Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0003557

Physical Location & Seq

Genomic Coordinates Forward (+)

3681379 .. 3684309

Gene Structure 2931 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G052300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 744 bp

ATGTGGCGGCCGTGGGGCAAATCAACGGTTCAGATTCACAACACGTCATCTCCATCCTCACCCTTCTCCTTCTCCTCCTTCAAAGACATCCAGAATCTCTGCGCCGACGAAAACGAACACTCTCAACAACCCACAAACGCCGCCGCCAGAAGAACCTCTGCTATTTTTCACCGCGTCCGAGTCGCCAACTCACTCCTCCGCGCCTGGTCAACTCGCCCACCCACCCAACCCCAAGATGAAAATTCCGCAAAACAATCTGAGCCGTCCATCAGCTCCATCCCGGGTGCGGAGAAGCGCATTGTTGTTTACTTCACGAGCCTGCGCGTTGTGAGGCCGACTTTCGAGGACTGCAGGACCGTCCGATCAATTCTCCGAGGGTTTCGTGTCTCGTTGGACGAACGAGATCTGGCGATGGACCACGGGTTCTTAACCGAGCTGCAGCAGATTCTGGGTCAACACACTAAGTTGACTTTGCCGCGGGTTTTCATTGGTGGGAGGTACATAGGTGGGGCCGACGAGGTGAGAACGCTGCACGAAACCGGCGAGCTCAAGAAGTTCGTGGAAGGCTTGCCCGCACAGGAACCGGGCGTCTGTGACACGTGCGGAGGGTACAGATTTATTCTGTGTGTCGAGTGTAGTGGCAGCCACAAGTTGTACACTGAGAAGAATGGCTTCAAGAGTTGTACCTCCTGCAACGAGAACGGCCTCATCAGGTGCCCTTCTTGTTCATGCGCACCACTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glutaredoxin

Protein Analysis

248

Amino Acids

27.52

Weight (kDa)

8.65

Isoelectric Point (pI)

