Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0003557

Physical Location & Seq

Genomic Coordinates Reverse (-)

76653111 .. 76654623

Gene Structure 1513 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000036158

Sequence Viewer

CDS Protein Promoter (2k)

Length: 819 bp

ATGTGGCGGCCGTGGAGCAAATCAACGGTTCAGATTCACGACACGACGACATCGCCGACCTCGCCGTTCTCGTTCTCCTCCTTCAAAGACATCCAGAACCTCTGCGCCGAAGAGCCGCCGCAACCCGCCGCCACCGCCAAGAAAGCCTCGGCGATCTTCCACCGCGTCCGAGTCGCCAACTCACTCCTCCGCGCCTGGTCGACTCGCCCCAAAGATGAGCCCTCCCCTACGACGCAACTCGAGCAGTCGTCCATTTCCCTCCCGGGCGGCGAGAAACGCATTGTCGTTTACTTCACCAGCCTACGTGTCGTGCGGCGCACGTTCGAGGACTGCAAGGCCGTCCGATCAATACTCCGGGGATTCCGTGTGACGTTGGACGAGCGAGATCTGGCGATGGACCACGCCTTCATTACCGAGCTGCAGCAGATTGTTGGTCAAAGAAAGTTGACCCTCCCCCGGGTTTTCATTGGCGGGAGGTACATTGGTGGGGCCGAGGAGGTGAAACAGCTGCACGAGGCTGGCGAGCTCAAGAAGTTTGTGGAAGGCCTGCCCGTACAGGAACCCGGCGCGTGCGACGCGTGCGGCGGATACAGATTTTTACTGTGTGACGTTTGTGACGGCAGTCATAAGTTGTATTCTGAGAAAGGGGGCTTCAGGAGTTGTACCTCGTGCAATGAGAATGGTCTCATCAGATTAGGCAAAGAAGACAGTTGTCAAAGGTCAAGTGTTGATGGGGGAGACAAAGTAACATGGTTGTGCAAAGAGTGTAACATAAGCCTGAGGGGAATAGACAGGGAGCTAATGATCTTATCCTTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glutaredoxin

Protein Analysis

273

Amino Acids

30.38

Weight (kDa)

8.62

Isoelectric Point (pI)

