118I	RCCGGY	2 cut(s)	140, 447
Bse3DI	GCAATG	1 cut(s)	727
BseBI	CCWGG	1 cut(s)	211
BseCI	ATCGAT	1 cut(s)	392
BseDI	CCNNGG	4 cut(s)	11, 307, 400, 503
BseGI	GGATG	5 cut(s)	47, 53, 87, 233, 303
BseLI	CCNNNNNNNGG	3 cut(s)	140, 313, 504
BseMI	GCAATG	1 cut(s)	727
BseMII	CTCAG	2 cut(s)	276, 678
BseRI	GAGGAG	2 cut(s)	64, 191
BseX3I	CGGCCG	1 cut(s)	8
BseXI	GCAGC	4 cut(s)	450, 478, 675, 681
BseYI	CCCAGC	2 cut(s)	126, 222
BsgI	GTGCAG	1 cut(s)	682
Bsh1236I	CGCG	4 cut(s)	180, 207, 314, 411
Bsh1285I	CGRYCG	3 cut(s)	11, 362, 392
BshFI	GGCC	2 cut(s)	10, 161
BshNI	GGYRCC	2 cut(s)	143, 536
BshTI	ACCGGT	1 cut(s)	447
BshVI	ATCGAT	1 cut(s)	392
BsiEI	CGRYCG	3 cut(s)	11, 362, 392
BsiHKAI	GWGCWC	2 cut(s)	576, 746
BsiHKCI	CYCGRG	1 cut(s)	307
BsiSI	CCGG	4 cut(s)	141, 308, 448, 611
BslI	CCNNNNNNNGG	3 cut(s)	140, 313, 504
BsmAI	GTCTC	1 cut(s)	737
BsnI	GGCC	2 cut(s)	10, 161
Bso31I	GGTCTC	1 cut(s)	737
BsoBI	CYCGRG	1 cut(s)	307
Bsp1286I	GDGCHC	2 cut(s)	576, 746
Bsp143I	GATC	3 cut(s)	294, 389, 430
BspANI	GGCC	2 cut(s)	10, 161
BspCNI	CTCAG	2 cut(s)	277, 679
BspDI	ATCGAT	1 cut(s)	392
BspFNI	CGCG	4 cut(s)	180, 207, 314, 411
BspLI	GGNNCC	3 cut(s)	145, 538, 609
BspMAI	CTGCAG	1 cut(s)	468
BspQI	GCTCTTC	1 cut(s)	751
BspT107I	GGYRCC	2 cut(s)	143, 536
BspTNI	GGTCTC	1 cut(s)	737
BsrBI	CCGCTC	1 cut(s)	766
BsrDI	GCAATG	1 cut(s)	727
BsrFI	RCCGGY	2 cut(s)	140, 447
BssAI	RCCGGY	2 cut(s)	140, 447
BssECI	CCNNGG	4 cut(s)	11, 307, 400, 503
BssMI	GATC	3 cut(s)	294, 389, 430
BssNI	GRCGYC	2 cut(s)	144, 537
BssSI	CACGAG	1 cut(s)	560
Bst2BI	CACGAG	1 cut(s)	560
Bst2UI	CCWGG	1 cut(s)	211
Bst4CI	ACNGT	3 cut(s)	28, 385, 731
Bst6I	CTCTTC	1 cut(s)	751
BstACI	GRCGYC	2 cut(s)	144, 537
BstBAI	YACGTR	3 cut(s)	350, 529, 627
BstC8I	GCNNGC	4 cut(s)	568, 572, 600, 718
BstDEI	CTNAG	3 cut(s)	285, 489, 687
BstDSI	CCRYGG	1 cut(s)	11
BstENI	CCTNNNNNAGG	1 cut(s)	502
BstF5I	GGATG	5 cut(s)	47, 53, 87, 233, 303
BstFNI	CGCG	4 cut(s)	180, 207, 314, 411
BstH2I	RGCGCY	2 cut(s)	147, 540
BstHHI	GCGC	6 cut(s)	104, 146, 209, 314, 539, 763
BstKTI	GATC	3 cut(s)	297, 392, 433
BstMAI	GTCTC	1 cut(s)	737
