MD11G1065900.v1.1

Glutaredoxin

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr11
OG0003557
Physical Location & Seq
Forward (+)
5677634 .. 5678401
768 bp
Loading structure...
UTR
Exon/CDS
Intron
MD11G1065900.v1.1.491

Sequence Viewer

Length: 768 bp
ATGTGGCGGTCGTGGAGCAAATCAACGGTTCAGATTCACGACACGCAATCCCCATCCTCCCCCTTCTCCTTCTCCTCCTTCAAAGACATCCAAAACCTCTGCGCGGACGAAACCAACGACCACTCTCTACAACCGACAACCGCCGCCGCCACCAAAAAAGCCTCCGCTATTTTCCACCGCGTCCGGGTCGCCAACTCCCTCCTCCGCGCCTGGTCAACTCGCCCATCCACCCAGCCCCAGCCCAAACCCCAACCAGACGATGGAATCTCCACAAAACAATCTGAGCCGTCCATCAGCTCCATCCCGGGGGCGGAGAAGCGCATTGTCGTTTACTTCACGAGCCTACGTATCGTGCGGCCTACGTTCGAGGACTGTAAGACCGTCCGATCGATTCTCCGAGGGTTTCGCGTATCATTGGACGAACGAGATCTAGCGATGGACCACCGGTTCTTAACCGAGCTGCAGCAGATTCTCGGTCAACAAACTAAGTTGACATTACCGAGGGTTTTCATTGGGGGGAGGTACGTAGGTGGGGCCGACGAGGTGAGAAATTTGCATGAGGCCGGCGAGCTCAAGAAGTTCGTGGAAGGCTTGCCCGCACAGGAACCGGGGGTATGCGACACGTGCGGCGGGTACAGATTTATTCTGTGCGACGTGTGTAGCGGCAGTCACAAGTTGTACTCTGAGAAGAACGGCTTCAAGAGTTGTACGTCGTGCAACGAAAACGGTCTCATCAGGTGCCCTTCTTGTTCGTGTGCGCCACTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Glutaredoxin

Protein Analysis

256

Amino Acids

28.29

Weight (kDa)

8.76

Isoelectric Point (pI)

