Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr07

Orthogroup ID

OG0003557

Physical Location & Seq

Genomic Coordinates Reverse (-)

30193610 .. 30194305

Gene Structure 696 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD07G1225800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 696 bp

ATGTGGTCACCATGGCTGAAATCACCGAGCAGGGTGCACACAAATAAACCAGCGCGGTCACAGAGGAGCTTCTCCTGCTCATCCTTCAAAGATATCCAAAACCTCTGCGAACCCGAACCCGAATCCGAGGTCCTAAGCCCGCGGAGCTCTTCCATTTTGCACCGGGTCAAAATATCCACCTCAGTCCTTCGGTTGTGGGCCCACCGAAACGCGACTCCACCAGACGCCGACCAGCGCGTGGTAATCTACTACACCAGCCTCCGCGTCGTCCGCAGGACCTTCGAGGACTGCAAAGCCGTCCGATCCATTCTCCGTGGATTTCGCGTCCCCATCGACGAGCGAGATCTGTCTATGGACGGGAAGTTCCTGGACGAGCTGCAGGCGATTACGGGGAACAAGACTCTGACTCTGCCGATGGTTTTCATTGGCGGGCTCTTCATTGGTGGGGCCGAGGAGGTCAAACAGCTCCACGACATAGGAGAATTGAAGAGGCTGATCGAACGGCTACCAGTGGTAGACTCCAGAGCGTGCGATTTGTGTGGAGGGCTGAGATTTGTTCTCTGTCAGACGTGTGATGGGAGCCATAAGGTCTATTTTGAGAAGATTGGGTTTAAACCTTGTACCGTATGCAACGTCAACGGTCTGATTATGTGCCCTTCGTGTGCTCCGGTACGGCGGCGGCACAGAGAATTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glutaredoxin

Protein Analysis

232

Amino Acids

26.24

Weight (kDa)

9.22

Isoelectric Point (pI)

