Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0003929

Physical Location & Seq

Genomic Coordinates Reverse (-)

24141975 .. 24145408

Gene Structure 3434 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G59960.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1080 bp

ATGGAGAAAGTTTCGTCGCCGTCTTCCTCTTTTTCACGGAGGTCTGCTTATCTTGAAGCTCTTACACAAGAGATTAAGAAGAAGCTTACACGGGCTGTTGTCTCTCCAGCACAAACACGCAACTTGTTACAAGACTTATTTGCTGATATAGCTCTCGAAGTAGACGATCGAGCCAAAGATGTGATCCTTAGCAAAGAAGAGGATTTGATTACTTCTGATGAAGCAGATGCTGATGGTCCGTTATGCTTTTTCGATGTCCTTGCTGATTACTATGTGAAAGTGTCTGAGAGGGGGAAGGATATACTTGATTTGATGGTGCAGCTGTGGAGCCAGTCCTTTGCATCACATATATTCTCTCTACTGTTCCATAAATGGCTGTTTGAGGTTGAGCTTGACAATCAAGAAATACTCCTGCGATATTCTTCGGCTCTGGTGCAGGGAGCAACAAATGTGTTCTGGATAGACATCCAGACAAATACGAGGCGCTTCCAAAGTCTCTTTCGGTATCTCCTTGAGGAAGTTGCTTTGGAGCAGATACGATTGAAAAAAATTCCCATTCAGGCTCAGAGGGAACTGTATCTCTTACTCTCTAGGTTCATTTTCTTTTACAATTCAGTGGATAAACTCGATAGCTTCTTGAGGAACTTCCCAGAGTTTCCAAATGCTTTCTTGATTGGAGGACCTGGAGATTTCCTTGTTATCGAACTAACTGATCAGCTGCAAAAACTGAAGGTGGAACCAGTGCTGCTACATTATCTTTCTCAGATGAAGATTCTTCAAGGTATGGAACTGAGAATGACTACTAGCACAAGGTTAAAGGCGTGTTTATACAGTTTTACCTCTCCTGGAGGTCCAATGTACCCGACAAGAGCCGTCCGTCATGCAGCCTGGGATGCTTTGGATTCCCTCTTTCCTGTTGGGCGTTACCCGAGGCATCTCATTAGTCTATTTTTCAGGCTGCTATATCCGTGGTACTGGCCATCCTCATGCTGGAACTTTGTGGTTTCTTGCATTAAGGCGGTACTCTATTCTATCGTAAGGCTCATCTTTTCACGGCGAGAAAAGCCAAGGCAGAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

359

Amino Acids

41.78

Weight (kDa)

8.22

Isoelectric Point (pI)