58.6

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glutaredoxin	PF00462	95 - 161	1.5e-11	Glutaredoxin
GRXCR1-2_C	PF23733	191 - 231	2.2e-18	GRXCR1/2, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003557)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G58530
fragaria_vesca	FvH4_3g39350 FvH4_7g24960
malus_domestica	MD01G1157000.v1.1 MD03G1062300.v1.1 MD07G1225800.v1.1 MD11G1065900.v1.1
prunus_persica	Prupe.2G254600_v2.0.a1 Prupe.6G052300_v2.0.a1
pyrus_communis	pycom03g04980 pycom06g13500
rosa_chinensis	RchiOBHm_Chr1g0370851 RchiOBHm_Chr1g0370861 RchiOBHm_Chr5g0070781
rosa_laevigata	RLG00000027004 RLG00000036158
rosa_multiflora	Rmu_sc0002944.1_g000025 Rmu_sc0009474.1_g000015 Rmu_sc0009474.1_g000016
rosa_roxburghii	Rroxscaffold_1G00010370 Rroxscaffold_4G00286180 Rroxscaffold_4G00286190
rosa_rugosa	Rorug01G0360000 Rorug05G0408500
rosa_samantha	Rh1AG369600 Rh1BG333100 Rh1CG346600 Rh1DG364300 Rh5AG463900 Rh5BG481700 Rh5CG506200 Rh5DG494600
rosa_wichuraiana	Rw1G032530 Rw1G032540 Rw5G043180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	200
AccII	CGCG	4 cut(s)	165, 192, 569, 578
AcoI	YGGCCR	1 cut(s)	8
AcuI	CTGAAG	1 cut(s)	637
AfaI	GTAC	3 cut(s)	479, 555, 664
AfiI	CCNNNNNNNGG	2 cut(s)	456, 457
AflIII	ACRYGT	2 cut(s)	304, 576
AgsI	TTSAA	1 cut(s)	85
AjnI	CCWGG	1 cut(s)	194
AluBI	AGCT	4 cut(s)	418, 508, 526, 799
AluI	AGCT	4 cut(s)	418, 508, 526, 799
Alw21I	GWGCWC	1 cut(s)	528
Alw26I	GTCTC	2 cut(s)	689, 732
Ama87I	CYCGRG	3 cut(s)	239, 262, 456
AoxI	GGCC	4 cut(s)	8, 336, 489, 544
ApeKI	GCWGC	3 cut(s)	418, 421, 508
AspLEI	GCGC	4 cut(s)	107, 194, 318, 569
AspS9I	GGNCC	2 cut(s)	397, 489
AsuC2I	CCSGG	6 cut(s)	263, 264, 356, 457, 458, 564
AsuHPI	GGTGA	2 cut(s)	286, 511
AvaI	CYCGRG	3 cut(s)	239, 262, 456
AvaII	GGWCC	1 cut(s)	397
AxyI	CCTNAGG	1 cut(s)	779
BaeI	ACNNNNGTAYC	2 cut(s)	469, 502
BanII	GRGCYC	2 cut(s)	222, 528
BauI	CACGAG	2 cut(s)	512, 667
BbsI	GAAGAC	1 cut(s)	711
Bbv12I	GWGCWC	1 cut(s)	528
BbvI	GCAGC	3 cut(s)	405, 433, 495
BccI	CCATC	2 cut(s)	388, 725
BceAI	ACGGC	3 cut(s)	49, 323, 634
BciT130I	CCWGG	1 cut(s)	196
BciVI	GTATCC	1 cut(s)	581
BcnI	CCSGG	6 cut(s)	263, 264, 356, 457, 458, 564
BcoDI	GTCTC	2 cut(s)	689, 732
BfmI	CTRYAG	1 cut(s)	419
BfuI	GTATCC	1 cut(s)	581
BglII	AGATCT	1 cut(s)	385
Bme1390I	CCNGG	7 cut(s)	196, 263, 264, 356, 457, 458, 564
Bme18I	GGWCC	1 cut(s)	397
BmeT110I	CYCGRG	3 cut(s)	239, 262, 456
BmgT120I	GGNCC	2 cut(s)	397, 489
BmiI	GGNNCC	2 cut(s)	490, 561
BmrFI	CCNGG	7 cut(s)	196, 263, 264, 356, 457, 458, 564
