Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr01

Orthogroup ID

OG0003557

Physical Location & Seq

Genomic Coordinates Reverse (-)

26436675 .. 26437376

Gene Structure 702 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD01G1157000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 702 bp

ATGTGGTCACCATGGCTGAAATCACCAAGCAGGGTGCACACAACCAAACCAGCGCGGTCACAGAGGAGCTTTTCCTGCTCATCTTTCAAAGACATCCAAAACCTCTGTGAACCCGAACCTGCATCCGAGGTCCTAAGCCCGCGGAGCGCGTCCATTTTGCACCGGGTCAAAATATCCACCTCAGCCCTTCGCTTGTGGGCCCACCGAAACGCGAATCCACCAGACGCCGACCAGCGCGTGGTCATCTACCACACCAGCCTCCGCGTCGTGCGCAGGACATTCGAGGACTGTAAAACCGTCCGATCCATCCTCCGCGGATTTCGCGTCCCGATCGACGAGCGAGATCTGTCTATGGACGGGAAGTTCCTGGACGAGCTGCAGGCGATCACGGGGAACAAGACTTTGACTCTGCCGATGGTTTTCATTGGCGGGCTCTTCATTGGTGGGGTCGAGGAGGTCAAACAGCTCCACGAGAGCGGGCAACTGAAGAGGTTGATCCAACGGCTGCCAGTGGTGGACCCCAGAGCGTGCGATTTCTGTGGAGGGCTGAGATTTGTTCTCTGTCAGACGTGTGATGGGAGCCATAAGGTCTATCATGAGAAGATTGGATTTACTCCTTGTACGGTATGCAACATCAACGGTTTGGTTAAGTGCCCCTCGTGTGCTCCGGTGCGGCGGCTCCACAGGGAGTGTACCCTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glutaredoxin

Protein Analysis

234

Amino Acids

26.28

Weight (kDa)

9.36

Isoelectric Point (pI)