BstMBI	GATC	3 cut(s)	294, 389, 430
BstMCI	CGRYCG	3 cut(s)	11, 362, 392
BstMWI	GCNNNNNNNGC	4 cut(s)	215, 627, 660, 669
BstNI	CCWGG	1 cut(s)	211
BstSCI	CCNGG	4 cut(s)	209, 306, 307, 610
BstSFI	CTRYAG	1 cut(s)	464
BstSNI	TACGTA	1 cut(s)	529
BstUI	CGCG	4 cut(s)	180, 207, 314, 411
BstV1I	GCAGC	4 cut(s)	450, 478, 675, 681
BstX2I	RGATCY	1 cut(s)	430
BstYI	RGATCY	1 cut(s)	430
BstZI	CGGCCG	1 cut(s)	8
Bsu15I	ATCGAT	1 cut(s)	392
BsuRI	GGCC	2 cut(s)	10, 161
BsuTUI	ATCGAT	1 cut(s)	392
BtgI	CCRYGG	1 cut(s)	11
BtgZI	GCGATG	2 cut(s)	161, 452
BtrI	CACGTC	1 cut(s)	45
BtsCI	GGATG	5 cut(s)	47, 53, 87, 233, 303
Cac8I	GCNNGC	4 cut(s)	568, 572, 600, 718
CaiI	CAGNNNCTG	1 cut(s)	475
CfoI	GCGC	6 cut(s)	104, 146, 209, 314, 539, 763
Cfr10I	RCCGGY	2 cut(s)	140, 447
Cfr13I	GGNCC	1 cut(s)	442
Cfr9I	CCCGGG	1 cut(s)	307
ClaI	ATCGAT	1 cut(s)	392
CseI	GACGC	1 cut(s)	169
Csp6I	GTAC	4 cut(s)	526, 637, 682, 711
CspAI	ACCGGT	1 cut(s)	447
CviQI	GTAC	4 cut(s)	526, 637, 682, 711
DdeI	CTNAG	3 cut(s)	285, 489, 687
DinI	GGCGCC	2 cut(s)	145, 538
DpnI	GATC	3 cut(s)	296, 391, 432
DpnII	GATC	3 cut(s)	294, 389, 430
EaeI	YGGCCR	1 cut(s)	8
EagI	CGGCCG	1 cut(s)	8
Eam1104I	CTCTTC	1 cut(s)	751
EarI	CTCTTC	1 cut(s)	751
Ecl136II	GAGCTC	1 cut(s)	574
EclXI	CGGCCG	1 cut(s)	8
Eco105I	TACGTA	1 cut(s)	529
Eco147I	AGGCCT	1 cut(s)	161
Eco24I	GRGCYC	1 cut(s)	576
Eco31I	GGTCTC	1 cut(s)	737
Eco47I	GGWCC	1 cut(s)	442
Eco52I	CGGCCG	1 cut(s)	8
Eco53kI	GAGCTC	1 cut(s)	574
Eco72I	CACGTG	1 cut(s)	627
Eco88I	CYCGRG	1 cut(s)	307
EcoICRI	GAGCTC	1 cut(s)	574
EcoNI	CCTNNNNNAGG	1 cut(s)	502
EcoRII	CCWGG	1 cut(s)	209
EcoT38I	GRGCYC	1 cut(s)	576
EgeI	GGCGCC	2 cut(s)	145, 538
EheI	GGCGCC	2 cut(s)	145, 538
FaiI	YATR	1 cut(s)	619
FalI	AAGNNNNNCTT	4 cut(s)	482, 514, 683, 715
FauI	CCCGC	4 cut(s)	512, 559, 607, 623
FblI	GTMKAC	1 cut(s)	362
Fnu4HI	GCNGC	9 cut(s)	8, 147, 219, 464, 467, 664, 667, 670, 764
FokI	GGATG	5 cut(s)	34, 40, 74, 220, 290
FriOI	GRGCYC	1 cut(s)	576
Fsp4HI	GCNGC	9 cut(s)	8, 147, 219, 464, 467, 664, 667, 670, 764
GlaI	GCGC	6 cut(s)	103, 145, 208, 313, 538, 762
GluI	GCNGC	9 cut(s)	8, 147, 219, 464, 467, 664, 667, 670, 764