52.39

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glutaredoxin PF00462 109 - 176 9.7e-12 Glutaredoxin
GRXCR1-2_C PF23733 206 - 251 9.6e-20 GRXCR1/2, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 738
AccB7I CCANNNNNTGG 1 cut(s) 260
AccII CGCG 4 cut(s) 104, 180, 207, 408
AcsI RAATTY 1 cut(s) 550
AcvI CACGTG 1 cut(s) 624
AfaI GTAC 4 cut(s) 524, 635, 680, 709
AfiI CCNNNNNNNGG 5 cut(s) 103, 184, 260, 306, 310
AflIII ACRYGT 2 cut(s) 621, 654
AgeI ACCGGT 1 cut(s) 444
AgsI TTSAA 2 cut(s) 82, 700
AjiI CACGTC 1 cut(s) 655
AjnI CCWGG 1 cut(s) 209
AloI GAACNNNNNNTCC 2 cut(s) 431, 463
AluBI AGCT 3 cut(s) 297, 460, 571
AluI AGCT 3 cut(s) 297, 460, 571
Alw21I GWGCWC 1 cut(s) 573
Alw26I GTCTC 1 cut(s) 734
Ama87I CYCGRG 1 cut(s) 304
AoxI GGCC 3 cut(s) 356, 534, 561
ApeKI GCWGC 2 cut(s) 460, 463
ApoI RAATTY 1 cut(s) 550
AsiGI ACCGGT 1 cut(s) 444
Asp700I GAANNNNTTC 1 cut(s) 695
AspLEI GCGC 4 cut(s) 104, 209, 321, 760
AspS9I GGNCC 2 cut(s) 439, 534
AsuC2I CCSGG 4 cut(s) 185, 305, 306, 609
AsuHPI GGTGA 1 cut(s) 556
AvaI CYCGRG 1 cut(s) 304
AvaII GGWCC 1 cut(s) 439
BaeGI GKGCMC 1 cut(s) 743
BaeI ACNNNNGTAYC 2 cut(s) 514, 547
BanI GGYRCC 1 cut(s) 738
BanII GRGCYC 1 cut(s) 573
BauI CACGAG 1 cut(s) 337
BbrPI CACGTG 1 cut(s) 624
Bbv12I GWGCWC 1 cut(s) 573
BbvI GCAGC 2 cut(s) 447, 475
BccI CCATC 6 cut(s) 61, 232, 254, 299, 308, 430
BceAI ACGGC 2 cut(s) 271, 709
BciT130I CCWGG 1 cut(s) 211
BcnI CCSGG 4 cut(s) 185, 305, 306, 609
BcoDI GTCTC 1 cut(s) 734
BfaI CTAG 1 cut(s) 431
BfmI CTRYAG 1 cut(s) 461
BglII AGATCT 1 cut(s) 427
BisI GCNGC 7 cut(s) 144, 147, 356, 461, 464, 628, 664
BlsI GCNGC 7 cut(s) 145, 148, 357, 462, 465, 629, 665
Bme1390I CCNGG 5 cut(s) 185, 211, 305, 306, 609
Bme18I GGWCC 1 cut(s) 439
BmeT110I CYCGRG 1 cut(s) 304
BmgBI CACGTC 1 cut(s) 655
BmgT120I GGNCC 2 cut(s) 439, 534
BmiI GGNNCC 3 cut(s) 535, 606, 740
BmrFI CCNGG 5 cut(s) 185, 211, 305, 306, 609
BpuEI CTTGAG 1 cut(s) 557
BpuMI CCSGG 4 cut(s) 185, 305, 306, 609
Bsa29I ATCGAT 1 cut(s) 389
BsaAI YACGTR 3 cut(s) 347, 526, 624
BsaI GGTCTC 1 cut(s) 734
BsaJI CCNNGG 5 cut(s) 304, 305, 397, 500, 608
BsaWI WCCGGW 1 cut(s) 444
Bsc4I CCNNNNNNNGG 5 cut(s) 103, 184, 260, 306, 310
Bse118I RCCGGY 2 cut(s) 444, 563
BseBI CCWGG 1 cut(s) 211
BseCI ATCGAT 1 cut(s) 389
BseDI CCNNGG 5 cut(s) 304, 305, 397, 500, 608
BseGI GGATG 4 cut(s) 53, 87, 224, 300