52.74

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003929)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G59960 AT5G59960 AT5G59960
fragaria_vesca	FvH4_3g35470 FvH4_3g35470
malus_domestica	MD03G1097100.v1.1 MD11G1143700.v1.1
prunus_persica	Prupe.4G098100_v2.0.a1 Prupe.6G081500_v2.0.a1 Prupe.6G081500_v2.0.a1 Prupe.6G081500_v2.0.a1
pyrus_communis	pycom03g08010 pycom11g09330
rosa_chinensis	RchiOBHm_Chr1g0369801 RchiOBHm_Chr5g0063631
rosa_laevigata	RLG00000029314 RLG00000035658
rosa_multiflora	Rmu_sc0000368.1_g000040 Rmu_ssc0000309.1_g000060
rosa_roxburghii	Rroxscaffold_1G00017170 Rroxscaffold_2G00129250
rosa_rugosa	Rorug05G0358400 Rorug05G0358500 Rorug05G0358500 Rorug05G0358600
rosa_samantha	Rh2CG479400 Rh3DG316400 Rh5AG417200 Rh5BG432800 Rh5CG456000 Rh5DG446200 Rh6CG100700
rosa_wichuraiana	Rw3G025090 Rw5G039210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	162
AciI	CCGC	1 cut(s)	1019
AclWI	GGATC	1 cut(s)	178
AcoI	YGGCCR	1 cut(s)	977
AcsI	RAATTY	1 cut(s)	549
AcuI	CTGAAG	1 cut(s)	749
AfaI	GTAC	3 cut(s)	860, 974, 1023
AfiI	CCNNNNNNNGG	1 cut(s)	990
AgsI	TTSAA	3 cut(s)	56, 544, 779
AjnI	CCWGG	3 cut(s)	682, 844, 887
AjuI	GAANNNNNNNTTGG	2 cut(s)	483, 515
AluBI	AGCT	8 cut(s)	59, 85, 152, 322, 391, 633, 718, 1077
AluI	AGCT	8 cut(s)	59, 85, 152, 322, 391, 633, 718, 1077
Alw26I	GTCTC	2 cut(s)	106, 500
AlwI	GGATC	1 cut(s)	178
AlwNI	CAGNNNCTG	1 cut(s)	230
Ama87I	CYCGRG	1 cut(s)	928
AoxI	GGCC	1 cut(s)	977
ApeKI	GCWGC	5 cut(s)	319, 718, 745, 884, 958
ApoI	RAATTY	1 cut(s)	549
AspLEI	GCGC	1 cut(s)	486
AspS9I	GGNCC	3 cut(s)	236, 680, 851
AvaI	CYCGRG	1 cut(s)	928
AvaII	GGWCC	3 cut(s)	236, 680, 851
BalI	TGGCCA	1 cut(s)	979
BbsI	GAAGAC	1 cut(s)	15
BbvI	GCAGC	5 cut(s)	331, 705, 732, 896, 945
BccI	CCATC	3 cut(s)	227, 307, 988
BceAI	ACGGC	3 cut(s)	4, 857, 1070
BcgI	CGANNNNNNTGC	2 cut(s)	242, 276
BciT130I	CCWGG	3 cut(s)	684, 846, 889
BclI	TGATCA	1 cut(s)	712
BcoDI	GTCTC	2 cut(s)	106, 500
BfaI	CTAG	2 cut(s)	591, 804
BfoI	RGCGCY	1 cut(s)	487
BisI	GCNGC	5 cut(s)	320, 719, 746, 885, 959
BlsI	GCNGC	5 cut(s)	321, 720, 747, 886, 960
Bme1390I	CCNGG	3 cut(s)	684, 846, 889
Bme18I	GGWCC	3 cut(s)	236, 680, 851
BmeT110I	CYCGRG	1 cut(s)	928
BmgT120I	GGNCC	3 cut(s)	236, 680, 851
BmiI	GGNNCC	2 cut(s)	329, 738
BmrFI	CCNGG	3 cut(s)	684, 846, 889
BmsI	GCATC	4 cut(s)	217, 350, 883, 943
BpiI	GAAGAC	1 cut(s)	15
BpmI	CTGGAG	3 cut(s)	90, 705, 867
Bpu10I	CCTNAGC	1 cut(s)	188
BpuEI	CTTGAG	2 cut(s)	533, 658
BsaBI	GATNNNNATC	1 cut(s)	464
BsaJI	CCNNGG	4 cut(s)	888, 929, 968, 1067
Bsc4I	CCNNNNNNNGG	1 cut(s)	990
Bse1I	ACTGG	3 cut(s)	331, 740, 980
Bse8I	GATNNNNATC	1 cut(s)	464
BseBI	CCWGG	3 cut(s)	684, 846, 889
