Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0003557

Physical Location & Seq

Genomic Coordinates Reverse (-)

19157970 .. 19159072

Gene Structure 1103 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g24960.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 792 bp

ATGACTTACATGGTAACTGAAAATTGCGAACATATATTGAAATTTTTGAGCAACTTAGGTTCATTTCCCCTCTGCTCGATTTCCATGGCCATCTTCTCATCCTCTTGGCTGAAATTACCGAGCAATGTGAACAAACCCACACCACCACCTCGTTCGTATAGAAGCCTTTCTTGCTCATCCGTCAAAGACATCCTAGACCTCTGCAAATCTGAACCCGAAACAGAGGTCCTCAGCCCCAGGAGTGCCTCCATTTTGAACCGTATCAAGATGTCCACCACGGTCCTCCTGCGTCTTTGGACCCGCAGTGTTGCGGGCCAAAGTGGCTGCAAAGTGCCACACGGAGACCATCGTGTAGTTATCTACTACACAAGTCTCCGCGTGGTGCGGAGGACATTTGAGGATTGCAGTGTGGTGAGATCAATCATCGGAGGGTTTCGGGTCCCCATTGACGAGAGAGATCTGTCAATGGACTTCAAGTATGTGCAGGAGCTGGAGAAGATCACTGGGAGCAAGGACTTGAACTTGCCAATGGTGTTCATCAACGGGGACTATGTTGGTGGCGTTGAGGAGGTGAGGCAGCTCCATGAGAGCGGCGAGTTGAAGACAATGCTCGAAAGGCTCCCGGTGGTGGAATCCAAAACTTGTGATGTGTGTGGAGGGCTTAGATTTATTCTCTGCCAGACTTGCGACGGAAGCCACAAACTGTATAGACAGAAAGAAGGGTTTTGCCCTTGTATGGACTGCAACATGAATGGCCTGATTACCTGCCCTTCATGTTCAACTGTGGGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glutaredoxin

Protein Analysis

264

Amino Acids

29.43

Weight (kDa)

8.14

Isoelectric Point (pI)

