Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0003557

Physical Location & Seq

Genomic Coordinates Reverse (-)

33483263 .. 33483997

Gene Structure 735 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g39350.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 735 bp

ATGTGGCGGCCGTGGAGCAAATCAACGGTTCAGATTTACAACACGTCATCACCGACCTCGCCGTTCTCGTTCTCCTCCTTCAAAGACATCCAGAACCTCTGCGCCGACGAGCCGCCGCCGCCCGCCGCCGCCAAGAAAGCCTCTGCGATCTTCCACCGCGTCCGAGTCGCCAACTCGCTCCTCCGCGCCTGGTCAACTCGGCCCAAAGATGAGCCTAACCAAACTACGACGCAAAACGACCCGTCGTCTAACTCCATCTCCCTCCCGGGCGCCGAGAAACGCATTGTCGTATACTACACCAGCCTACGTGTCGTGCGGCGGACGTATGAGGACTGCCACGCCGTCCGATCAATACTCCGGGGGTTCCGCGTGACATTGGACGAACGAGATCTGGCGATGGACCACGGCTTCATTGCGGAACTGCAGCAGATTCTGGGTCAAAGGAAGTTGACCCTGCCGAGGGTTTTCATTGGCGGGAGGTACATTGGTGGGGCGGAGGAGGTGAAACAGCTGCACGAGGCTGGCGAGCTCAAGAAGTTTGTGGAAGGCCTGCCCGTACAGGAACCGGGCTCGTGCGGCGCGTGTGGTGGGTACAGGTTTTTACTGTGCGAGGAGTGTAATGGGAGTCATAAGTTGTACTCGGAGAAAGGTGGCTTCAGGAGTTGTACCTCTTGCAATGAGAATGGTCTCATCAGGTGCCCTTCTTGTTCTTGTGCACCAATCTTAGCTAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glutaredoxin

Protein Analysis

245

Amino Acids

27.06

Weight (kDa)

8.87

Isoelectric Point (pI)