BseLI CCNNNNNNNGG 5 cut(s) 103, 184, 260, 306, 310
BseMII CTCAG 2 cut(s) 273, 675
BseRI GAGGAG 2 cut(s) 64, 191
BseSI GKGCMC 1 cut(s) 743
BseXI GCAGC 2 cut(s) 447, 475
BseYI CCCAGC 2 cut(s) 231, 237
Bsh1236I CGCG 4 cut(s) 104, 180, 207, 408
Bsh1285I CGRYCG 2 cut(s) 11, 389
BshFI GGCC 3 cut(s) 358, 536, 563
BshNI GGYRCC 1 cut(s) 738
BshTI ACCGGT 1 cut(s) 444
BshVI ATCGAT 1 cut(s) 389
BsiEI CGRYCG 2 cut(s) 11, 389
BsiHKAI GWGCWC 1 cut(s) 573
BsiHKCI CYCGRG 1 cut(s) 304
BsiSI CCGG 5 cut(s) 184, 305, 445, 564, 608
BslI CCNNNNNNNGG 5 cut(s) 103, 184, 260, 306, 310
BsmAI GTCTC 1 cut(s) 734
BsnI GGCC 3 cut(s) 358, 536, 563
Bso31I GGTCTC 1 cut(s) 734
BsoBI CYCGRG 1 cut(s) 304
Bsp1286I GDGCHC 2 cut(s) 573, 743
Bsp143I GATC 2 cut(s) 386, 427
BspANI GGCC 3 cut(s) 358, 536, 563
BspCNI CTCAG 2 cut(s) 274, 676
BspDI ATCGAT 1 cut(s) 389
BspFNI CGCG 4 cut(s) 104, 180, 207, 408
BspLI GGNNCC 3 cut(s) 535, 606, 740
BspMAI CTGCAG 1 cut(s) 465
BspT107I GGYRCC 1 cut(s) 738
BspTNI GGTCTC 1 cut(s) 734
BsrFI RCCGGY 2 cut(s) 444, 563
BssAI RCCGGY 2 cut(s) 444, 563
BssECI CCNNGG 5 cut(s) 304, 305, 397, 500, 608
BssMI GATC 2 cut(s) 386, 427
BssSI CACGAG 1 cut(s) 337
Bst2BI CACGAG 1 cut(s) 337
Bst2UI CCWGG 1 cut(s) 211
Bst4CI ACNGT 4 cut(s) 28, 374, 382, 728
BstBAI YACGTR 3 cut(s) 347, 526, 624
BstC8I GCNNGC 4 cut(s) 565, 569, 593, 597
BstDEI CTNAG 3 cut(s) 282, 486, 684
BstF5I GGATG 4 cut(s) 53, 87, 224, 300
BstFNI CGCG 4 cut(s) 104, 180, 207, 408
BstHHI GCGC 4 cut(s) 104, 209, 321, 760
BstKTI GATC 2 cut(s) 389, 430
BstMAI GTCTC 1 cut(s) 734
BstMBI GATC 2 cut(s) 386, 427
BstMCI CGRYCG 2 cut(s) 11, 389
BstMWI GCNNNNNNNGC 1 cut(s) 624
BstNI CCWGG 1 cut(s) 211
BstSCI CCNGG 5 cut(s) 183, 209, 303, 304, 607
BstSFI CTRYAG 1 cut(s) 461
BstSLI GKGCMC 1 cut(s) 743
BstSNI TACGTA 2 cut(s) 347, 526
BstUI CGCG 4 cut(s) 104, 180, 207, 408
BstV1I GCAGC 2 cut(s) 447, 475
BstX2I RGATCY 1 cut(s) 427
BstYI RGATCY 1 cut(s) 427
Bsu15I ATCGAT 1 cut(s) 389
BsuRI GGCC 3 cut(s) 358, 536, 563
BsuTUI ATCGAT 1 cut(s) 389
BtgZI GCGATG 1 cut(s) 449
BtrI CACGTC 1 cut(s) 655
BtsCI GGATG 4 cut(s) 53, 87, 224, 300
Cac8I GCNNGC 4 cut(s) 565, 569, 593, 597
CfoI GCGC 4 cut(s) 104, 209, 321, 760
Cfr10I RCCGGY 2 cut(s) 444, 563
Cfr13I GGNCC 2 cut(s) 439, 534
Cfr9I CCCGGG 1 cut(s) 304
ClaI ATCGAT 1 cut(s) 389
CseI GACGC 1 cut(s) 169
Csp6I GTAC 4 cut(s) 523, 634, 679, 708
CspAI ACCGGT 1 cut(s) 444