64.95

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glutaredoxin	PF00462	80 - 147	7e-11	Glutaredoxin
GRXCR1-2_C	PF23733	177 - 221	2.1e-18	GRXCR1/2, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003557)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G58530
fragaria_vesca	FvH4_3g39350 FvH4_7g24960
malus_domestica	MD01G1157000.v1.1 MD03G1062300.v1.1 MD07G1225800.v1.1 MD11G1065900.v1.1
prunus_persica	Prupe.2G254600_v2.0.a1 Prupe.6G052300_v2.0.a1
pyrus_communis	pycom03g04980 pycom06g13500
rosa_chinensis	RchiOBHm_Chr1g0370851 RchiOBHm_Chr1g0370861 RchiOBHm_Chr5g0070781
rosa_laevigata	RLG00000027004 RLG00000036158
rosa_multiflora	Rmu_sc0002944.1_g000025 Rmu_sc0009474.1_g000015 Rmu_sc0009474.1_g000016
rosa_roxburghii	Rroxscaffold_1G00010370 Rroxscaffold_4G00286180 Rroxscaffold_4G00286190
rosa_rugosa	Rorug01G0360000 Rorug05G0408500
rosa_samantha	Rh1AG369600 Rh1BG333100 Rh1CG346600 Rh1DG364300 Rh5AG463900 Rh5BG481700 Rh5CG506200 Rh5DG494600
rosa_wichuraiana	Rw1G032530 Rw1G032540 Rw5G043180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	272
Acc36I	ACCTGC	1 cut(s)	127
AccB7I	CCANNNNNTGG	1 cut(s)	238
AccBSI	CCGCTC	1 cut(s)	477
AccII	CGCG	8 cut(s)	55, 142, 149, 212, 237, 264, 315, 324
AclWI	GGATC	2 cut(s)	297, 490
AcuI	CTGAAG	1 cut(s)	506
AcyI	GRCGYC	1 cut(s)	225
AfaI	GTAC	2 cut(s)	622, 694
AfiI	CCNNNNNNNGG	1 cut(s)	238
AflIII	ACRYGT	1 cut(s)	569
AgsI	TTSAA	1 cut(s)	88
AjiI	CACGTC	1 cut(s)	570
AjnI	CCWGG	1 cut(s)	366
AloI	GAACNNNNNNTCC	2 cut(s)	347, 379
AluBI	AGCT	3 cut(s)	69, 376, 466
AluI	AGCT	3 cut(s)	69, 376, 466
Alw21I	GWGCWC	2 cut(s)	39, 667
Alw44I	GTGCAC	1 cut(s)	35
AlwI	GGATC	2 cut(s)	297, 490
AoxI	GGCC	1 cut(s)	198
ApaI	GGGCCC	1 cut(s)	202
ApaLI	GTGCAC	1 cut(s)	35
ApeKI	GCWGC	2 cut(s)	376, 505
AspLEI	GCGC	4 cut(s)	55, 149, 237, 273
AspS9I	GGNCC	4 cut(s)	130, 198, 199, 517
AsuC2I	CCSGG	1 cut(s)	164
AsuHPI	GGTGA	1 cut(s)	15
AvaII	GGWCC	2 cut(s)	130, 517
BaeGI	GKGCMC	3 cut(s)	39, 202, 656
BanII	GRGCYC	2 cut(s)	202, 435
BauI	CACGAG	2 cut(s)	470, 658
Bbv12I	GWGCWC	2 cut(s)	39, 667
BbvCI	CCTCAGC	1 cut(s)	181
BbvI	GCAGC	2 cut(s)	363, 492
BccI	CCATC	3 cut(s)	314, 409, 569
BceAI	ACGGC	1 cut(s)	518
BcgI	CGANNNNNNTGC	2 cut(s)	262, 296
BciT130I	CCWGG	1 cut(s)	368
BcnI	CCSGG	1 cut(s)	164
BfmI	CTRYAG	1 cut(s)	377
BfuAI	ACCTGC	1 cut(s)	127
BglII	AGATCT	1 cut(s)	343
BisI	GCNGC	4 cut(s)	377, 506, 674, 677
BlsI	GCNGC	4 cut(s)	378, 507, 675, 678
Bme1390I	CCNGG	2 cut(s)	164, 368
Bme18I	GGWCC	2 cut(s)	130, 517