BoxI	GACNNNNGTC	2 cut(s)	621, 711
BpiI	GAAGAC	1 cut(s)	711
BpuEI	CTTGAG	1 cut(s)	512
BpuMI	CCSGG	6 cut(s)	263, 264, 356, 457, 458, 564
BsaAI	YACGTR	1 cut(s)	305
BsaI	GGTCTC	1 cut(s)	689
BsaJI	CCNNGG	7 cut(s)	11, 147, 262, 355, 455, 456, 492
BsaXI	ACNNNNNCTCC	2 cut(s)	729, 759
Bsc4I	CCNNNNNNNGG	2 cut(s)	456, 457
Bse21I	CCTNAGG	1 cut(s)	779
Bse3DI	GCAATG	1 cut(s)	679
BseBI	CCWGG	1 cut(s)	196
BseDI	CCNNGG	7 cut(s)	11, 147, 262, 355, 455, 456, 492
BseGI	GGATG	1 cut(s)	90
BseLI	CCNNNNNNNGG	2 cut(s)	456, 457
BseMI	GCAATG	1 cut(s)	679
BseMII	CTCAG	2 cut(s)	630, 770
BseRI	GAGGAG	3 cut(s)	67, 176, 509
BseX3I	CGGCCG	1 cut(s)	8
BseXI	GCAGC	3 cut(s)	405, 433, 495
BsgI	GTGCAG	1 cut(s)	494
Bsh1236I	CGCG	4 cut(s)	165, 192, 569, 578
Bsh1285I	CGRYCG	1 cut(s)	11
BshFI	GGCC	4 cut(s)	10, 338, 491, 546
BsiEI	CGRYCG	1 cut(s)	11
BsiHKAI	GWGCWC	1 cut(s)	528
BsiHKCI	CYCGRG	3 cut(s)	239, 262, 456
BsiSI	CCGG	4 cut(s)	263, 355, 457, 564
BslI	CCNNNNNNNGG	2 cut(s)	456, 457
BsmAI	GTCTC	2 cut(s)	689, 732
BsnI	GGCC	4 cut(s)	10, 338, 491, 546
Bso31I	GGTCTC	1 cut(s)	689
BsoBI	CYCGRG	3 cut(s)	239, 262, 456
Bsp1286I	GDGCHC	2 cut(s)	222, 528
Bsp143I	GATC	4 cut(s)	153, 344, 385, 804
BspANI	GGCC	4 cut(s)	10, 338, 491, 546
BspCNI	CTCAG	2 cut(s)	631, 771
BspFNI	CGCG	4 cut(s)	165, 192, 569, 578
BspLI	GGNNCC	2 cut(s)	490, 561
BspMAI	CTGCAG	1 cut(s)	423
BspQI	GCTCTTC	1 cut(s)	105
BspTNI	GGTCTC	1 cut(s)	689
BsrDI	GCAATG	1 cut(s)	679
BssECI	CCNNGG	7 cut(s)	11, 147, 262, 355, 455, 456, 492
BssMI	GATC	4 cut(s)	153, 344, 385, 804
BssSI	CACGAG	2 cut(s)	512, 667
Bst2BI	CACGAG	2 cut(s)	512, 667
Bst2UI	CCWGG	1 cut(s)	196
Bst4CI	ACNGT	3 cut(s)	28, 603, 710
Bst6I	CTCTTC	1 cut(s)	105
BstBAI	YACGTR	1 cut(s)	305
BstC8I	GCNNGC	5 cut(s)	520, 524, 548, 571, 580
BstDEI	CTNAG	2 cut(s)	639, 779
BstDSI	CCRYGG	1 cut(s)	11
BstF5I	GGATG	1 cut(s)	90
BstFNI	CGCG	4 cut(s)	165, 192, 569, 578
BstHHI	GCGC	4 cut(s)	107, 194, 318, 569
BstKTI	GATC	4 cut(s)	156, 347, 388, 807
BstMAI	GTCTC	2 cut(s)	689, 732
BstMBI	GATC	4 cut(s)	153, 344, 385, 804
BstMCI	CGRYCG	1 cut(s)	11
BstMWI	GCNNNNNNNGC	7 cut(s)	61, 134, 143, 241, 276, 575, 579
BstNI	CCWGG	1 cut(s)	196
BstPAI	GACNNNNGTC	2 cut(s)	621, 711
BstSCI	CCNGG	7 cut(s)	194, 261, 262, 354, 455, 456, 562
BstSFI	CTRYAG	1 cut(s)	419
BstUI	CGCG	4 cut(s)	165, 192, 569, 578
BstV1I	GCAGC	3 cut(s)	405, 433, 495
BstV2I	GAAGAC	1 cut(s)	711
BstX2I	RGATCY	1 cut(s)	385
BstYI	RGATCY	1 cut(s)	385
BstZI	CGGCCG	1 cut(s)	8
Bsu36I	CCTNAGG	1 cut(s)	779
BsuI	GTATCC	1 cut(s)	581