CviAII CATG 1 cut(s) 557
CviQI GTAC 4 cut(s) 523, 634, 679, 708
DdeI CTNAG 3 cut(s) 282, 486, 684
DpnI GATC 2 cut(s) 388, 429
DpnII GATC 2 cut(s) 386, 427
EciI GGCGGA 1 cut(s) 326
Ecl136II GAGCTC 1 cut(s) 571
Eco105I TACGTA 2 cut(s) 347, 526
Eco24I GRGCYC 1 cut(s) 573
Eco31I GGTCTC 1 cut(s) 734
Eco47I GGWCC 1 cut(s) 439
Eco53kI GAGCTC 1 cut(s) 571
Eco72I CACGTG 1 cut(s) 624
Eco88I CYCGRG 1 cut(s) 304
EcoICRI GAGCTC 1 cut(s) 571
EcoRII CCWGG 1 cut(s) 209
EcoT38I GRGCYC 1 cut(s) 573
FaeI CATG 1 cut(s) 560
FaiI YATR 2 cut(s) 558, 616
FalI AAGNNNNNCTT 2 cut(s) 680, 712
FatI CATG 1 cut(s) 556
FauI CCCGC 2 cut(s) 604, 623
Fnu4HI GCNGC 7 cut(s) 144, 147, 356, 461, 464, 628, 664
FokI GGATG 4 cut(s) 40, 74, 211, 287
FriOI GRGCYC 1 cut(s) 573
Fsp4HI GCNGC 7 cut(s) 144, 147, 356, 461, 464, 628, 664
FspBI CTAG 1 cut(s) 431
GlaI GCGC 4 cut(s) 103, 208, 320, 759
GluI GCNGC 7 cut(s) 144, 147, 356, 461, 464, 628, 664
GsaI CCCAGC 2 cut(s) 235, 241
HaeIII GGCC 3 cut(s) 358, 536, 563
HapII CCGG 5 cut(s) 184, 305, 445, 564, 608
HgaI GACGC 1 cut(s) 169
HhaI GCGC 4 cut(s) 104, 209, 321, 760
Hin1II CATG 1 cut(s) 560
Hin6I GCGC 4 cut(s) 102, 207, 319, 758
HinP1I GCGC 4 cut(s) 102, 207, 319, 758
HincII GTYRAC 3 cut(s) 216, 479, 492
HindII GTYRAC 3 cut(s) 216, 479, 492
HinfI GANTC 4 cut(s) 34, 264, 391, 469
HpaII CCGG 5 cut(s) 184, 305, 445, 564, 608
HphI GGTGA 1 cut(s) 556
Hpy166II GTNNAC 4 cut(s) 216, 331, 479, 492
Hpy188I TCNGA 5 cut(s) 33, 283, 386, 398, 685
Hpy188III TCNNGA 4 cut(s) 38, 337, 574, 700
Hpy8I GTNNAC 4 cut(s) 216, 331, 479, 492
Hpy99I CGWCG 3 cut(s) 542, 656, 715
HpyAV CCTTC 5 cut(s) 73, 79, 88, 581, 753
HpyCH4III ACNGT 4 cut(s) 28, 374, 382, 728
HpyCH4IV ACGT 6 cut(s) 346, 362, 525, 623, 654, 710
HpyCH4V TGCA 3 cut(s) 463, 556, 717
HpyF10VI GCNNNNNNNGC 1 cut(s) 624
HpyF3I CTNAG 3 cut(s) 282, 486, 684
HpySE526I ACGT 6 cut(s) 346, 362, 525, 623, 654, 710
Hsp92II CATG 1 cut(s) 560
HspAI GCGC 4 cut(s) 102, 207, 319, 758
KroI GCCGGC 1 cut(s) 563
KroNI GCCGGC 1 cut(s) 565
Kzo9I GATC 2 cut(s) 386, 427
LmnI GCTCC 2 cut(s) 15, 302
Lsp1109I GCAGC 2 cut(s) 447, 475
MaeI CTAG 1 cut(s) 431
MaeII ACGT 6 cut(s) 346, 362, 525, 623, 654, 710
MaeIII GTNAC 1 cut(s) 668
MalI GATC 2 cut(s) 388, 429
MboI GATC 2 cut(s) 386, 427
MboII GAAGA 1 cut(s) 700
MflI RGATCY 1 cut(s) 427
MhlI GDGCHC 2 cut(s) 573, 743
MluCI AATT 1 cut(s) 550
MroNI GCCGGC 1 cut(s) 563