67.71

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glutaredoxin	PF00462	81 - 147	1.4e-11	Glutaredoxin
GRXCR1-2_C	PF23733	177 - 221	2.7e-18	GRXCR1/2, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003557)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G58530
fragaria_vesca	FvH4_3g39350 FvH4_7g24960
malus_domestica	MD01G1157000.v1.1 MD03G1062300.v1.1 MD07G1225800.v1.1 MD11G1065900.v1.1
prunus_persica	Prupe.2G254600_v2.0.a1 Prupe.6G052300_v2.0.a1
pyrus_communis	pycom03g04980 pycom06g13500
rosa_chinensis	RchiOBHm_Chr1g0370851 RchiOBHm_Chr1g0370861 RchiOBHm_Chr5g0070781
rosa_laevigata	RLG00000027004 RLG00000036158
rosa_multiflora	Rmu_sc0002944.1_g000025 Rmu_sc0009474.1_g000015 Rmu_sc0009474.1_g000016
rosa_roxburghii	Rroxscaffold_1G00010370 Rroxscaffold_4G00286180 Rroxscaffold_4G00286190
rosa_rugosa	Rorug01G0360000 Rorug05G0408500
rosa_samantha	Rh1AG369600 Rh1BG333100 Rh1CG346600 Rh1DG364300 Rh5AG463900 Rh5BG481700 Rh5CG506200 Rh5DG494600
rosa_wichuraiana	Rw1G032530 Rw1G032540 Rw5G043180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	238
AccI	GTMKAC	1 cut(s)	516
AccII	CGCG	6 cut(s)	55, 142, 212, 237, 264, 324
AciI	CCGC	8 cut(s)	55, 140, 142, 262, 271, 429, 676, 679
AclWI	GGATC	1 cut(s)	297
AcsI	RAATTY	1 cut(s)	689
AcyI	GRCGYC	1 cut(s)	225
AfaI	GTAC	2 cut(s)	622, 672
AfiI	CCNNNNNNNGG	1 cut(s)	238
AflIII	ACRYGT	1 cut(s)	569
AgsI	TTSAA	2 cut(s)	88, 487
AjiI	CACGTC	1 cut(s)	570
AjnI	CCWGG	1 cut(s)	366
AloI	GAACNNNNNNTCC	2 cut(s)	347, 379
AluBI	AGCT	4 cut(s)	69, 147, 376, 466
AluI	AGCT	4 cut(s)	69, 147, 376, 466
Alw21I	GWGCWC	3 cut(s)	39, 149, 667
Alw44I	GTGCAC	1 cut(s)	35
AlwI	GGATC	1 cut(s)	297
AoxI	GGCC	2 cut(s)	198, 447
ApaI	GGGCCC	1 cut(s)	202
ApaLI	GTGCAC	1 cut(s)	35
ApeKI	GCWGC	1 cut(s)	376
ApoI	RAATTY	1 cut(s)	689
ArsI	GACNNNNNNTTYG	2 cut(s)	114, 146
AspLEI	GCGC	2 cut(s)	55, 237
AspS9I	GGNCC	5 cut(s)	130, 198, 199, 276, 447
AsuC2I	CCSGG	1 cut(s)	164
AsuHPI	GGTGA	1 cut(s)	15
AvaII	GGWCC	2 cut(s)	130, 276
BaeGI	GKGCMC	3 cut(s)	39, 202, 656
BanII	GRGCYC	3 cut(s)	149, 202, 435
Bbv12I	GWGCWC	3 cut(s)	39, 149, 667
BbvI	GCAGC	1 cut(s)	363
BccI	CCATC	3 cut(s)	338, 409, 569
BceAI	ACGGC	3 cut(s)	281, 518, 689
BcgI	CGANNNNNNTGC	4 cut(s)	16, 50, 262, 296
BciT130I	CCWGG	1 cut(s)	368
BcnI	CCSGG	1 cut(s)	164
BfaI	CTAG	1 cut(s)	694
BfmI	CTRYAG	1 cut(s)	377
BglII	AGATCT	1 cut(s)	343
BisI	GCNGC	3 cut(s)	377, 677, 680
BlsI	GCNGC	3 cut(s)	378, 678, 681
Bme1390I	CCNGG	2 cut(s)	164, 368
Bme18I	GGWCC	2 cut(s)	130, 276
BmgBI	CACGTC	1 cut(s)	570