BmgBI	CACGTC	1 cut(s)	570
BmgT120I	GGNCC	4 cut(s)	130, 198, 199, 517
BmiI	GGNNCC	4 cut(s)	200, 519, 581, 680
BmrFI	CCNGG	2 cut(s)	164, 368
BmsI	GCATC	1 cut(s)	131
Bpu10I	CCTNAGC	2 cut(s)	134, 181
BpuMI	CCSGG	1 cut(s)	164
BsaHI	GRCGYC	1 cut(s)	225
BsaJI	CCNNGG	4 cut(s)	11, 126, 140, 313
BsaWI	WCCGGW	1 cut(s)	667
Bsc4I	CCNNNNNNNGG	1 cut(s)	238
Bse1I	ACTGG	1 cut(s)	509
BseBI	CCWGG	1 cut(s)	368
BseDI	CCNNGG	4 cut(s)	11, 126, 140, 313
BseGI	GGATG	3 cut(s)	93, 122, 306
BseLI	CCNNNNNNNGG	1 cut(s)	238
BseMII	CTCAG	2 cut(s)	195, 539
BseNI	ACTGG	1 cut(s)	509
BseRI	GAGGAG	2 cut(s)	79, 467
BseSI	GKGCMC	3 cut(s)	39, 202, 656
BseXI	GCAGC	2 cut(s)	363, 492
Bsh1236I	CGCG	8 cut(s)	55, 142, 149, 212, 237, 264, 315, 324
Bsh1285I	CGRYCG	1 cut(s)	333
BshFI	GGCC	1 cut(s)	200
BsiEI	CGRYCG	1 cut(s)	333
BsiHKAI	GWGCWC	2 cut(s)	39, 667
BsiSI	CCGG	2 cut(s)	163, 668
BslFI	GGGAC	1 cut(s)	311
BslI	CCNNNNNNNGG	1 cut(s)	238
BsmFI	GGGAC	1 cut(s)	311
BsnI	GGCC	1 cut(s)	200
Bsp120I	GGGCCC	1 cut(s)	198
Bsp1286I	GDGCHC	5 cut(s)	39, 202, 435, 656, 667
Bsp143I	GATC	5 cut(s)	302, 330, 343, 384, 495
Bsp19I	CCATGG	1 cut(s)	11
BspANI	GGCC	1 cut(s)	200
BspCNI	CTCAG	2 cut(s)	194, 540
BspFNI	CGCG	8 cut(s)	55, 142, 149, 212, 237, 264, 315, 324
BspHI	TCATGA	1 cut(s)	595
BspLI	GGNNCC	4 cut(s)	200, 519, 581, 680
BspMAI	CTGCAG	1 cut(s)	381
BspMI	ACCTGC	1 cut(s)	127
BspPI	GGATC	2 cut(s)	297, 490
BspQI	GCTCTTC	1 cut(s)	440
BsrBI	CCGCTC	1 cut(s)	477
BsrI	ACTGG	1 cut(s)	509
BssECI	CCNNGG	4 cut(s)	11, 126, 140, 313
BssMI	GATC	5 cut(s)	302, 330, 343, 384, 495
BssNI	GRCGYC	1 cut(s)	225
BssSI	CACGAG	2 cut(s)	470, 658
BssT1I	CCWWGG	1 cut(s)	11
Bst2BI	CACGAG	2 cut(s)	470, 658
Bst2UI	CCWGG	1 cut(s)	368
Bst4CI	ACNGT	4 cut(s)	290, 298, 625, 641
Bst6I	CTCTTC	2 cut(s)	440, 482
BstACI	GRCGYC	1 cut(s)	225
BstC8I	GCNNGC	5 cut(s)	140, 381, 431, 479, 529
BstDEI	CTNAG	3 cut(s)	134, 181, 548
BstDSI	CCRYGG	3 cut(s)	11, 140, 313
BstEII	GGTNACC	1 cut(s)	6
BstF5I	GGATG	3 cut(s)	93, 122, 306
BstFNI	CGCG	8 cut(s)	55, 142, 149, 212, 237, 264, 315, 324
BstHHI	GCGC	4 cut(s)	55, 149, 237, 273
BstKTI	GATC	5 cut(s)	305, 333, 346, 387, 498
BstMBI	GATC	5 cut(s)	302, 330, 343, 384, 495
BstMCI	CGRYCG	1 cut(s)	333
BstMWI	GCNNNNNNNGC	4 cut(s)	75, 144, 270, 321
BstNI	CCWGG	1 cut(s)	368
BstPI	GGTNACC	1 cut(s)	6
BstSCI	CCNGG	2 cut(s)	162, 366
BstSFI	CTRYAG	1 cut(s)	377
BstSLI	GKGCMC	3 cut(s)	39, 202, 656
BstUI	CGCG	8 cut(s)	55, 142, 149, 212, 237, 264, 315, 324
BstV1I	GCAGC	2 cut(s)	363, 492
BstX2I	RGATCY	1 cut(s)	343
