Rh1DG364300

At5g39865-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0003557
Physical Location & Seq
Reverse (-)
59044134 .. 59044819
686 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG364300.1

Sequence Viewer

Length: 330 bp
ATGGACTCCAAGTTTGTGCAGGAGCTGGAGGAGGTCACTGGGAGCAAGGACTTGAACTTGCCCATGGTTTTCGTCAGCGGAGACTACATTGGTGGCGCCGAGGATGTGAGGCAGCTCCATGAAAGCGGAGAGCTAAAGACAATGCTCCAAGGGCTCCCGGTGGTGGAGTCCAAAACTTGTGATGTGTGCGGAGGGCTGAGATTTATTCTCTGCCAGACTTGCAACGGAAGCCACAAACTCTACAGACAGAAAGATGGGTTTTGCCCTTGTATAGACTGCAACATGAATGGCATGATTACGTGCCCTTCATGTTCAACTGCGGGACAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Glutaredoxin

Protein Analysis

109

Amino Acids

11.86

Weight (kDa)

4.82

Isoelectric Point (pI)

40.62

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GRXCR1-2_C PF23733 60 - 105 9.1e-17 GRXCR1/2, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 95
AciI CCGC 4 cut(s) 78, 126, 189, 320
AcyI GRCGYC 1 cut(s) 96
AfiI CCNNNNNNNGG 1 cut(s) 163
AgsI TTSAA 2 cut(s) 55, 315
AluBI AGCT 3 cut(s) 25, 115, 133
AluI AGCT 3 cut(s) 25, 115, 133
Alw26I GTCTC 1 cut(s) 75
AlwNI CAGNNNCTG 1 cut(s) 25
ApeKI GCWGC 1 cut(s) 112
ArsI GACNNNNNNTTYG 1 cut(s) 28
AspLEI GCGC 1 cut(s) 98
AsuC2I CCSGG 1 cut(s) 158
BaeGI GKGCMC 1 cut(s) 305
BanI GGYRCC 1 cut(s) 95
BanII GRGCYC 1 cut(s) 156
BbvI GCAGC 1 cut(s) 124
BccI CCATC 1 cut(s) 248
BcnI CCSGG 1 cut(s) 158
BcoDI GTCTC 1 cut(s) 75
BfmI CTRYAG 1 cut(s) 241
BfoI RGCGCY 1 cut(s) 99
BisI GCNGC 1 cut(s) 113
BlsI GCNGC 1 cut(s) 114
Bme1390I CCNGG 1 cut(s) 158
BmiI GGNNCC 2 cut(s) 97, 155
BmrFI CCNGG 1 cut(s) 158
BmrI ACTGGG 1 cut(s) 48
BmuI ACTGGG 1 cut(s) 48
BpmI CTGGAG 1 cut(s) 47
BpuMI CCSGG 1 cut(s) 158
BsaAI YACGTR 1 cut(s) 300
BsaHI GRCGYC 1 cut(s) 96
BsaJI CCNNGG 3 cut(s) 63, 99, 148
Bsc4I CCNNNNNNNGG 1 cut(s) 163
Bse1I ACTGG 1 cut(s) 43
BseDI CCNNGG 3 cut(s) 63, 99, 148
BseGI GGATG 1 cut(s) 109
BseLI CCNNNNNNNGG 1 cut(s) 163
BseMII CTCAG 1 cut(s) 188
BseNI ACTGG 1 cut(s) 43
BseRI GAGGAG 1 cut(s) 44
BseSI GKGCMC 1 cut(s) 305
BseXI GCAGC 1 cut(s) 124
BsgI GTGCAG 1 cut(s) 38
BshNI GGYRCC 1 cut(s) 95
BsiSI CCGG 1 cut(s) 158
BslI CCNNNNNNNGG 1 cut(s) 163
BsmAI GTCTC 1 cut(s) 75
Bsp1286I GDGCHC 2 cut(s) 156, 305
Bsp19I CCATGG 1 cut(s) 63
BspACI CCGC 4 cut(s) 78, 126, 189, 320
BspCNI CTCAG 1 cut(s) 189
BspLI GGNNCC 2 cut(s) 97, 155
BspT107I GGYRCC 1 cut(s) 95
BsrI ACTGG 1 cut(s) 43
BssECI CCNNGG 3 cut(s) 63, 99, 148
BssNI GRCGYC 1 cut(s) 96
BssT1I CCWWGG 2 cut(s) 63, 148
Bst4CI ACNGT 1 cut(s) 327
BstACI GRCGYC 1 cut(s) 96
BstBAI YACGTR 1 cut(s) 300
BstDEI CTNAG 1 cut(s) 197
BstDSI CCRYGG 1 cut(s) 63
BstF5I GGATG 1 cut(s) 109
BstH2I RGCGCY 1 cut(s) 99
BstHHI GCGC 1 cut(s) 98
BstMAI GTCTC 1 cut(s) 75
BstMWI GCNNNNNNNGC 3 cut(s) 151, 219, 228
BstSCI CCNGG 1 cut(s) 156
BstSFI CTRYAG 1 cut(s) 241
BstSLI GKGCMC 1 cut(s) 305