BmgT120I	GGNCC	5 cut(s)	130, 198, 199, 276, 447
BmiI	GGNNCC	3 cut(s)	200, 448, 581
BmrFI	CCNGG	2 cut(s)	164, 368
BpmI	CTGGAG	1 cut(s)	505
Bpu10I	CCTNAGC	1 cut(s)	134
BpuMI	CCSGG	1 cut(s)	164
BsaHI	GRCGYC	1 cut(s)	225
BsaJI	CCNNGG	5 cut(s)	11, 126, 140, 313, 450
BsaWI	WCCGGW	1 cut(s)	667
Bsc4I	CCNNNNNNNGG	1 cut(s)	238
Bse1I	ACTGG	1 cut(s)	509
BseBI	CCWGG	1 cut(s)	368
BseDI	CCNNGG	5 cut(s)	11, 126, 140, 313, 450
BseGI	GGATG	1 cut(s)	80
BseLI	CCNNNNNNNGG	1 cut(s)	238
BseMII	CTCAG	2 cut(s)	195, 539
BseNI	ACTGG	1 cut(s)	509
BseRI	GAGGAG	2 cut(s)	79, 467
BseSI	GKGCMC	3 cut(s)	39, 202, 656
BseXI	GCAGC	1 cut(s)	363
Bsh1236I	CGCG	6 cut(s)	55, 142, 212, 237, 264, 324
BshFI	GGCC	2 cut(s)	200, 449
BsiHKAI	GWGCWC	3 cut(s)	39, 149, 667
BsiSI	CCGG	2 cut(s)	163, 668
BslFI	GGGAC	1 cut(s)	311
BslI	CCNNNNNNNGG	1 cut(s)	238
BsmFI	GGGAC	1 cut(s)	311
BsnI	GGCC	2 cut(s)	200, 449
Bsp120I	GGGCCC	1 cut(s)	198
Bsp1286I	GDGCHC	6 cut(s)	39, 149, 202, 435, 656, 667
Bsp143I	GATC	3 cut(s)	302, 343, 495
Bsp19I	CCATGG	1 cut(s)	11
BspACI	CCGC	8 cut(s)	55, 140, 142, 262, 271, 429, 676, 679
BspANI	GGCC	2 cut(s)	200, 449
BspCNI	CTCAG	2 cut(s)	194, 540
BspFNI	CGCG	6 cut(s)	55, 142, 212, 237, 264, 324
BspLI	GGNNCC	3 cut(s)	200, 448, 581
BspMAI	CTGCAG	1 cut(s)	381
BspPI	GGATC	1 cut(s)	297
BspQI	GCTCTTC	2 cut(s)	154, 440
BsrI	ACTGG	1 cut(s)	509
BssECI	CCNNGG	5 cut(s)	11, 126, 140, 313, 450
BssMI	GATC	3 cut(s)	302, 343, 495
BssNI	GRCGYC	1 cut(s)	225
BssT1I	CCWWGG	1 cut(s)	11
Bst2UI	CCWGG	1 cut(s)	368
Bst4CI	ACNGT	2 cut(s)	625, 641
Bst6I	CTCTTC	3 cut(s)	154, 440, 482
BstACI	GRCGYC	1 cut(s)	225
BstC8I	GCNNGC	4 cut(s)	140, 381, 431, 529
BstDEI	CTNAG	3 cut(s)	134, 181, 548
BstDSI	CCRYGG	3 cut(s)	11, 140, 313
BstEII	GGTNACC	1 cut(s)	6
BstF5I	GGATG	1 cut(s)	80
BstFNI	CGCG	6 cut(s)	55, 142, 212, 237, 264, 324
BstHHI	GCGC	2 cut(s)	55, 237
BstKTI	GATC	3 cut(s)	305, 346, 498
BstMBI	GATC	3 cut(s)	302, 343, 495
BstMWI	GCNNNNNNNGC	3 cut(s)	75, 144, 270
BstNI	CCWGG	1 cut(s)	368
BstPI	GGTNACC	1 cut(s)	6
BstSCI	CCNGG	2 cut(s)	162, 366
BstSFI	CTRYAG	1 cut(s)	377
BstSLI	GKGCMC	3 cut(s)	39, 202, 656
BstUI	CGCG	6 cut(s)	55, 142, 212, 237, 264, 324
BstV1I	GCAGC	1 cut(s)	363
BstX2I	RGATCY	1 cut(s)	343
BstYI	RGATCY	1 cut(s)	343
BsuRI	GGCC	2 cut(s)	200, 449
BtgI	CCRYGG	3 cut(s)	11, 140, 313
BtrI	CACGTC	1 cut(s)	570
BtsCI	GGATG	1 cut(s)	80
BtsIMutI	CAGTG	1 cut(s)	516
Cac8I	GCNNGC	4 cut(s)	140, 381, 431, 529
CfoI	GCGC	2 cut(s)	55, 237
Cfr13I	GGNCC	5 cut(s)	130, 198, 199, 276, 447
Cfr42I	CCGCGG	1 cut(s)	143