MroXI GAANNNNTTC 1 cut(s) 695
MseI TTAA 1 cut(s) 452
MspI CCGG 5 cut(s) 184, 305, 445, 564, 608
MspR9I CCNGG 5 cut(s) 185, 211, 305, 306, 609
MvaI CCWGG 1 cut(s) 211
MvnI CGCG 4 cut(s) 104, 180, 207, 408
MwoI GCNNNNNNNGC 1 cut(s) 624
NaeI GCCGGC 1 cut(s) 565
NciI CCSGG 4 cut(s) 185, 305, 306, 609
NdeII GATC 2 cut(s) 386, 427
NgoMIV GCCGGC 1 cut(s) 563
NlaIII CATG 1 cut(s) 560
NlaIV GGNNCC 3 cut(s) 535, 606, 740
NmuCI GTSAC 1 cut(s) 668
PcsI WCGNNNNNNNCGW 1 cut(s) 114
PdiI GCCGGC 1 cut(s) 565
PdmI GAANNNNTTC 1 cut(s) 695
PfeI GAWTC 4 cut(s) 34, 264, 391, 469
PflMI CCANNNNNTGG 1 cut(s) 260
PinAI ACCGGT 1 cut(s) 444
PkrI GCNGC 7 cut(s) 145, 148, 357, 462, 465, 629, 665
Ple19I CGATCG 1 cut(s) 389
PmaCI CACGTG 1 cut(s) 624
PmlI CACGTG 1 cut(s) 624
Ppu21I YACGTR 3 cut(s) 347, 526, 624
Psp124BI GAGCTC 1 cut(s) 573
Psp6I CCWGG 1 cut(s) 209
PspCI CACGTG 1 cut(s) 624
PspFI CCCAGC 2 cut(s) 231, 237
PspGI CCWGG 1 cut(s) 209
PspN4I GGNNCC 3 cut(s) 535, 606, 740
PspPI GGNCC 2 cut(s) 439, 534
PstI CTGCAG 1 cut(s) 465
PsuI RGATCY 1 cut(s) 427
PvuI CGATCG 1 cut(s) 389
RsaI GTAC 4 cut(s) 524, 635, 680, 709
RsaNI GTAC 4 cut(s) 523, 634, 679, 708
SacI GAGCTC 1 cut(s) 573
SaqAI TTAA 1 cut(s) 452
SatI GCNGC 7 cut(s) 144, 147, 356, 461, 464, 628, 664
Sau3AI GATC 2 cut(s) 386, 427
Sau96I GGNCC 2 cut(s) 439, 534
ScrFI CCNGG 5 cut(s) 185, 211, 305, 306, 609
SduI GDGCHC 2 cut(s) 573, 743
SfcI CTRYAG 1 cut(s) 461
SinI GGWCC 1 cut(s) 439
SmaI CCCGGG 1 cut(s) 306
SmlI CTYRAG 1 cut(s) 572
SmoI CTYRAG 1 cut(s) 572
SnaBI TACGTA 2 cut(s) 347, 526
Sse9I AATT 1 cut(s) 550
SspMI CTAG 1 cut(s) 431
SstI GAGCTC 1 cut(s) 573
StyD4I CCNGG 5 cut(s) 183, 209, 303, 304, 607
TaaI ACNGT 4 cut(s) 28, 374, 382, 728
TaiI ACGT 6 cut(s) 349, 365, 528, 626, 657, 713
TaqI TCGA 2 cut(s) 366, 389
TaqII GACCGA 1 cut(s) 464
TasI AATT 1 cut(s) 550
TatI WGTACW 1 cut(s) 678
TauI GCSGC 5 cut(s) 146, 149, 358, 630, 666
TfiI GAWTC 4 cut(s) 34, 264, 391, 469
Tru1I TTAA 1 cut(s) 452
Tru9I TTAA 1 cut(s) 452
TseFI GTSAC 1 cut(s) 668
TseI GCWGC 2 cut(s) 460, 463
Tsp45I GTSAC 1 cut(s) 668
TspDTI ATGAA 1 cut(s) 499
TspMI CCCGGG 1 cut(s) 304
Van91I CCANNNNNTGG 1 cut(s) 260
VpaK11BI GGWCC 1 cut(s) 439
XapI RAATTY 1 cut(s) 550
XcmI CCANNNNNNNNNTGG 1 cut(s) 257
XmaI CCCGGG 1 cut(s) 304
XmnI GAANNNNTTC 1 cut(s) 695
XspI CTAG 1 cut(s) 431
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.