BsuRI	GGCC	4 cut(s)	10, 338, 491, 546
BtgI	CCRYGG	1 cut(s)	11
BtgZI	GCGATG	2 cut(s)	36, 407
BtsCI	GGATG	1 cut(s)	90
Cac8I	GCNNGC	5 cut(s)	520, 524, 548, 571, 580
CfoI	GCGC	4 cut(s)	107, 194, 318, 569
Cfr13I	GGNCC	2 cut(s)	397, 489
Cfr9I	CCCGGG	2 cut(s)	262, 456
CseI	GACGC	3 cut(s)	154, 241, 584
Csp6I	GTAC	3 cut(s)	478, 554, 663
CviAII	CATG	1 cut(s)	750
CviQI	GTAC	3 cut(s)	478, 554, 663
DdeI	CTNAG	2 cut(s)	639, 779
DpnI	GATC	4 cut(s)	155, 346, 387, 806
DpnII	GATC	4 cut(s)	153, 344, 385, 804
EaeI	YGGCCR	1 cut(s)	8
EagI	CGGCCG	1 cut(s)	8
Eam1104I	CTCTTC	1 cut(s)	105
EarI	CTCTTC	1 cut(s)	105
EciI	GGCGGA	1 cut(s)	600
Ecl136II	GAGCTC	1 cut(s)	526
EclXI	CGGCCG	1 cut(s)	8
Eco147I	AGGCCT	1 cut(s)	546
Eco24I	GRGCYC	2 cut(s)	222, 528
Eco31I	GGTCTC	1 cut(s)	689
Eco47I	GGWCC	1 cut(s)	397
Eco52I	CGGCCG	1 cut(s)	8
Eco53kI	GAGCTC	1 cut(s)	526
Eco57I	CTGAAG	1 cut(s)	637
Eco81I	CCTNAGG	1 cut(s)	779
Eco88I	CYCGRG	3 cut(s)	239, 262, 456
EcoICRI	GAGCTC	1 cut(s)	526
EcoRII	CCWGG	1 cut(s)	194
EcoT38I	GRGCYC	2 cut(s)	222, 528
FaeI	CATG	1 cut(s)	753
FaiI	YATR	3 cut(s)	627, 751, 773
FatI	CATG	1 cut(s)	749
FauI	CCCGC	2 cut(s)	133, 464
FblI	GTMKAC	1 cut(s)	200
FokI	GGATG	1 cut(s)	77
FriOI	GRGCYC	2 cut(s)	222, 528
GlaI	GCGC	4 cut(s)	106, 193, 317, 568
HaeIII	GGCC	4 cut(s)	10, 338, 491, 546
HapII	CCGG	4 cut(s)	263, 355, 457, 564
HgaI	GACGC	3 cut(s)	154, 241, 584
HhaI	GCGC	4 cut(s)	107, 194, 318, 569
Hin1II	CATG	1 cut(s)	753
Hin6I	GCGC	4 cut(s)	105, 192, 316, 567
HinP1I	GCGC	4 cut(s)	105, 192, 316, 567
HincII	GTYRAC	2 cut(s)	201, 447
HindII	GTYRAC	2 cut(s)	201, 447
HinfI	GANTC	4 cut(s)	34, 171, 202, 360
HpaII	CCGG	4 cut(s)	263, 355, 457, 564
HphI	GGTGA	2 cut(s)	286, 511
Hpy166II	GTNNAC	3 cut(s)	201, 289, 447
Hpy188I	TCNGA	5 cut(s)	33, 170, 344, 640, 692
Hpy188III	TCNNGA	4 cut(s)	38, 94, 529, 655
Hpy8I	GTNNAC	3 cut(s)	201, 289, 447
Hpy99I	CGWCG	3 cut(s)	49, 235, 578
HpyAV	CCTTC	3 cut(s)	91, 415, 536
HpyCH4III	ACNGT	3 cut(s)	28, 603, 710
HpyCH4IV	ACGT	4 cut(s)	304, 320, 371, 609
HpyCH4V	TGCA	5 cut(s)	333, 421, 511, 672, 759
HpyF10VI	GCNNNNNNNGC	7 cut(s)	61, 134, 143, 241, 276, 575, 579
HpyF3I	CTNAG	2 cut(s)	639, 779
HpySE526I	ACGT	4 cut(s)	304, 320, 371, 609
Hsp92II	CATG	1 cut(s)	753
HspAI	GCGC	4 cut(s)	105, 192, 316, 567
Kzo9I	GATC	4 cut(s)	153, 344, 385, 804
LguI	GCTCTTC	1 cut(s)	105
LmnI	GCTCC	2 cut(s)	15, 796
Lsp1109I	GCAGC	3 cut(s)	405, 433, 495
MaeII	ACGT	4 cut(s)	304, 320, 371, 609
MaeIII	GTNAC	5 cut(s)	367, 605, 614, 745, 767
MalI	GATC	4 cut(s)	155, 346, 387, 806