BstV1I GCAGC 1 cut(s) 124
BtgI CCRYGG 1 cut(s) 63
BtsCI GGATG 1 cut(s) 109
BtsIMutI CAGTG 1 cut(s) 36
CaiI CAGNNNCTG 1 cut(s) 25
CfoI GCGC 1 cut(s) 98
CviAII CATG 5 cut(s) 64, 119, 283, 292, 309
CviJI RGCY 6 cut(s) 25, 115, 133, 154, 196, 231
CviKI_1 RGCY 6 cut(s) 25, 115, 133, 154, 196, 231
DdeI CTNAG 1 cut(s) 197
DinI GGCGCC 1 cut(s) 97
Eco130I CCWWGG 2 cut(s) 63, 148
Eco24I GRGCYC 1 cut(s) 156
EcoT14I CCWWGG 2 cut(s) 63, 148
EcoT38I GRGCYC 1 cut(s) 156
EgeI GGCGCC 1 cut(s) 97
EheI GGCGCC 1 cut(s) 97
ErhI CCWWGG 2 cut(s) 63, 148
FaeI CATG 5 cut(s) 67, 122, 286, 295, 312
FaiI YATR 6 cut(s) 65, 120, 272, 284, 293, 310
FatI CATG 5 cut(s) 63, 118, 282, 291, 308
FauI CCCGC 1 cut(s) 313
Fnu4HI GCNGC 1 cut(s) 113
FokI GGATG 1 cut(s) 116
FriOI GRGCYC 1 cut(s) 156
Fsp4HI GCNGC 1 cut(s) 113
GlaI GCGC 1 cut(s) 97
GluI GCNGC 1 cut(s) 113
GsuI CTGGAG 1 cut(s) 47
HaeII RGCGCY 1 cut(s) 99
HapII CCGG 1 cut(s) 158
HhaI GCGC 1 cut(s) 98
Hin1I GRCGYC 1 cut(s) 96
Hin1II CATG 5 cut(s) 67, 122, 286, 295, 312
Hin6I GCGC 1 cut(s) 96
HinP1I GCGC 1 cut(s) 96
HinfI GANTC 2 cut(s) 5, 167
HpaII CCGG 1 cut(s) 158
HpyAV CCTTC 1 cut(s) 315
HpyCH4III ACNGT 1 cut(s) 327
HpyCH4IV ACGT 1 cut(s) 299
HpyCH4V TGCA 3 cut(s) 19, 222, 279
HpyF10VI GCNNNNNNNGC 3 cut(s) 151, 219, 228
HpyF3I CTNAG 1 cut(s) 197
HpySE526I ACGT 1 cut(s) 299
Hsp92I GRCGYC 1 cut(s) 96
Hsp92II CATG 5 cut(s) 67, 122, 286, 295, 312
HspAI GCGC 1 cut(s) 96
KasI GGCGCC 1 cut(s) 95
LmnI GCTCC 5 cut(s) 22, 42, 120, 150, 159
LpnPI CCDG 5 cut(s) 5, 11, 24, 171, 227
Lsp1109I GCAGC 1 cut(s) 124
MaeII ACGT 1 cut(s) 299
MaeIII GTNAC 1 cut(s) 34
MhlI GDGCHC 2 cut(s) 156, 305
Mly113I GGCGCC 1 cut(s) 96
MlyI GAGTC 1 cut(s) 176
MnlI CCTC 5 cut(s) 22, 25, 94, 102, 185
MspA1I CMGCKG 1 cut(s) 78
MspI CCGG 1 cut(s) 158
MspR9I CCNGG 1 cut(s) 158
MwoI GCNNNNNNNGC 3 cut(s) 151, 219, 228
NarI GGCGCC 1 cut(s) 96
NciI CCSGG 1 cut(s) 158
NcoI CCATGG 1 cut(s) 63
NlaIII CATG 5 cut(s) 67, 122, 286, 295, 312
NlaIV GGNNCC 2 cut(s) 97, 155
NmeAIII GCCGAG 1 cut(s) 124
NmuCI GTSAC 1 cut(s) 34
PkrI GCNGC 1 cut(s) 114
PleI GAGTC 1 cut(s) 175
PluTI GGCGCC 1 cut(s) 99
PpsI GAGTC 1 cut(s) 175
Ppu21I YACGTR 1 cut(s) 300
PspN4I GGNNCC 2 cut(s) 97, 155
PstNI CAGNNNCTG 1 cut(s) 25
SatI GCNGC 1 cut(s) 113
SchI GAGTC 1 cut(s) 176
ScrFI CCNGG 1 cut(s) 158
SduI GDGCHC 2 cut(s) 156, 305
SetI ASST 5 cut(s) 27, 36, 117, 135, 302
SfcI CTRYAG 1 cut(s) 241
SfoI GGCGCC 1 cut(s) 97
SsiI CCGC 4 cut(s) 78, 126, 189, 320
SspDI GGCGCC 1 cut(s) 95
StyD4I CCNGG 1 cut(s) 156
StyI CCWWGG 2 cut(s) 63, 148
TaaI ACNGT 1 cut(s) 327
TaiI ACGT 1 cut(s) 302
TscAI CASTG 1 cut(s) 43
TseFI GTSAC 1 cut(s) 34
TseI GCWGC 1 cut(s) 112
Tsp45I GTSAC 1 cut(s) 34
TspDTI ATGAA 3 cut(s) 135, 297, 299
TspGWI ACGGA 1 cut(s) 240
TspRI CASTG 1 cut(s) 43
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.