56.51

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glutaredoxin	PF00462	96 - 162	3.9e-12	Glutaredoxin
GRXCR1-2_C	PF23733	192 - 237	4.5e-20	GRXCR1/2, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003557)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G58530
fragaria_vesca	FvH4_3g39350 FvH4_7g24960
malus_domestica	MD01G1157000.v1.1 MD03G1062300.v1.1 MD07G1225800.v1.1 MD11G1065900.v1.1
prunus_persica	Prupe.2G254600_v2.0.a1 Prupe.6G052300_v2.0.a1
pyrus_communis	pycom03g04980 pycom06g13500
rosa_chinensis	RchiOBHm_Chr1g0370851 RchiOBHm_Chr1g0370861 RchiOBHm_Chr5g0070781
rosa_laevigata	RLG00000027004 RLG00000036158
rosa_multiflora	Rmu_sc0002944.1_g000025 Rmu_sc0009474.1_g000015 Rmu_sc0009474.1_g000016
rosa_roxburghii	Rroxscaffold_1G00010370 Rroxscaffold_4G00286180 Rroxscaffold_4G00286190
rosa_rugosa	Rorug01G0360000 Rorug05G0408500
rosa_samantha	Rh1AG369600 Rh1BG333100 Rh1CG346600 Rh1DG364300 Rh5AG463900 Rh5BG481700 Rh5CG506200 Rh5DG494600
rosa_wichuraiana	Rw1G032530 Rw1G032540 Rw5G043180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	269, 696
AccI	GTMKAC	1 cut(s)	291
AccII	CGCG	4 cut(s)	159, 186, 369, 581
AcoI	YGGCCR	1 cut(s)	8
AcuI	CTGAAG	1 cut(s)	640
AcyI	GRCGYC	1 cut(s)	270
AfaI	GTAC	5 cut(s)	482, 558, 593, 638, 667
AfiI	CCNNNNNNNGG	2 cut(s)	459, 460
AflIII	ACRYGT	2 cut(s)	42, 307
AgsI	TTSAA	1 cut(s)	82
AhdI	GACNNNNNGTC	1 cut(s)	244
AjiI	CACGTC	1 cut(s)	45
AjnI	CCWGG	1 cut(s)	188
AluBI	AGCT	3 cut(s)	511, 529, 728
AluI	AGCT	3 cut(s)	511, 529, 728
Alw21I	GWGCWC	2 cut(s)	531, 718
Alw26I	GTCTC	1 cut(s)	692
Alw44I	GTGCAC	1 cut(s)	714
AlwNI	CAGNNNCTG	1 cut(s)	433
Ama87I	CYCGRG	1 cut(s)	265
AoxI	GGCC	3 cut(s)	8, 200, 547
ApaLI	GTGCAC	1 cut(s)	714
ApeKI	GCWGC	2 cut(s)	424, 511
AspLEI	GCGC	4 cut(s)	104, 188, 272, 581
AspS9I	GGNCC	2 cut(s)	201, 400
AsuC2I	CCSGG	4 cut(s)	266, 267, 359, 567
AsuHPI	GGTGA	2 cut(s)	42, 514
AvaI	CYCGRG	1 cut(s)	265
AvaII	GGWCC	1 cut(s)	400
BaeGI	GKGCMC	2 cut(s)	701, 718
BaeI	ACNNNNGTAYC	2 cut(s)	472, 505
BanI	GGYRCC	2 cut(s)	269, 696
BanII	GRGCYC	2 cut(s)	531, 572
BauI	CACGAG	2 cut(s)	515, 571
Bbv12I	GWGCWC	2 cut(s)	531, 718
BbvI	GCAGC	2 cut(s)	436, 498
BccI	CCATC	2 cut(s)	263, 391
BceAI	ACGGC	3 cut(s)	46, 326, 421
BciT130I	CCWGG	1 cut(s)	190
BcnI	CCSGG	4 cut(s)	266, 267, 359, 567
BcoDI	GTCTC	1 cut(s)	692
BfaI	CTAG	1 cut(s)	733
BfmI	CTRYAG	1 cut(s)	422
BfoI	RGCGCY	1 cut(s)	273
BglII	AGATCT	1 cut(s)	388