56.25

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glutaredoxin	PF00462	119 - 185	8.2e-08	Glutaredoxin
GRXCR1-2_C	PF23733	215 - 260	8.4e-17	GRXCR1/2, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003557)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G58530
fragaria_vesca	FvH4_3g39350 FvH4_7g24960
malus_domestica	MD01G1157000.v1.1 MD03G1062300.v1.1 MD07G1225800.v1.1 MD11G1065900.v1.1
prunus_persica	Prupe.2G254600_v2.0.a1 Prupe.6G052300_v2.0.a1
pyrus_communis	pycom03g04980 pycom06g13500
rosa_chinensis	RchiOBHm_Chr1g0370851 RchiOBHm_Chr1g0370861 RchiOBHm_Chr5g0070781
rosa_laevigata	RLG00000027004 RLG00000036158
rosa_multiflora	Rmu_sc0002944.1_g000025 Rmu_sc0009474.1_g000015 Rmu_sc0009474.1_g000016
rosa_roxburghii	Rroxscaffold_1G00010370 Rroxscaffold_4G00286180 Rroxscaffold_4G00286190
rosa_rugosa	Rorug01G0360000 Rorug05G0408500
rosa_samantha	Rh1AG369600 Rh1BG333100 Rh1CG346600 Rh1DG364300 Rh5AG463900 Rh5BG481700 Rh5CG506200 Rh5DG494600
rosa_wichuraiana	Rw1G032530 Rw1G032540 Rw5G043180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	773
AccBSI	CCGCTC	1 cut(s)	591
AccII	CGCG	1 cut(s)	378
AciI	CCGC	5 cut(s)	301, 311, 376, 385, 591
AcoI	YGGCCR	1 cut(s)	87
AcsI	RAATTY	1 cut(s)	41
AfiI	CCNNNNNNNGG	2 cut(s)	628, 736
AgsI	TTSAA	6 cut(s)	40, 256, 475, 520, 601, 780
AjnI	CCWGG	1 cut(s)	236
AluBI	AGCT	2 cut(s)	490, 580
AluI	AGCT	2 cut(s)	490, 580
Alw26I	GTCTC	2 cut(s)	336, 377
AlwNI	CAGNNNCTG	1 cut(s)	490
AoxI	GGCC	3 cut(s)	87, 313, 754
ApeKI	GCWGC	2 cut(s)	324, 577
ApoI	RAATTY	1 cut(s)	41
ArsI	GACNNNNNNTTYG	2 cut(s)	210, 242
Asp700I	GAANNNNTTC	1 cut(s)	166
AspS9I	GGNCC	5 cut(s)	226, 280, 297, 313, 439
AsuC2I	CCSGG	1 cut(s)	623
AsuHPI	GGTGA	2 cut(s)	424, 583
AvaII	GGWCC	4 cut(s)	226, 280, 297, 439
BalI	TGGCCA	1 cut(s)	89
BbsI	GAAGAC	1 cut(s)	608
BbvCI	CCTCAGC	1 cut(s)	230
BbvI	GCAGC	2 cut(s)	311, 589
BccI	CCATC	2 cut(s)	98, 354
BciT130I	CCWGG	1 cut(s)	238
BcnI	CCSGG	1 cut(s)	623
BcoDI	GTCTC	2 cut(s)	336, 377
BfaI	CTAG	1 cut(s)	194
BfuAI	ACCTGC	1 cut(s)	773
BglI	GCCNNNNNGGC	1 cut(s)	321
BglII	AGATCT	1 cut(s)	457
BisI	GCNGC	3 cut(s)	325, 578, 592
BlsI	GCNGC	3 cut(s)	326, 579, 593
Bme1390I	CCNGG	2 cut(s)	238, 623
Bme18I	GGWCC	4 cut(s)	226, 280, 297, 439
BmgT120I	GGNCC	5 cut(s)	226, 280, 297, 313, 439
BmiI	GGNNCC	4 cut(s)	299, 440, 441, 620
BmrFI	CCNGG	2 cut(s)	238, 623
BmrI	ACTGGG	1 cut(s)	513
BmuI	ACTGGG	1 cut(s)	513
BpiI	GAAGAC	1 cut(s)	608
BpmI	CTGGAG	1 cut(s)	512
Bpu10I	CCTNAGC	1 cut(s)	230
BpuMI	CCSGG	1 cut(s)	623
BsaI	GGTCTC	1 cut(s)	336
BsaJI	CCNNGG	3 cut(s)	84, 236, 276
Bsc4I	CCNNNNNNNGG	2 cut(s)	628, 736
Bse1I	ACTGG	1 cut(s)	508
Bse3DI	GCAATG	1 cut(s)	130
BseBI	CCWGG	1 cut(s)	238