GsaI	CCCAGC	2 cut(s)	130, 226
HaeII	RGCGCY	2 cut(s)	147, 540
HaeIII	GGCC	2 cut(s)	10, 161
HapII	CCGG	4 cut(s)	141, 308, 448, 611
HgaI	GACGC	1 cut(s)	169
HhaI	GCGC	6 cut(s)	104, 146, 209, 314, 539, 763
Hin1I	GRCGYC	2 cut(s)	144, 537
Hin6I	GCGC	6 cut(s)	102, 144, 207, 312, 537, 761
HinP1I	GCGC	6 cut(s)	102, 144, 207, 312, 537, 761
HincII	GTYRAC	3 cut(s)	363, 482, 495
HindII	GTYRAC	3 cut(s)	363, 482, 495
HinfI	GANTC	4 cut(s)	34, 186, 394, 472
HpaII	CCGG	4 cut(s)	141, 308, 448, 611
HphI	GGTGA	1 cut(s)	559
Hpy166II	GTNNAC	4 cut(s)	334, 363, 482, 495
Hpy188I	TCNGA	6 cut(s)	33, 185, 286, 389, 401, 688
Hpy188III	TCNNGA	2 cut(s)	577, 703
Hpy8I	GTNNAC	4 cut(s)	334, 363, 482, 495
Hpy99I	CGWCG	7 cut(s)	110, 119, 263, 295, 367, 545, 659
HpyAV	CCTTC	5 cut(s)	73, 79, 88, 238, 584
HpyCH4III	ACNGT	3 cut(s)	28, 385, 731
HpyCH4IV	ACGT	5 cut(s)	44, 349, 365, 528, 626
HpyCH4V	TGCA	5 cut(s)	378, 466, 559, 663, 720
HpyF10VI	GCNNNNNNNGC	4 cut(s)	215, 627, 660, 669
HpyF3I	CTNAG	3 cut(s)	285, 489, 687
HpySE526I	ACGT	5 cut(s)	44, 349, 365, 528, 626
Hsp92I	GRCGYC	2 cut(s)	144, 537
HspAI	GCGC	6 cut(s)	102, 144, 207, 312, 537, 761
KasI	GGCGCC	2 cut(s)	143, 536
Kzo9I	GATC	3 cut(s)	294, 389, 430
LguI	GCTCTTC	1 cut(s)	751
LmnI	GCTCC	3 cut(s)	15, 204, 305
Lsp1109I	GCAGC	4 cut(s)	450, 478, 675, 681
MaeII	ACGT	5 cut(s)	44, 349, 365, 528, 626
MalI	GATC	3 cut(s)	296, 391, 432
MbiI	CCGCTC	1 cut(s)	766
MboI	GATC	3 cut(s)	294, 389, 430
MboII	GAAGA	2 cut(s)	703, 738
MflI	RGATCY	1 cut(s)	430
MhlI	GDGCHC	2 cut(s)	576, 746
MluCI	AATT	1 cut(s)	553
Mly113I	GGCGCC	2 cut(s)	144, 537
MlyI	GAGTC	1 cut(s)	195
MroXI	GAANNNNTTC	1 cut(s)	698
MseI	TTAA	1 cut(s)	455
MspA1I	CMGCKG	1 cut(s)	666
MspI	CCGG	4 cut(s)	141, 308, 448, 611
MspR9I	CCNGG	4 cut(s)	211, 308, 309, 612
MvaI	CCWGG	1 cut(s)	211
MvnI	CGCG	4 cut(s)	180, 207, 314, 411
MwoI	GCNNNNNNNGC	4 cut(s)	215, 627, 660, 669
NarI	GGCGCC	2 cut(s)	144, 537
NciI	CCSGG	3 cut(s)	308, 309, 612
NdeII	GATC	3 cut(s)	294, 389, 430
NlaIV	GGNNCC	3 cut(s)	145, 538, 609
NmeAIII	GCCGAG	1 cut(s)	528
PceI	AGGCCT	1 cut(s)	161
PciSI	GCTCTTC	1 cut(s)	751