Bme1390I	CCNGG	5 cut(s)	190, 266, 267, 359, 567
Bme18I	GGWCC	1 cut(s)	400
BmeRI	GACNNNNNGTC	1 cut(s)	244
BmeT110I	CYCGRG	1 cut(s)	265
BmgBI	CACGTC	1 cut(s)	45
BmgT120I	GGNCC	2 cut(s)	201, 400
BmiI	GGNNCC	4 cut(s)	271, 365, 564, 698
BmrFI	CCNGG	5 cut(s)	190, 266, 267, 359, 567
BpuEI	CTTGAG	1 cut(s)	515
BpuMI	CCSGG	4 cut(s)	266, 267, 359, 567
BsaAI	YACGTR	1 cut(s)	308
BsaHI	GRCGYC	1 cut(s)	270
BsaI	GGTCTC	1 cut(s)	692
BsaJI	CCNNGG	5 cut(s)	11, 265, 358, 403, 458
BsaXI	ACNNNNNCTCC	2 cut(s)	242, 272
Bsc4I	CCNNNNNNNGG	2 cut(s)	459, 460
Bse3DI	GCAATG	2 cut(s)	411, 682
BseBI	CCWGG	1 cut(s)	190
BseDI	CCNNGG	5 cut(s)	11, 265, 358, 403, 458
BseGI	GGATG	1 cut(s)	87
BseLI	CCNNNNNNNGG	2 cut(s)	459, 460
BseMI	GCAATG	2 cut(s)	411, 682
BseRI	GAGGAG	4 cut(s)	64, 170, 512, 626
BseSI	GKGCMC	2 cut(s)	701, 718
BseX3I	CGGCCG	1 cut(s)	8
BseXI	GCAGC	2 cut(s)	436, 498
BsgI	GTGCAG	1 cut(s)	497
Bsh1236I	CGCG	4 cut(s)	159, 186, 369, 581
Bsh1285I	CGRYCG	1 cut(s)	11
BshFI	GGCC	3 cut(s)	10, 202, 549
BshNI	GGYRCC	2 cut(s)	269, 696
BsiEI	CGRYCG	1 cut(s)	11
BsiHKAI	GWGCWC	2 cut(s)	531, 718
BsiHKCI	CYCGRG	1 cut(s)	265
BsiSI	CCGG	3 cut(s)	266, 358, 566
BslI	CCNNNNNNNGG	2 cut(s)	459, 460
BsmAI	GTCTC	1 cut(s)	692
BsnI	GGCC	3 cut(s)	10, 202, 549
Bso31I	GGTCTC	1 cut(s)	692
BsoBI	CYCGRG	1 cut(s)	265
Bsp1286I	GDGCHC	4 cut(s)	531, 572, 701, 718
Bsp143I	GATC	3 cut(s)	147, 347, 388
BspANI	GGCC	3 cut(s)	10, 202, 549
BspFNI	CGCG	4 cut(s)	159, 186, 369, 581
BspLI	GGNNCC	4 cut(s)	271, 365, 564, 698
BspMAI	CTGCAG	1 cut(s)	426
BspT107I	GGYRCC	2 cut(s)	269, 696
BspTNI	GGTCTC	1 cut(s)	692
BsrDI	GCAATG	2 cut(s)	411, 682
BssECI	CCNNGG	5 cut(s)	11, 265, 358, 403, 458
BssMI	GATC	3 cut(s)	147, 347, 388
BssNAI	GTATAC	1 cut(s)	292
BssNI	GRCGYC	1 cut(s)	270
BssSI	CACGAG	2 cut(s)	515, 571
Bst1107I	GTATAC	1 cut(s)	292
Bst2BI	CACGAG	2 cut(s)	515, 571
Bst2UI	CCWGG	1 cut(s)	190
Bst4CI	ACNGT	2 cut(s)	28, 606
BstACI	GRCGYC	1 cut(s)	270
BstBAI	YACGTR	1 cut(s)	308
BstC8I	GCNNGC	4 cut(s)	123, 523, 527, 551
BstDEI	CTNAG	1 cut(s)	724
BstDSI	CCRYGG	2 cut(s)	11, 403
BstF5I	GGATG	1 cut(s)	87
BstFNI	CGCG	4 cut(s)	159, 186, 369, 581
BstH2I	RGCGCY	1 cut(s)	273
BstHHI	GCGC	4 cut(s)	104, 188, 272, 581
BstKTI	GATC	3 cut(s)	150, 350, 391
BstMAI	GTCTC	1 cut(s)	692
BstMBI	GATC	3 cut(s)	147, 347, 388
BstMCI	CGRYCG	1 cut(s)	11
BstMWI	GCNNNNNNNGC	3 cut(s)	118, 137, 576
BstNI	CCWGG	1 cut(s)	190
BstSCI	CCNGG	5 cut(s)	188, 264, 265, 357, 565
BstSFI	CTRYAG	1 cut(s)	422