MboI	GATC	4 cut(s)	153, 344, 385, 804
MboII	GAAGA	3 cut(s)	122, 148, 716
MflI	RGATCY	1 cut(s)	385
MhlI	GDGCHC	2 cut(s)	222, 528
MluI	ACGCGT	1 cut(s)	576
MlyI	GAGTC	2 cut(s)	180, 196
MmeI	TCCRAC	1 cut(s)	354
MslI	CAYNNNNRTG	1 cut(s)	754
MspA1I	CMGCKG	1 cut(s)	508
MspI	CCGG	4 cut(s)	263, 355, 457, 564
MspR9I	CCNGG	7 cut(s)	196, 263, 264, 356, 457, 458, 564
MvaI	CCWGG	1 cut(s)	196
MvnI	CGCG	4 cut(s)	165, 192, 569, 578
MwoI	GCNNNNNNNGC	7 cut(s)	61, 134, 143, 241, 276, 575, 579
NciI	CCSGG	6 cut(s)	263, 264, 356, 457, 458, 564
NdeII	GATC	4 cut(s)	153, 344, 385, 804
NlaIII	CATG	1 cut(s)	753
NlaIV	GGNNCC	2 cut(s)	490, 561
NmeAIII	GCCGAG	2 cut(s)	128, 517
NmuCI	GTSAC	3 cut(s)	367, 605, 614
PaeR7I	CTCGAG	1 cut(s)	239
PceI	AGGCCT	1 cut(s)	546
PciSI	GCTCTTC	1 cut(s)	105
PcsI	WCGNNNNNNNCGW	3 cut(s)	53, 68, 519
PfeI	GAWTC	2 cut(s)	34, 360
PleI	GAGTC	2 cut(s)	179, 196
PpsI	GAGTC	2 cut(s)	179, 196
Ppu21I	YACGTR	1 cut(s)	305
PshAI	GACNNNNGTC	2 cut(s)	621, 711
Psp124BI	GAGCTC	1 cut(s)	528
Psp6I	CCWGG	1 cut(s)	194
PspGI	CCWGG	1 cut(s)	194
PspN4I	GGNNCC	2 cut(s)	490, 561
PspPI	GGNCC	2 cut(s)	397, 489
PspXI	VCTCGAGB	1 cut(s)	239
PstI	CTGCAG	1 cut(s)	423
PsuI	RGATCY	1 cut(s)	385
PvuII	CAGCTG	1 cut(s)	508
RsaI	GTAC	3 cut(s)	479, 555, 664
RsaNI	GTAC	3 cut(s)	478, 554, 663
RseI	CAYNNNNRTG	1 cut(s)	754
SacI	GAGCTC	1 cut(s)	528
SalI	GTCGAC	1 cut(s)	199
SapI	GCTCTTC	1 cut(s)	105
Sau3AI	GATC	4 cut(s)	153, 344, 385, 804
Sau96I	GGNCC	2 cut(s)	397, 489
SchI	GAGTC	2 cut(s)	180, 196
ScrFI	CCNGG	7 cut(s)	196, 263, 264, 356, 457, 458, 564
SduI	GDGCHC	2 cut(s)	222, 528
SfcI	CTRYAG	1 cut(s)	419
Sfr274I	CTCGAG	1 cut(s)	239
SinI	GGWCC	1 cut(s)	397
SlaI	CTCGAG	1 cut(s)	239
SmaI	CCCGGG	2 cut(s)	264, 458
SmiMI	CAYNNNNRTG	1 cut(s)	754
SmlI	CTYRAG	2 cut(s)	239, 527
SmoI	CTYRAG	2 cut(s)	239, 527
SseBI	AGGCCT	1 cut(s)	546
SstI	GAGCTC	1 cut(s)	528
StuI	AGGCCT	1 cut(s)	546
StyD4I	CCNGG	7 cut(s)	194, 261, 262, 354, 455, 456, 562
TaaI	ACNGT	3 cut(s)	28, 603, 710
TaiI	ACGT	4 cut(s)	307, 323, 374, 612
TaqI	TCGA	3 cut(s)	200, 240, 324
TauI	GCSGC	7 cut(s)	10, 118, 121, 131, 270, 316, 585
TfiI	GAWTC	2 cut(s)	34, 360
TseFI	GTSAC	3 cut(s)	367, 605, 614
TseI	GCWGC	3 cut(s)	418, 421, 508
Tsp45I	GTSAC	3 cut(s)	367, 605, 614
TspDTI	ATGAA	2 cut(s)	397, 454
TspGWI	ACGGA	1 cut(s)	353
TspMI	CCCGGG	2 cut(s)	262, 456
VpaK11BI	GGWCC	1 cut(s)	397
XhoI	CTCGAG	1 cut(s)	239
XmaI	CCCGGG	2 cut(s)	262, 456
XmiI	GTMKAC	1 cut(s)	200

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.