52.75

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003557)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G58530
fragaria_vesca	FvH4_3g39350 FvH4_7g24960
malus_domestica	MD01G1157000.v1.1 MD03G1062300.v1.1 MD07G1225800.v1.1 MD11G1065900.v1.1
prunus_persica	Prupe.2G254600_v2.0.a1 Prupe.6G052300_v2.0.a1
pyrus_communis	pycom03g04980 pycom06g13500
rosa_chinensis	RchiOBHm_Chr1g0370851 RchiOBHm_Chr1g0370861 RchiOBHm_Chr5g0070781
rosa_laevigata	RLG00000027004 RLG00000036158
rosa_multiflora	Rmu_sc0002944.1_g000025 Rmu_sc0009474.1_g000015 Rmu_sc0009474.1_g000016
rosa_roxburghii	Rroxscaffold_1G00010370 Rroxscaffold_4G00286180 Rroxscaffold_4G00286190
rosa_rugosa	Rorug01G0360000 Rorug05G0408500
rosa_samantha	Rh1AG369600 Rh1BG333100 Rh1CG346600 Rh1DG364300 Rh5AG463900 Rh5BG481700 Rh5CG506200 Rh5DG494600
rosa_wichuraiana	Rw1G032530 Rw1G032540 Rw5G043180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	733
AccB1I	GGYRCC	1 cut(s)	714
AccII	CGCG	4 cut(s)	174, 201, 324, 478
AcoI	YGGCCR	1 cut(s)	8
AcsI	RAATTY	1 cut(s)	241
AcvI	CACGTG	1 cut(s)	600
AcyI	GRCGYC	1 cut(s)	588
AfaI	GTAC	4 cut(s)	500, 611, 656, 685
AfiI	CCNNNNNNNGG	1 cut(s)	286
AflIII	ACRYGT	2 cut(s)	42, 597
AgsI	TTSAA	2 cut(s)	82, 676
AjiI	CACGTC	1 cut(s)	45
AjnI	CCWGG	1 cut(s)	203
AloI	GAACNNNNNNTCC	2 cut(s)	407, 439
AluBI	AGCT	3 cut(s)	273, 436, 547
AluI	AGCT	3 cut(s)	273, 436, 547
Alw21I	GWGCWC	1 cut(s)	549
Alw26I	GTCTC	1 cut(s)	391
AlwNI	CAGNNNCTG	1 cut(s)	448
Ama87I	CYCGRG	1 cut(s)	280
AoxI	GGCC	4 cut(s)	8, 332, 510, 703
ApeKI	GCWGC	4 cut(s)	436, 439, 529, 642
ApoI	RAATTY	1 cut(s)	241
Asp700I	GAANNNNTTC	1 cut(s)	671
AspLEI	GCGC	5 cut(s)	104, 203, 297, 324, 734
AspS9I	GGNCC	3 cut(s)	354, 415, 510
AsuC2I	CCSGG	3 cut(s)	281, 282, 585
AsuHPI	GGTGA	3 cut(s)	51, 161, 532
AvaI	CYCGRG	1 cut(s)	280
AvaII	GGWCC	2 cut(s)	354, 415
BaeGI	GKGCMC	1 cut(s)	719
BaeI	ACNNNNGTAYC	2 cut(s)	490, 523
BanI	GGYRCC	1 cut(s)	714
BanII	GRGCYC	1 cut(s)	549
BauI	CACGAG	1 cut(s)	313
BbrPI	CACGTG	1 cut(s)	600
Bbv12I	GWGCWC	1 cut(s)	549
BbvI	GCAGC	4 cut(s)	423, 451, 516, 654
BccI	CCATC	4 cut(s)	61, 275, 284, 406
BceAI	ACGGC	2 cut(s)	247, 718
BciT130I	CCWGG	1 cut(s)	205
BcnI	CCSGG	3 cut(s)	281, 282, 585
BcoDI	GTCTC	1 cut(s)	391
BfmI	CTRYAG	2 cut(s)	349, 437
BglII	AGATCT	1 cut(s)	403
BisI	GCNGC	8 cut(s)	8, 141, 144, 437, 440, 476, 530, 643
BlsI	GCNGC	8 cut(s)	9, 142, 145, 438, 441, 477, 531, 644
Bme1390I	CCNGG	4 cut(s)	205, 281, 282, 585
Bme18I	GGWCC	2 cut(s)	354, 415
BmeT110I	CYCGRG	1 cut(s)	280