CseI	GACGC	3 cut(s)	233, 253, 313
Csp6I	GTAC	2 cut(s)	621, 671
CviAII	CATG	1 cut(s)	12
CviQI	GTAC	2 cut(s)	621, 671
DdeI	CTNAG	3 cut(s)	134, 181, 548
DpnI	GATC	3 cut(s)	304, 345, 497
DpnII	GATC	3 cut(s)	302, 343, 495
DraI	TTTAAA	1 cut(s)	613
Eam1104I	CTCTTC	3 cut(s)	154, 440, 482
EarI	CTCTTC	3 cut(s)	154, 440, 482
Ecl136II	GAGCTC	1 cut(s)	147
Eco130I	CCWWGG	1 cut(s)	11
Eco24I	GRGCYC	3 cut(s)	149, 202, 435
Eco32I	GATATC	1 cut(s)	94
Eco47I	GGWCC	2 cut(s)	130, 276
Eco53kI	GAGCTC	1 cut(s)	147
Eco91I	GGTNACC	1 cut(s)	6
EcoICRI	GAGCTC	1 cut(s)	147
EcoO109I	RGGNCCY	2 cut(s)	130, 276
EcoO65I	GGTNACC	1 cut(s)	6
EcoRI	GAATTC	1 cut(s)	689
EcoRII	CCWGG	1 cut(s)	366
EcoRV	GATATC	1 cut(s)	94
EcoT14I	CCWWGG	1 cut(s)	11
EcoT38I	GRGCYC	3 cut(s)	149, 202, 435
ErhI	CCWWGG	1 cut(s)	11
FaeI	CATG	1 cut(s)	15
FaiI	YATR	6 cut(s)	13, 353, 476, 585, 628, 650
FaqI	GGGAC	1 cut(s)	311
FatI	CATG	1 cut(s)	11
FauI	CCCGC	2 cut(s)	147, 422
FblI	GTMKAC	1 cut(s)	516
Fnu4HI	GCNGC	3 cut(s)	377, 677, 680
FokI	GGATG	1 cut(s)	67
FriOI	GRGCYC	3 cut(s)	149, 202, 435
Fsp4HI	GCNGC	3 cut(s)	377, 677, 680
FspBI	CTAG	1 cut(s)	694
GlaI	GCGC	2 cut(s)	54, 236
GluI	GCNGC	3 cut(s)	377, 677, 680
GsuI	CTGGAG	1 cut(s)	505
HaeIII	GGCC	2 cut(s)	200, 449
HapII	CCGG	2 cut(s)	163, 668
HgaI	GACGC	3 cut(s)	233, 253, 313
HhaI	GCGC	2 cut(s)	55, 237
Hin1I	GRCGYC	1 cut(s)	225
Hin1II	CATG	1 cut(s)	15
Hin6I	GCGC	2 cut(s)	53, 235
HinP1I	GCGC	2 cut(s)	53, 235
HincII	GTYRAC	1 cut(s)	637
HindII	GTYRAC	1 cut(s)	637
HinfI	GANTC	5 cut(s)	122, 214, 400, 406, 518
HpaII	CCGG	2 cut(s)	163, 668
HphI	GGTGA	1 cut(s)	15
Hpy166II	GTNNAC	3 cut(s)	37, 517, 637
Hpy188I	TCNGA	5 cut(s)	127, 302, 405, 567, 645
Hpy188III	TCNNGA	1 cut(s)	522
Hpy8I	GTNNAC	3 cut(s)	37, 517, 637
Hpy99I	CGWCG	2 cut(s)	269, 338
HpyAV	CCTTC	4 cut(s)	94, 197, 289, 666
HpyCH4III	ACNGT	2 cut(s)	625, 641
HpyCH4IV	ACGT	2 cut(s)	569, 633
HpyCH4V	TGCA	5 cut(s)	37, 160, 291, 379, 630
HpyF10VI	GCNNNNNNNGC	3 cut(s)	75, 144, 270
HpyF3I	CTNAG	3 cut(s)	134, 181, 548
HpySE526I	ACGT	2 cut(s)	569, 633
Hsp92I	GRCGYC	1 cut(s)	225
Hsp92II	CATG	1 cut(s)	15
HspAI	GCGC	2 cut(s)	53, 235
KspI	CCGCGG	1 cut(s)	143
Kzo9I	GATC	3 cut(s)	302, 343, 495
LguI	GCTCTTC	2 cut(s)	154, 440
LmnI	GCTCC	5 cut(s)	66, 144, 471, 579, 670
Lsp1109I	GCAGC	1 cut(s)	363
MaeI	CTAG	1 cut(s)	694
MaeII	ACGT	2 cut(s)	569, 633
MaeIII	GTNAC	2 cut(s)	6, 57
MalI	GATC	3 cut(s)	304, 345, 497
MboI	GATC	3 cut(s)	302, 343, 495
MboII	GAAGA	4 cut(s)	141, 427, 499, 613
MflI	RGATCY	1 cut(s)	343