PcsI	WCGNNNNNNNCGW	2 cut(s)	114, 567
PdmI	GAANNNNTTC	1 cut(s)	698
PfeI	GAWTC	3 cut(s)	34, 394, 472
PinAI	ACCGGT	1 cut(s)	447
PkrI	GCNGC	9 cut(s)	9, 148, 220, 465, 468, 665, 668, 671, 765
Ple19I	CGATCG	1 cut(s)	392
PleI	GAGTC	1 cut(s)	194
PluTI	GGCGCC	2 cut(s)	147, 540
PmaCI	CACGTG	1 cut(s)	627
PmlI	CACGTG	1 cut(s)	627
PpsI	GAGTC	1 cut(s)	194
Ppu21I	YACGTR	3 cut(s)	350, 529, 627
Psp124BI	GAGCTC	1 cut(s)	576
Psp6I	CCWGG	1 cut(s)	209
PspCI	CACGTG	1 cut(s)	627
PspFI	CCCAGC	2 cut(s)	126, 222
PspGI	CCWGG	1 cut(s)	209
PspN4I	GGNNCC	3 cut(s)	145, 538, 609
PspPI	GGNCC	1 cut(s)	442
PstI	CTGCAG	1 cut(s)	468
PstNI	CAGNNNCTG	1 cut(s)	475
PsuI	RGATCY	1 cut(s)	430
PvuI	CGATCG	1 cut(s)	392
RsaI	GTAC	4 cut(s)	527, 638, 683, 712
RsaNI	GTAC	4 cut(s)	526, 637, 682, 711
SacI	GAGCTC	1 cut(s)	576
SalI	GTCGAC	1 cut(s)	361
SapI	GCTCTTC	1 cut(s)	751
SaqAI	TTAA	1 cut(s)	455
SatI	GCNGC	9 cut(s)	8, 147, 219, 464, 467, 664, 667, 670, 764
Sau3AI	GATC	3 cut(s)	294, 389, 430
Sau96I	GGNCC	1 cut(s)	442
SchI	GAGTC	1 cut(s)	195
ScrFI	CCNGG	4 cut(s)	211, 308, 309, 612
SduI	GDGCHC	2 cut(s)	576, 746
SfcI	CTRYAG	1 cut(s)	464
SfoI	GGCGCC	2 cut(s)	145, 538
SinI	GGWCC	1 cut(s)	442
SmaI	CCCGGG	1 cut(s)	309
SmlI	CTYRAG	1 cut(s)	575
SmoI	CTYRAG	1 cut(s)	575
SnaBI	TACGTA	1 cut(s)	529
Sse9I	AATT	1 cut(s)	553
SseBI	AGGCCT	1 cut(s)	161
SspDI	GGCGCC	2 cut(s)	143, 536
SstI	GAGCTC	1 cut(s)	576
StuI	AGGCCT	1 cut(s)	161
StyD4I	CCNGG	4 cut(s)	209, 306, 307, 610
TaaI	ACNGT	3 cut(s)	28, 385, 731
TaiI	ACGT	5 cut(s)	47, 352, 368, 531, 629
TaqI	TCGA	4 cut(s)	293, 362, 369, 392
TaqII	GACCGA	1 cut(s)	348
TasI	AATT	1 cut(s)	553
TatI	WGTACW	1 cut(s)	681
TauI	GCSGC	5 cut(s)	10, 149, 221, 669, 766
TfiI	GAWTC	3 cut(s)	34, 394, 472
Tru1I	TTAA	1 cut(s)	455
Tru9I	TTAA	1 cut(s)	455
TseI	GCWGC	4 cut(s)	463, 466, 663, 669
TspDTI	ATGAA	2 cut(s)	279, 502
TspMI	CCCGGG	1 cut(s)	307
VpaK11BI	GGWCC	1 cut(s)	442
XagI	CCTNNNNNAGG	1 cut(s)	502
XapI	RAATTY	1 cut(s)	553
XmaI	CCCGGG	1 cut(s)	307
XmiI	GTMKAC	1 cut(s)	362
XmnI	GAANNNNTTC	1 cut(s)	698

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.