BseDI	CCNNGG	3 cut(s)	84, 236, 276
BseGI	GGATG	3 cut(s)	98, 176, 189
BseLI	CCNNNNNNNGG	2 cut(s)	628, 736
BseMI	GCAATG	1 cut(s)	130
BseMII	CTCAG	1 cut(s)	244
BseNI	ACTGG	1 cut(s)	508
BseRI	GAGGAG	1 cut(s)	581
BseXI	GCAGC	2 cut(s)	311, 589
BsgI	GTGCAG	1 cut(s)	503
Bsh1236I	CGCG	1 cut(s)	378
BshFI	GGCC	3 cut(s)	89, 315, 756
BsiSI	CCGG	1 cut(s)	623
BslFI	GGGAC	2 cut(s)	425, 560
BslI	CCNNNNNNNGG	2 cut(s)	628, 736
BsmAI	GTCTC	2 cut(s)	336, 377
BsmFI	GGGAC	2 cut(s)	425, 560
BsnI	GGCC	3 cut(s)	89, 315, 756
Bso31I	GGTCTC	1 cut(s)	336
Bsp143I	GATC	3 cut(s)	416, 457, 498
Bsp19I	CCATGG	1 cut(s)	84
BspACI	CCGC	5 cut(s)	301, 311, 376, 385, 591
BspANI	GGCC	3 cut(s)	89, 315, 756
BspCNI	CTCAG	1 cut(s)	243
BspFNI	CGCG	1 cut(s)	378
BspLI	GGNNCC	4 cut(s)	299, 440, 441, 620
BspMI	ACCTGC	1 cut(s)	773
BspTNI	GGTCTC	1 cut(s)	336
BsrBI	CCGCTC	1 cut(s)	591
BsrDI	GCAATG	1 cut(s)	130
BsrI	ACTGG	1 cut(s)	508
BssECI	CCNNGG	3 cut(s)	84, 236, 276
BssMI	GATC	3 cut(s)	416, 457, 498
BssT1I	CCWWGG	1 cut(s)	84
Bst2UI	CCWGG	1 cut(s)	238
Bst4CI	ACNGT	4 cut(s)	260, 280, 705, 784
BstC8I	GCNNGC	1 cut(s)	313
BstDEI	CTNAG	3 cut(s)	55, 230, 662
BstDSI	CCRYGG	2 cut(s)	84, 276
BstF5I	GGATG	3 cut(s)	98, 176, 189
BstFNI	CGCG	1 cut(s)	378
BstKTI	GATC	3 cut(s)	419, 460, 501
BstMAI	GTCTC	2 cut(s)	336, 377
BstMBI	GATC	3 cut(s)	416, 457, 498
BstMWI	GCNNNNNNNGC	5 cut(s)	171, 321, 616, 684, 693
BstNI	CCWGG	1 cut(s)	238
BstSCI	CCNGG	2 cut(s)	236, 621
BstUI	CGCG	1 cut(s)	378
BstV1I	GCAGC	2 cut(s)	311, 589
BstV2I	GAAGAC	1 cut(s)	608
BstX2I	RGATCY	1 cut(s)	457
BstYI	RGATCY	1 cut(s)	457
BsuRI	GGCC	3 cut(s)	89, 315, 756
BtgI	CCRYGG	2 cut(s)	84, 276
BtsCI	GGATG	3 cut(s)	98, 176, 189
BtsI	GCAGTG	2 cut(s)	310, 412
BtsIMutI	CAGTG	3 cut(s)	310, 412, 501
BveI	ACCTGC	1 cut(s)	773
Cac8I	GCNNGC	1 cut(s)	313
CaiI	CAGNNNCTG	1 cut(s)	490
Cfr13I	GGNCC	5 cut(s)	226, 280, 297, 313, 439
CseI	GACGC	1 cut(s)	278
CviAII	CATG	5 cut(s)	10, 85, 584, 748, 774
DdeI	CTNAG	3 cut(s)	55, 230, 662
DpnI	GATC	3 cut(s)	418, 459, 500
DpnII	GATC	3 cut(s)	416, 457, 498
EaeI	YGGCCR	1 cut(s)	87
Eco130I	CCWWGG	1 cut(s)	84
Eco31I	GGTCTC	1 cut(s)	336
Eco47I	GGWCC	4 cut(s)	226, 280, 297, 439
EcoO109I	RGGNCCY	2 cut(s)	226, 439
EcoRII	CCWGG	1 cut(s)	236
EcoT14I	CCWWGG	1 cut(s)	84
ErhI	CCWWGG	1 cut(s)	84
FaeI	CATG	5 cut(s)	13, 88, 587, 751, 777
FalI	AAGNNNNNCTT	2 cut(s)	154, 186
FaqI	GGGAC	2 cut(s)	425, 560
FatI	CATG	5 cut(s)	9, 84, 583, 747, 773
FauI	CCCGC	2 cut(s)	304, 308
Fnu4HI	GCNGC	3 cut(s)	325, 578, 592
FokI	GGATG	3 cut(s)	85, 163, 176
Fsp4HI	GCNGC	3 cut(s)	325, 578, 592
FspBI	CTAG	1 cut(s)	194
GluI	GCNGC	3 cut(s)	325, 578, 592
GsuI	CTGGAG	1 cut(s)	512
HaeIII	GGCC	3 cut(s)	89, 315, 756
HapII	CCGG	1 cut(s)	623