BmgBI	CACGTC	1 cut(s)	45
BmgT120I	GGNCC	3 cut(s)	354, 415, 510
BmiI	GGNNCC	3 cut(s)	511, 582, 716
BmrFI	CCNGG	4 cut(s)	205, 281, 282, 585
BpuEI	CTTGAG	1 cut(s)	533
BpuMI	CCSGG	3 cut(s)	281, 282, 585
BsaAI	YACGTR	1 cut(s)	600
BsaHI	GRCGYC	1 cut(s)	588
BsaJI	CCNNGG	5 cut(s)	11, 280, 373, 418, 476
BsaXI	ACNNNNNCTCC	2 cut(s)	34, 64
Bsc4I	CCNNNNNNNGG	1 cut(s)	286
Bse118I	RCCGGY	1 cut(s)	539
BseBI	CCWGG	1 cut(s)	205
BseDI	CCNNGG	5 cut(s)	11, 280, 373, 418, 476
BseGI	GGATG	3 cut(s)	53, 87, 276
BseLI	CCNNNNNNNGG	1 cut(s)	286
BseMII	CTCAG	2 cut(s)	249, 651
BseRI	GAGGAG	2 cut(s)	64, 185
BseSI	GKGCMC	1 cut(s)	719
BseX3I	CGGCCG	1 cut(s)	8
BseXI	GCAGC	4 cut(s)	423, 451, 516, 654
BsgI	GTGCAG	1 cut(s)	515
Bsh1236I	CGCG	4 cut(s)	174, 201, 324, 478
Bsh1285I	CGRYCG	1 cut(s)	11
BshFI	GGCC	4 cut(s)	10, 334, 512, 705
BshNI	GGYRCC	1 cut(s)	714
BsiEI	CGRYCG	1 cut(s)	11
BsiHKAI	GWGCWC	1 cut(s)	549
BsiHKCI	CYCGRG	1 cut(s)	280
BsiSI	CCGG	3 cut(s)	281, 540, 584
BslI	CCNNNNNNNGG	1 cut(s)	286
BsmAI	GTCTC	1 cut(s)	391
BsnI	GGCC	4 cut(s)	10, 334, 512, 705
BsoBI	CYCGRG	1 cut(s)	280
Bsp1286I	GDGCHC	2 cut(s)	549, 719
Bsp1407I	TGTACA	1 cut(s)	654
Bsp143I	GATC	2 cut(s)	362, 403
BspANI	GGCC	4 cut(s)	10, 334, 512, 705
BspCNI	CTCAG	2 cut(s)	250, 652
BspFNI	CGCG	4 cut(s)	174, 201, 324, 478
BspLI	GGNNCC	3 cut(s)	511, 582, 716
BspMAI	CTGCAG	2 cut(s)	353, 441
BspT107I	GGYRCC	1 cut(s)	714
BsrFI	RCCGGY	1 cut(s)	539
BsrGI	TGTACA	1 cut(s)	654
BssAI	RCCGGY	1 cut(s)	539
BssECI	CCNNGG	5 cut(s)	11, 280, 373, 418, 476
BssMI	GATC	2 cut(s)	362, 403
BssNI	GRCGYC	1 cut(s)	588
BssSI	CACGAG	1 cut(s)	313
Bst2BI	CACGAG	1 cut(s)	313
Bst2UI	CCWGG	1 cut(s)	205
Bst4CI	ACNGT	2 cut(s)	28, 358
BstACI	GRCGYC	1 cut(s)	588
BstAUI	TGTACA	1 cut(s)	654
BstBAI	YACGTR	1 cut(s)	600
BstC8I	GCNNGC	4 cut(s)	320, 545, 569, 573
BstDEI	CTNAG	3 cut(s)	258, 462, 660
BstDSI	CCRYGG	3 cut(s)	11, 418, 476
BstF5I	GGATG	3 cut(s)	53, 87, 276
BstFNI	CGCG	4 cut(s)	174, 201, 324, 478
BstHHI	GCGC	5 cut(s)	104, 203, 297, 324, 734
BstKTI	GATC	2 cut(s)	365, 406
BstMAI	GTCTC	1 cut(s)	391
BstMBI	GATC	2 cut(s)	362, 403
BstMCI	CGRYCG	1 cut(s)	11
BstNI	CCWGG	1 cut(s)	205
BstSCI	CCNGG	4 cut(s)	203, 279, 280, 583
BstSFI	CTRYAG	2 cut(s)	349, 437
BstSLI	GKGCMC	1 cut(s)	719
BstUI	CGCG	4 cut(s)	174, 201, 324, 478
BstV1I	GCAGC	4 cut(s)	423, 451, 516, 654
BstX2I	RGATCY	1 cut(s)	403
BstYI	RGATCY	1 cut(s)	403
BstZI	CGGCCG	1 cut(s)	8
BsuRI	GGCC	4 cut(s)	10, 334, 512, 705
BtgI	CCRYGG	3 cut(s)	11, 418, 476
BtgZI	GCGATG	1 cut(s)	425