BstSLI	GKGCMC	2 cut(s)	701, 718
BstUI	CGCG	4 cut(s)	159, 186, 369, 581
BstV1I	GCAGC	2 cut(s)	436, 498
BstX2I	RGATCY	1 cut(s)	388
BstYI	RGATCY	1 cut(s)	388
BstZ17I	GTATAC	1 cut(s)	292
BstZI	CGGCCG	1 cut(s)	8
BsuRI	GGCC	3 cut(s)	10, 202, 549
BtgI	CCRYGG	2 cut(s)	11, 403
BtgZI	GCGATG	1 cut(s)	410
BtrI	CACGTC	1 cut(s)	45
BtsCI	GGATG	1 cut(s)	87
Cac8I	GCNNGC	4 cut(s)	123, 523, 527, 551
CaiI	CAGNNNCTG	1 cut(s)	433
CfoI	GCGC	4 cut(s)	104, 188, 272, 581
Cfr13I	GGNCC	2 cut(s)	201, 400
Cfr9I	CCCGGG	1 cut(s)	265
CseI	GACGC	2 cut(s)	148, 238
Csp6I	GTAC	5 cut(s)	481, 557, 592, 637, 666
CviQI	GTAC	5 cut(s)	481, 557, 592, 637, 666
DdeI	CTNAG	1 cut(s)	724
DinI	GGCGCC	1 cut(s)	271
DpnI	GATC	3 cut(s)	149, 349, 390
DpnII	GATC	3 cut(s)	147, 347, 388
DriI	GACNNNNNGTC	1 cut(s)	244
EaeI	YGGCCR	1 cut(s)	8
EagI	CGGCCG	1 cut(s)	8
Eam1105I	GACNNNNNGTC	1 cut(s)	244
EciI	GGCGGA	2 cut(s)	334, 509
Ecl136II	GAGCTC	1 cut(s)	529
EclXI	CGGCCG	1 cut(s)	8
Eco147I	AGGCCT	1 cut(s)	549
Eco24I	GRGCYC	2 cut(s)	531, 572
Eco31I	GGTCTC	1 cut(s)	692
Eco47I	GGWCC	1 cut(s)	400
Eco52I	CGGCCG	1 cut(s)	8
Eco53kI	GAGCTC	1 cut(s)	529
Eco57I	CTGAAG	1 cut(s)	640
Eco88I	CYCGRG	1 cut(s)	265
EcoICRI	GAGCTC	1 cut(s)	529
EcoRII	CCWGG	1 cut(s)	188
EcoT38I	GRGCYC	2 cut(s)	531, 572
EgeI	GGCGCC	1 cut(s)	271
EheI	GGCGCC	1 cut(s)	271
FaiI	YATR	3 cut(s)	292, 327, 630
FauI	CCCGC	2 cut(s)	130, 467
FblI	GTMKAC	1 cut(s)	291
FokI	GGATG	1 cut(s)	74
FriOI	GRGCYC	2 cut(s)	531, 572
FspBI	CTAG	1 cut(s)	733
GlaI	GCGC	4 cut(s)	103, 187, 271, 580
HaeII	RGCGCY	1 cut(s)	273
HaeIII	GGCC	3 cut(s)	10, 202, 549
HapII	CCGG	3 cut(s)	266, 358, 566
HgaI	GACGC	2 cut(s)	148, 238
HhaI	GCGC	4 cut(s)	104, 188, 272, 581
Hin1I	GRCGYC	1 cut(s)	270
Hin6I	GCGC	4 cut(s)	102, 186, 270, 579
HinP1I	GCGC	4 cut(s)	102, 186, 270, 579
HincII	GTYRAC	2 cut(s)	195, 450
HindII	GTYRAC	2 cut(s)	195, 450
HinfI	GANTC	3 cut(s)	165, 430, 625
HpaII	CCGG	3 cut(s)	266, 358, 566
HphI	GGTGA	2 cut(s)	42, 514
Hpy166II	GTNNAC	4 cut(s)	195, 292, 450, 716
Hpy188I	TCNGA	4 cut(s)	33, 164, 347, 643
Hpy188III	TCNNGA	3 cut(s)	91, 532, 658
Hpy8I	GTNNAC	4 cut(s)	195, 292, 450, 716
Hpy99I	CGWCG	3 cut(s)	110, 232, 247
HpyAV	CCTTC	3 cut(s)	88, 539, 711
HpyCH4III	ACNGT	2 cut(s)	28, 606
HpyCH4IV	ACGT	3 cut(s)	44, 307, 323
HpyCH4V	TGCA	4 cut(s)	424, 514, 675, 716
HpyF10VI	GCNNNNNNNGC	3 cut(s)	118, 137, 576
HpyF3I	CTNAG	1 cut(s)	724
HpySE526I	ACGT	3 cut(s)	44, 307, 323
Hsp92I	GRCGYC	1 cut(s)	270