HgaI	GACGC	1 cut(s)	278
Hin1II	CATG	5 cut(s)	13, 88, 587, 751, 777
HinfI	GANTC	1 cut(s)	632
HpaII	CCGG	1 cut(s)	623
HphI	GGTGA	2 cut(s)	424, 583
Hpy166II	GTNNAC	2 cut(s)	130, 273
Hpy188I	TCNGA	2 cut(s)	211, 428
Hpy188III	TCNNGA	1 cut(s)	265
Hpy8I	GTNNAC	2 cut(s)	130, 273
Hpy99I	CGWCG	1 cut(s)	692
HpyAV	CCTTC	2 cut(s)	713, 780
HpyCH4III	ACNGT	4 cut(s)	260, 280, 705, 784
HpyCH4V	TGCA	5 cut(s)	204, 327, 405, 484, 744
HpyF10VI	GCNNNNNNNGC	5 cut(s)	171, 321, 616, 684, 693
HpyF3I	CTNAG	3 cut(s)	55, 230, 662
Hsp92II	CATG	5 cut(s)	13, 88, 587, 751, 777
KflI	GGGWCCC	1 cut(s)	439
Kzo9I	GATC	3 cut(s)	416, 457, 498
LmnI	GCTCC	4 cut(s)	487, 507, 585, 624
Lsp1109I	GCAGC	2 cut(s)	311, 589
MaeI	CTAG	1 cut(s)	194
MaeIII	GTNAC	1 cut(s)	13
MalI	GATC	3 cut(s)	418, 459, 500
MbiI	CCGCTC	1 cut(s)	591
MboI	GATC	3 cut(s)	416, 457, 498
MboII	GAAGA	3 cut(s)	85, 508, 613
MflI	RGATCY	1 cut(s)	457
MlsI	TGGCCA	1 cut(s)	89
MluCI	AATT	3 cut(s)	22, 41, 113
MluNI	TGGCCA	1 cut(s)	89
Mox20I	TGGCCA	1 cut(s)	89
MroXI	GAANNNNTTC	1 cut(s)	166
MscI	TGGCCA	1 cut(s)	89
Msp20I	TGGCCA	1 cut(s)	89
MspI	CCGG	1 cut(s)	623
MspR9I	CCNGG	2 cut(s)	238, 623
MvaI	CCWGG	1 cut(s)	238
MvnI	CGCG	1 cut(s)	378
MwoI	GCNNNNNNNGC	5 cut(s)	171, 321, 616, 684, 693
NciI	CCSGG	1 cut(s)	623
NcoI	CCATGG	1 cut(s)	84
NdeII	GATC	3 cut(s)	416, 457, 498
NlaIII	CATG	5 cut(s)	13, 88, 587, 751, 777
NlaIV	GGNNCC	4 cut(s)	299, 440, 441, 620
PdmI	GAANNNNTTC	1 cut(s)	166
PfeI	GAWTC	1 cut(s)	632
PkrI	GCNGC	3 cut(s)	326, 579, 593
PpuMI	RGGWCCY	2 cut(s)	226, 439
Psp5II	RGGWCCY	2 cut(s)	226, 439
Psp6I	CCWGG	1 cut(s)	236
PspGI	CCWGG	1 cut(s)	236
PspN4I	GGNNCC	4 cut(s)	299, 440, 441, 620
PspPI	GGNCC	5 cut(s)	226, 280, 297, 313, 439
PspPPI	RGGWCCY	2 cut(s)	226, 439
PstNI	CAGNNNCTG	1 cut(s)	490
PsuI	RGATCY	1 cut(s)	457
SatI	GCNGC	3 cut(s)	325, 578, 592
Sau3AI	GATC	3 cut(s)	416, 457, 498
Sau96I	GGNCC	5 cut(s)	226, 280, 297, 313, 439
ScrFI	CCNGG	2 cut(s)	238, 623
SetI	ASST	8 cut(s)	61, 151, 201, 228, 492, 573, 582, 767
SinI	GGWCC	4 cut(s)	226, 280, 297, 439
Sse9I	AATT	3 cut(s)	22, 41, 113
SsiI	CCGC	5 cut(s)	301, 311, 376, 385, 591
SspMI	CTAG	1 cut(s)	194
StyD4I	CCNGG	2 cut(s)	236, 621
StyI	CCWWGG	1 cut(s)	84
TaaI	ACNGT	4 cut(s)	260, 280, 705, 784
TaqI	TCGA	2 cut(s)	77, 612
TasI	AATT	3 cut(s)	22, 41, 113
TauI	GCSGC	1 cut(s)	594
TfiI	GAWTC	1 cut(s)	632
TscAI	CASTG	3 cut(s)	310, 412, 508
TseI	GCWGC	2 cut(s)	324, 577
TspDTI	ATGAA	4 cut(s)	51, 526, 762, 764
TspGWI	ACGGA	3 cut(s)	169, 354, 705
TspRI	CASTG	3 cut(s)	310, 412, 508
VpaK11BI	GGWCC	4 cut(s)	226, 280, 297, 439
XapI	RAATTY	1 cut(s)	41
XmnI	GAANNNNTTC	1 cut(s)	166
XspI	CTAG	1 cut(s)	194

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.