BtrI	CACGTC	1 cut(s)	45
BtsCI	GGATG	3 cut(s)	53, 87, 276
BtsIMutI	CAGTG	1 cut(s)	657
Cac8I	GCNNGC	4 cut(s)	320, 545, 569, 573
CaiI	CAGNNNCTG	1 cut(s)	448
CfoI	GCGC	5 cut(s)	104, 203, 297, 324, 734
Cfr10I	RCCGGY	1 cut(s)	539
Cfr13I	GGNCC	3 cut(s)	354, 415, 510
Cfr42I	CCGCGG	1 cut(s)	479
Cfr9I	CCCGGG	1 cut(s)	280
CseI	GACGC	2 cut(s)	163, 577
Csp6I	GTAC	4 cut(s)	499, 610, 655, 684
CviAII	CATG	1 cut(s)	729
CviQI	GTAC	4 cut(s)	499, 610, 655, 684
DdeI	CTNAG	3 cut(s)	258, 462, 660
DpnI	GATC	2 cut(s)	364, 405
DpnII	GATC	2 cut(s)	362, 403
EaeI	YGGCCR	1 cut(s)	8
EagI	CGGCCG	1 cut(s)	8
Ecl136II	GAGCTC	1 cut(s)	547
EclXI	CGGCCG	1 cut(s)	8
Eco24I	GRGCYC	1 cut(s)	549
Eco47I	GGWCC	2 cut(s)	354, 415
Eco52I	CGGCCG	1 cut(s)	8
Eco53kI	GAGCTC	1 cut(s)	547
Eco72I	CACGTG	1 cut(s)	600
Eco88I	CYCGRG	1 cut(s)	280
EcoICRI	GAGCTC	1 cut(s)	547
EcoRII	CCWGG	1 cut(s)	203
EcoT38I	GRGCYC	1 cut(s)	549
FaeI	CATG	1 cut(s)	732
FaiI	YATR	2 cut(s)	503, 730
FalI	AAGNNNNNCTT	2 cut(s)	656, 688
FatI	CATG	1 cut(s)	728
FauI	CCCGC	2 cut(s)	471, 580
Fnu4HI	GCNGC	8 cut(s)	8, 141, 144, 437, 440, 476, 530, 643
FokI	GGATG	3 cut(s)	40, 74, 263
FriOI	GRGCYC	1 cut(s)	549
Fsp4HI	GCNGC	8 cut(s)	8, 141, 144, 437, 440, 476, 530, 643
FspAI	RTGCGCAY	1 cut(s)	733
FspI	TGCGCA	1 cut(s)	733
GlaI	GCGC	5 cut(s)	103, 202, 296, 323, 733
GluI	GCNGC	8 cut(s)	8, 141, 144, 437, 440, 476, 530, 643
HaeIII	GGCC	4 cut(s)	10, 334, 512, 705
HapII	CCGG	3 cut(s)	281, 540, 584
HgaI	GACGC	2 cut(s)	163, 577
HhaI	GCGC	5 cut(s)	104, 203, 297, 324, 734
Hin1I	GRCGYC	1 cut(s)	588
Hin1II	CATG	1 cut(s)	732
Hin6I	GCGC	5 cut(s)	102, 201, 295, 322, 732
HinP1I	GCGC	5 cut(s)	102, 201, 295, 322, 732
HincII	GTYRAC	3 cut(s)	210, 455, 468
HindII	GTYRAC	3 cut(s)	210, 455, 468
HinfI	GANTC	4 cut(s)	34, 94, 180, 445
HpaII	CCGG	3 cut(s)	281, 540, 584
HphI	GGTGA	3 cut(s)	51, 161, 532
Hpy166II	GTNNAC	5 cut(s)	210, 307, 455, 468, 657
Hpy188I	TCNGA	5 cut(s)	33, 179, 259, 362, 374
Hpy188III	TCNNGA	4 cut(s)	91, 313, 550, 676
Hpy8I	GTNNAC	5 cut(s)	210, 307, 455, 468, 657
Hpy99I	CGWCG	2 cut(s)	110, 518
HpyAV	CCTTC	5 cut(s)	73, 79, 88, 557, 729
HpyCH4III	ACNGT	2 cut(s)	28, 358
HpyCH4IV	ACGT	2 cut(s)	44, 599
HpyCH4V	TGCA	4 cut(s)	351, 439, 532, 693
HpyF3I	CTNAG	3 cut(s)	258, 462, 660
HpySE526I	ACGT	2 cut(s)	44, 599
Hsp92I	GRCGYC	1 cut(s)	588
Hsp92II	CATG	1 cut(s)	732
HspAI	GCGC	5 cut(s)	102, 201, 295, 322, 732
KspI	CCGCGG	1 cut(s)	479
Kzo9I	GATC	2 cut(s)	362, 403
LmnI	GCTCC	1 cut(s)	278
Lsp1109I	GCAGC	4 cut(s)	423, 451, 516, 654