HspAI	GCGC	4 cut(s)	102, 186, 270, 579
KasI	GGCGCC	1 cut(s)	269
Kzo9I	GATC	3 cut(s)	147, 347, 388
LmnI	GCTCC	2 cut(s)	15, 183
Lsp1109I	GCAGC	2 cut(s)	436, 498
MaeI	CTAG	1 cut(s)	733
MaeII	ACGT	3 cut(s)	44, 307, 323
MaeIII	GTNAC	1 cut(s)	370
MalI	GATC	3 cut(s)	149, 349, 390
MboI	GATC	3 cut(s)	147, 347, 388
MboII	GAAGA	1 cut(s)	142
MflI	RGATCY	1 cut(s)	388
MhlI	GDGCHC	4 cut(s)	531, 572, 701, 718
Mly113I	GGCGCC	1 cut(s)	270
MlyI	GAGTC	2 cut(s)	174, 634
MspA1I	CMGCKG	1 cut(s)	511
MspI	CCGG	3 cut(s)	266, 358, 566
MspR9I	CCNGG	5 cut(s)	190, 266, 267, 359, 567
MvaI	CCWGG	1 cut(s)	190
MvnI	CGCG	4 cut(s)	159, 186, 369, 581
MwoI	GCNNNNNNNGC	3 cut(s)	118, 137, 576
NarI	GGCGCC	1 cut(s)	270
NciI	CCSGG	4 cut(s)	266, 267, 359, 567
NdeII	GATC	3 cut(s)	147, 347, 388
NlaIV	GGNNCC	4 cut(s)	271, 365, 564, 698
NmeAIII	GCCGAG	3 cut(s)	178, 298, 483
NmuCI	GTSAC	1 cut(s)	370
PceI	AGGCCT	1 cut(s)	549
PcsI	WCGNNNNNNNCGW	4 cut(s)	50, 65, 522, 578
PfeI	GAWTC	1 cut(s)	430
PleI	GAGTC	2 cut(s)	173, 633
PluTI	GGCGCC	1 cut(s)	273
PpsI	GAGTC	2 cut(s)	173, 633
Ppu21I	YACGTR	1 cut(s)	308
Psp124BI	GAGCTC	1 cut(s)	531
Psp6I	CCWGG	1 cut(s)	188
PspGI	CCWGG	1 cut(s)	188
PspN4I	GGNNCC	4 cut(s)	271, 365, 564, 698
PspPI	GGNCC	2 cut(s)	201, 400
PstI	CTGCAG	1 cut(s)	426
PstNI	CAGNNNCTG	1 cut(s)	433
PsuI	RGATCY	1 cut(s)	388
PvuII	CAGCTG	1 cut(s)	511
RsaI	GTAC	5 cut(s)	482, 558, 593, 638, 667
RsaNI	GTAC	5 cut(s)	481, 557, 592, 637, 666
SacI	GAGCTC	1 cut(s)	531
Sau3AI	GATC	3 cut(s)	147, 347, 388
Sau96I	GGNCC	2 cut(s)	201, 400
SchI	GAGTC	2 cut(s)	174, 634
ScrFI	CCNGG	5 cut(s)	190, 266, 267, 359, 567
SduI	GDGCHC	4 cut(s)	531, 572, 701, 718
SfcI	CTRYAG	1 cut(s)	422
SfoI	GGCGCC	1 cut(s)	271
SinI	GGWCC	1 cut(s)	400
SmaI	CCCGGG	1 cut(s)	267
SmlI	CTYRAG	1 cut(s)	530
SmoI	CTYRAG	1 cut(s)	530
SseBI	AGGCCT	1 cut(s)	549
SspDI	GGCGCC	1 cut(s)	269
SspMI	CTAG	1 cut(s)	733
SstI	GAGCTC	1 cut(s)	531
StuI	AGGCCT	1 cut(s)	549
StyD4I	CCNGG	5 cut(s)	188, 264, 265, 357, 565
TaaI	ACNGT	2 cut(s)	28, 606
TaiI	ACGT	3 cut(s)	47, 310, 326
TatI	WGTACW	1 cut(s)	636
TauI	GCSGC	8 cut(s)	10, 115, 118, 121, 128, 131, 319, 579
TfiI	GAWTC	1 cut(s)	430
TseFI	GTSAC	1 cut(s)	370
TseI	GCWGC	2 cut(s)	424, 511
Tsp45I	GTSAC	1 cut(s)	370
TspDTI	ATGAA	2 cut(s)	400, 457
TspMI	CCCGGG	1 cut(s)	265
VneI	GTGCAC	1 cut(s)	714
VpaK11BI	GGWCC	1 cut(s)	400
XmaI	CCCGGG	1 cut(s)	265
XmiI	GTMKAC	1 cut(s)	291
XspI	CTAG	1 cut(s)	733

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.