MhlI	GDGCHC	6 cut(s)	39, 149, 202, 435, 656, 667
MluCI	AATT	2 cut(s)	482, 689
MlyI	GAGTC	4 cut(s)	208, 394, 400, 512
MseI	TTAA	1 cut(s)	612
MspA1I	CMGCKG	1 cut(s)	142
MspI	CCGG	2 cut(s)	163, 668
MspR9I	CCNGG	2 cut(s)	164, 368
MssI	GTTTAAAC	1 cut(s)	613
MvaI	CCWGG	1 cut(s)	368
MvnI	CGCG	6 cut(s)	55, 142, 212, 237, 264, 324
MwoI	GCNNNNNNNGC	3 cut(s)	75, 144, 270
NciI	CCSGG	1 cut(s)	164
NcoI	CCATGG	1 cut(s)	11
NdeII	GATC	3 cut(s)	302, 343, 495
NlaIII	CATG	1 cut(s)	15
NlaIV	GGNNCC	3 cut(s)	200, 448, 581
NmeAIII	GCCGAG	1 cut(s)	475
NmuCI	GTSAC	2 cut(s)	6, 57
PciSI	GCTCTTC	2 cut(s)	154, 440
PfeI	GAWTC	1 cut(s)	122
PflMI	CCANNNNNTGG	1 cut(s)	238
PfoI	TCCNGGA	1 cut(s)	366
PkrI	GCNGC	3 cut(s)	378, 678, 681
PleI	GAGTC	4 cut(s)	208, 394, 400, 512
PmeI	GTTTAAAC	1 cut(s)	613
PpsI	GAGTC	4 cut(s)	208, 394, 400, 512
PpuMI	RGGWCCY	2 cut(s)	130, 276
Psp124BI	GAGCTC	1 cut(s)	149
Psp5II	RGGWCCY	2 cut(s)	130, 276
Psp6I	CCWGG	1 cut(s)	366
PspEI	GGTNACC	1 cut(s)	6
PspGI	CCWGG	1 cut(s)	366
PspN4I	GGNNCC	3 cut(s)	200, 448, 581
PspOMI	GGGCCC	1 cut(s)	198
PspPI	GGNCC	5 cut(s)	130, 198, 199, 276, 447
PspPPI	RGGWCCY	2 cut(s)	130, 276
PstI	CTGCAG	1 cut(s)	381
PsuI	RGATCY	1 cut(s)	343
RsaI	GTAC	2 cut(s)	622, 672
RsaNI	GTAC	2 cut(s)	621, 671
SacI	GAGCTC	1 cut(s)	149
SacII	CCGCGG	1 cut(s)	143
SapI	GCTCTTC	2 cut(s)	154, 440
SaqAI	TTAA	1 cut(s)	612
SatI	GCNGC	3 cut(s)	377, 677, 680
Sau3AI	GATC	3 cut(s)	302, 343, 495
Sau96I	GGNCC	5 cut(s)	130, 198, 199, 276, 447
SchI	GAGTC	4 cut(s)	208, 394, 400, 512
ScrFI	CCNGG	2 cut(s)	164, 368
SduI	GDGCHC	6 cut(s)	39, 149, 202, 435, 656, 667
SfcI	CTRYAG	1 cut(s)	377
Sfr303I	CCGCGG	1 cut(s)	143
SgrBI	CCGCGG	1 cut(s)	143
SinI	GGWCC	2 cut(s)	130, 276
Sse9I	AATT	2 cut(s)	482, 689
SsiI	CCGC	8 cut(s)	55, 140, 142, 262, 271, 429, 676, 679
SspMI	CTAG	1 cut(s)	694
SstI	GAGCTC	1 cut(s)	149
StyD4I	CCNGG	2 cut(s)	162, 366
StyI	CCWWGG	1 cut(s)	11
TaaI	ACNGT	2 cut(s)	625, 641
TaiI	ACGT	2 cut(s)	572, 636
TaqI	TCGA	3 cut(s)	282, 333, 498
TasI	AATT	2 cut(s)	482, 689
TauI	GCSGC	2 cut(s)	679, 682
TfiI	GAWTC	1 cut(s)	122
Tru1I	TTAA	1 cut(s)	612
Tru9I	TTAA	1 cut(s)	612
TscAI	CASTG	1 cut(s)	516
TseFI	GTSAC	2 cut(s)	6, 57
TseI	GCWGC	1 cut(s)	376
Tsp45I	GTSAC	2 cut(s)	6, 57
TspDTI	ATGAA	2 cut(s)	412, 427
TspGWI	ACGGA	1 cut(s)	302
TspRI	CASTG	1 cut(s)	516
Van91I	CCANNNNNTGG	1 cut(s)	238
VneI	GTGCAC	1 cut(s)	35
VpaK11BI	GGWCC	2 cut(s)	130, 276
XapI	RAATTY	1 cut(s)	689
XmiI	GTMKAC	1 cut(s)	516
XspI	CTAG	1 cut(s)	694

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.