BstYI	RGATCY	1 cut(s)	343
BsuRI	GGCC	1 cut(s)	200
BtgI	CCRYGG	3 cut(s)	11, 140, 313
BtrI	CACGTC	1 cut(s)	570
BtsCI	GGATG	3 cut(s)	93, 122, 306
BtsIMutI	CAGTG	1 cut(s)	516
BveI	ACCTGC	1 cut(s)	127
Cac8I	GCNNGC	5 cut(s)	140, 381, 431, 479, 529
CciI	TCATGA	1 cut(s)	595
CfoI	GCGC	4 cut(s)	55, 149, 237, 273
Cfr13I	GGNCC	4 cut(s)	130, 198, 199, 517
Cfr42I	CCGCGG	2 cut(s)	143, 316
CseI	GACGC	4 cut(s)	138, 233, 253, 313
Csp6I	GTAC	2 cut(s)	621, 693
CviAII	CATG	2 cut(s)	12, 596
CviQI	GTAC	2 cut(s)	621, 693
DdeI	CTNAG	3 cut(s)	134, 181, 548
DpnI	GATC	5 cut(s)	304, 332, 345, 386, 497
DpnII	GATC	5 cut(s)	302, 330, 343, 384, 495
Eam1104I	CTCTTC	2 cut(s)	440, 482
EarI	CTCTTC	2 cut(s)	440, 482
Eco130I	CCWWGG	1 cut(s)	11
Eco24I	GRGCYC	2 cut(s)	202, 435
Eco47I	GGWCC	2 cut(s)	130, 517
Eco57I	CTGAAG	1 cut(s)	506
Eco91I	GGTNACC	1 cut(s)	6
EcoO109I	RGGNCCY	1 cut(s)	130
EcoO65I	GGTNACC	1 cut(s)	6
EcoRII	CCWGG	1 cut(s)	366
EcoT14I	CCWWGG	1 cut(s)	11
EcoT38I	GRGCYC	2 cut(s)	202, 435
ErhI	CCWWGG	1 cut(s)	11
FaeI	CATG	2 cut(s)	15, 599
FaiI	YATR	5 cut(s)	13, 353, 585, 597, 628
FaqI	GGGAC	1 cut(s)	311
FatI	CATG	2 cut(s)	11, 595
FauI	CCCGC	3 cut(s)	147, 422, 470
Fnu4HI	GCNGC	4 cut(s)	377, 506, 674, 677
FokI	GGATG	3 cut(s)	80, 109, 293
FriOI	GRGCYC	2 cut(s)	202, 435
Fsp4HI	GCNGC	4 cut(s)	377, 506, 674, 677
FspI	TGCGCA	1 cut(s)	272
GlaI	GCGC	4 cut(s)	54, 148, 236, 272
GluI	GCNGC	4 cut(s)	377, 506, 674, 677
HaeIII	GGCC	1 cut(s)	200
HapII	CCGG	2 cut(s)	163, 668
HgaI	GACGC	4 cut(s)	138, 233, 253, 313
HhaI	GCGC	4 cut(s)	55, 149, 237, 273
Hin1I	GRCGYC	1 cut(s)	225
Hin1II	CATG	2 cut(s)	15, 599
Hin6I	GCGC	4 cut(s)	53, 147, 235, 271
HinP1I	GCGC	4 cut(s)	53, 147, 235, 271
HinfI	GANTC	2 cut(s)	214, 406
HpaII	CCGG	2 cut(s)	163, 668
HphI	GGTGA	1 cut(s)	15
Hpy166II	GTNNAC	4 cut(s)	37, 110, 517, 693
Hpy188I	TCNGA	3 cut(s)	127, 302, 567
Hpy188III	TCNNGA	2 cut(s)	328, 596
Hpy8I	GTNNAC	4 cut(s)	37, 110, 517, 693
Hpy99I	CGWCG	2 cut(s)	269, 338
HpyAV	CCTTC	1 cut(s)	197
HpyCH4III	ACNGT	4 cut(s)	290, 298, 625, 641
HpyCH4IV	ACGT	1 cut(s)	569
HpyCH4V	TGCA	5 cut(s)	37, 122, 160, 379, 630
HpyF10VI	GCNNNNNNNGC	4 cut(s)	75, 144, 270, 321
HpyF3I	CTNAG	3 cut(s)	134, 181, 548
HpySE526I	ACGT	1 cut(s)	569
Hsp92I	GRCGYC	1 cut(s)	225
Hsp92II	CATG	2 cut(s)	15, 599
HspAI	GCGC	4 cut(s)	53, 147, 235, 271
KspI	CCGCGG	2 cut(s)	143, 316
Kzo9I	GATC	5 cut(s)	302, 330, 343, 384, 495
LguI	GCTCTTC	1 cut(s)	440
LmnI	GCTCC	6 cut(s)	66, 144, 471, 579, 670, 684
Lsp1109I	GCAGC	2 cut(s)	363, 492