MaeII	ACGT	2 cut(s)	44, 599
MaeIII	GTNAC	1 cut(s)	593
MalI	GATC	2 cut(s)	364, 405
MboI	GATC	2 cut(s)	362, 403
MboII	GAAGA	2 cut(s)	162, 676
MflI	RGATCY	1 cut(s)	403
MhlI	GDGCHC	2 cut(s)	549, 719
MluCI	AATT	2 cut(s)	241, 366
MlyI	GAGTC	1 cut(s)	189
MmeI	TCCRAC	1 cut(s)	372
MroXI	GAANNNNTTC	1 cut(s)	671
MseI	TTAA	1 cut(s)	428
MspA1I	CMGCKG	1 cut(s)	478
MspI	CCGG	3 cut(s)	281, 540, 584
MspR9I	CCNGG	4 cut(s)	205, 281, 282, 585
MvaI	CCWGG	1 cut(s)	205
MvnI	CGCG	4 cut(s)	174, 201, 324, 478
NciI	CCSGG	3 cut(s)	281, 282, 585
NdeII	GATC	2 cut(s)	362, 403
NlaIII	CATG	1 cut(s)	732
NlaIV	GGNNCC	3 cut(s)	511, 582, 716
NmuCI	GTSAC	1 cut(s)	593
NsbI	TGCGCA	1 cut(s)	733
PcsI	WCGNNNNNNNCGW	1 cut(s)	540
PdmI	GAANNNNTTC	1 cut(s)	671
PfeI	GAWTC	3 cut(s)	34, 94, 445
PkrI	GCNGC	8 cut(s)	9, 142, 145, 438, 441, 477, 531, 644
PleI	GAGTC	1 cut(s)	188
PmaCI	CACGTG	1 cut(s)	600
PmlI	CACGTG	1 cut(s)	600
PpsI	GAGTC	1 cut(s)	188
Ppu21I	YACGTR	1 cut(s)	600
Psp124BI	GAGCTC	1 cut(s)	549
Psp6I	CCWGG	1 cut(s)	203
PspCI	CACGTG	1 cut(s)	600
PspGI	CCWGG	1 cut(s)	203
PspN4I	GGNNCC	3 cut(s)	511, 582, 716
PspPI	GGNCC	3 cut(s)	354, 415, 510
PstI	CTGCAG	2 cut(s)	353, 441
PstNI	CAGNNNCTG	1 cut(s)	448
PsuI	RGATCY	1 cut(s)	403
RsaI	GTAC	4 cut(s)	500, 611, 656, 685
RsaNI	GTAC	4 cut(s)	499, 610, 655, 684
SacI	GAGCTC	1 cut(s)	549
SacII	CCGCGG	1 cut(s)	479
SaqAI	TTAA	1 cut(s)	428
SatI	GCNGC	8 cut(s)	8, 141, 144, 437, 440, 476, 530, 643
Sau3AI	GATC	2 cut(s)	362, 403
Sau96I	GGNCC	3 cut(s)	354, 415, 510
SchI	GAGTC	1 cut(s)	189
ScrFI	CCNGG	4 cut(s)	205, 281, 282, 585
SduI	GDGCHC	2 cut(s)	549, 719
SfcI	CTRYAG	2 cut(s)	349, 437
Sfr303I	CCGCGG	1 cut(s)	479
SgrBI	CCGCGG	1 cut(s)	479
SinI	GGWCC	2 cut(s)	354, 415
SmaI	CCCGGG	1 cut(s)	282
SmlI	CTYRAG	1 cut(s)	548
SmoI	CTYRAG	1 cut(s)	548
Sse9I	AATT	2 cut(s)	241, 366
SstI	GAGCTC	1 cut(s)	549
StyD4I	CCNGG	4 cut(s)	203, 279, 280, 583
TaaI	ACNGT	2 cut(s)	28, 358
TaiI	ACGT	2 cut(s)	47, 602
TaqI	TCGA	2 cut(s)	342, 630
TasI	AATT	2 cut(s)	241, 366
TatI	WGTACW	1 cut(s)	654
TauI	GCSGC	4 cut(s)	10, 143, 146, 478
TfiI	GAWTC	3 cut(s)	34, 94, 445
Tru1I	TTAA	1 cut(s)	428
Tru9I	TTAA	1 cut(s)	428
TscAI	CASTG	1 cut(s)	664
TseFI	GTSAC	1 cut(s)	593
TseI	GCWGC	4 cut(s)	436, 439, 529, 642
Tsp45I	GTSAC	1 cut(s)	593
TspDTI	ATGAA	3 cut(s)	252, 475, 717
TspMI	CCCGGG	1 cut(s)	280
TspRI	CASTG	1 cut(s)	664
VpaK11BI	GGWCC	2 cut(s)	354, 415
XapI	RAATTY	1 cut(s)	241
XmaI	CCCGGG	1 cut(s)	280
XmnI	GAANNNNTTC	1 cut(s)	671

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.