LweI	GCATC	1 cut(s)	131
MaeII	ACGT	1 cut(s)	569
MaeIII	GTNAC	2 cut(s)	6, 57
MalI	GATC	5 cut(s)	304, 332, 345, 386, 497
MbiI	CCGCTC	1 cut(s)	477
MboI	GATC	5 cut(s)	302, 330, 343, 384, 495
MboII	GAAGA	3 cut(s)	427, 499, 613
MflI	RGATCY	1 cut(s)	343
MhlI	GDGCHC	5 cut(s)	39, 202, 435, 656, 667
MlyI	GAGTC	1 cut(s)	400
MmeI	TCCRAC	1 cut(s)	523
MseI	TTAA	1 cut(s)	648
MspA1I	CMGCKG	2 cut(s)	142, 315
MspI	CCGG	2 cut(s)	163, 668
MspR9I	CCNGG	2 cut(s)	164, 368
MvaI	CCWGG	1 cut(s)	368
MvnI	CGCG	8 cut(s)	55, 142, 149, 212, 237, 264, 315, 324
MwoI	GCNNNNNNNGC	4 cut(s)	75, 144, 270, 321
NciI	CCSGG	1 cut(s)	164
NcoI	CCATGG	1 cut(s)	11
NdeII	GATC	5 cut(s)	302, 330, 343, 384, 495
NlaIII	CATG	2 cut(s)	15, 599
NlaIV	GGNNCC	4 cut(s)	200, 519, 581, 680
NmuCI	GTSAC	2 cut(s)	6, 57
NsbI	TGCGCA	1 cut(s)	272
PagI	TCATGA	1 cut(s)	595
PciSI	GCTCTTC	1 cut(s)	440
PfeI	GAWTC	1 cut(s)	214
PflMI	CCANNNNNTGG	1 cut(s)	238
PfoI	TCCNGGA	1 cut(s)	366
PkrI	GCNGC	4 cut(s)	378, 507, 675, 678
Ple19I	CGATCG	1 cut(s)	333
PleI	GAGTC	1 cut(s)	400
PpsI	GAGTC	1 cut(s)	400
PpuMI	RGGWCCY	1 cut(s)	130
Psp5II	RGGWCCY	1 cut(s)	130
Psp6I	CCWGG	1 cut(s)	366
PspEI	GGTNACC	1 cut(s)	6
PspGI	CCWGG	1 cut(s)	366
PspN4I	GGNNCC	4 cut(s)	200, 519, 581, 680
PspOMI	GGGCCC	1 cut(s)	198
PspPI	GGNCC	4 cut(s)	130, 198, 199, 517
PspPPI	RGGWCCY	1 cut(s)	130
PstI	CTGCAG	1 cut(s)	381
PsuI	RGATCY	1 cut(s)	343
PvuI	CGATCG	1 cut(s)	333
RsaI	GTAC	2 cut(s)	622, 694
RsaNI	GTAC	2 cut(s)	621, 693
SacII	CCGCGG	2 cut(s)	143, 316
SapI	GCTCTTC	1 cut(s)	440
SaqAI	TTAA	1 cut(s)	648
SatI	GCNGC	4 cut(s)	377, 506, 674, 677
Sau3AI	GATC	5 cut(s)	302, 330, 343, 384, 495
Sau96I	GGNCC	4 cut(s)	130, 198, 199, 517
SchI	GAGTC	1 cut(s)	400
ScrFI	CCNGG	2 cut(s)	164, 368
SduI	GDGCHC	5 cut(s)	39, 202, 435, 656, 667
SfaNI	GCATC	1 cut(s)	131
SfcI	CTRYAG	1 cut(s)	377
Sfr303I	CCGCGG	2 cut(s)	143, 316
SgrBI	CCGCGG	2 cut(s)	143, 316
SinI	GGWCC	2 cut(s)	130, 517
StyD4I	CCNGG	2 cut(s)	162, 366
StyI	CCWWGG	1 cut(s)	11
TaaI	ACNGT	4 cut(s)	290, 298, 625, 641
TaiI	ACGT	1 cut(s)	572
TaqI	TCGA	3 cut(s)	282, 333, 450
TauI	GCSGC	2 cut(s)	676, 679
TfiI	GAWTC	1 cut(s)	214
Tru1I	TTAA	1 cut(s)	648
Tru9I	TTAA	1 cut(s)	648
TscAI	CASTG	1 cut(s)	516
TseFI	GTSAC	2 cut(s)	6, 57
TseI	GCWGC	2 cut(s)	376, 505
Tsp45I	GTSAC	2 cut(s)	6, 57
TspDTI	ATGAA	2 cut(s)	412, 427
TspRI	CASTG	1 cut(s)	516
Van91I	CCANNNNNTGG	1 cut(s)	238
VneI	GTGCAC	1 cut(s)	35
VpaK11BI	GGWCC	2 cut(s)	130, 517

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.