BseDI	CCNNGG	4 cut(s)	888, 929, 968, 1067
BseGI	GGATG	3 cut(s)	465, 898, 980
BseJI	GATNNNNATC	1 cut(s)	464
BseLI	CCNNNNNNNGG	1 cut(s)	990
BseMII	CTCAG	4 cut(s)	276, 578, 776, 782
BseNI	ACTGG	3 cut(s)	331, 740, 980
BseXI	GCAGC	5 cut(s)	331, 705, 732, 896, 945
BsgI	GTGCAG	2 cut(s)	338, 455
Bsh1285I	CGRYCG	1 cut(s)	169
BshFI	GGCC	1 cut(s)	979
BsiEI	CGRYCG	1 cut(s)	169
BsiHKCI	CYCGRG	1 cut(s)	928
BslI	CCNNNNNNNGG	1 cut(s)	990
BsmAI	GTCTC	2 cut(s)	106, 500
BsnI	GGCC	1 cut(s)	979
BsoBI	CYCGRG	1 cut(s)	928
Bsp143I	GATC	3 cut(s)	166, 183, 712
BspACI	CCGC	1 cut(s)	1019
BspANI	GGCC	1 cut(s)	979
BspCNI	CTCAG	4 cut(s)	277, 577, 775, 783
BspLI	GGNNCC	2 cut(s)	329, 738
BspPI	GGATC	1 cut(s)	178
BsrI	ACTGG	3 cut(s)	331, 740, 980
BssECI	CCNNGG	4 cut(s)	888, 929, 968, 1067
BssMI	GATC	3 cut(s)	166, 183, 712
BssT1I	CCWWGG	1 cut(s)	1067
Bst2UI	CCWGG	3 cut(s)	684, 846, 889
Bst4CI	ACNGT	3 cut(s)	363, 576, 833
Bst6I	CTCTTC	1 cut(s)	192
BstDEI	CTNAG	5 cut(s)	188, 285, 564, 762, 791
BstDSI	CCRYGG	1 cut(s)	968
BstF5I	GGATG	3 cut(s)	465, 898, 980
BstH2I	RGCGCY	1 cut(s)	487
BstHHI	GCGC	1 cut(s)	486
BstKTI	GATC	3 cut(s)	169, 186, 715
BstMAI	GTCTC	2 cut(s)	106, 500
BstMBI	GATC	3 cut(s)	166, 183, 712
BstMCI	CGRYCG	1 cut(s)	169
BstMWI	GCNNNNNNNGC	3 cut(s)	149, 893, 1063
BstNI	CCWGG	3 cut(s)	684, 846, 889
BstSCI	CCNGG	3 cut(s)	682, 844, 887
BstV1I	GCAGC	5 cut(s)	331, 705, 732, 896, 945
BstV2I	GAAGAC	1 cut(s)	15
BsuRI	GGCC	1 cut(s)	979
BtgI	CCRYGG	1 cut(s)	968
BtsCI	GGATG	3 cut(s)	465, 898, 980
BtsIMutI	CAGTG	2 cut(s)	621, 747
CaiI	CAGNNNCTG	1 cut(s)	230
CfoI	GCGC	1 cut(s)	486
Cfr13I	GGNCC	3 cut(s)	236, 680, 851
Csp6I	GTAC	3 cut(s)	859, 973, 1022
CviAII	CATG	2 cut(s)	881, 987
CviQI	GTAC	3 cut(s)	859, 973, 1022
DdeI	CTNAG	5 cut(s)	188, 285, 564, 762, 791
DpnI	GATC	3 cut(s)	168, 185, 714
DpnII	GATC	3 cut(s)	166, 183, 712
EaeI	YGGCCR	1 cut(s)	977
Eam1104I	CTCTTC	1 cut(s)	192
EarI	CTCTTC	1 cut(s)	192
Eco130I	CCWWGG	1 cut(s)	1067
Eco47I	GGWCC	3 cut(s)	236, 680, 851
Eco57I	CTGAAG	1 cut(s)	749
Eco88I	CYCGRG	1 cut(s)	928
EcoO109I	RGGNCCY	1 cut(s)	680
EcoRII	CCWGG	3 cut(s)	682, 844, 887
EcoT14I	CCWWGG	1 cut(s)	1067
ErhI	CCWWGG	1 cut(s)	1067
FaeI	CATG	2 cut(s)	884, 990
FatI	CATG	2 cut(s)	880, 986
FbaI	TGATCA	1 cut(s)	712
FblI	GTMKAC	1 cut(s)	162
Fnu4HI	GCNGC	5 cut(s)	320, 719, 746, 885, 959
FokI	GGATG	3 cut(s)	452, 905, 967
Fsp4HI	GCNGC	5 cut(s)	320, 719, 746, 885, 959
FspBI	CTAG	2 cut(s)	591, 804
GlaI	GCGC	1 cut(s)	485
GluI	GCNGC	5 cut(s)	320, 719, 746, 885, 959
GsuI	CTGGAG	3 cut(s)	90, 705, 867
HaeII	RGCGCY	1 cut(s)	487
HaeIII	GGCC	1 cut(s)	979
HhaI	GCGC	1 cut(s)	486
Hin1II	CATG	2 cut(s)	884, 990
Hin6I	GCGC	1 cut(s)	484
HinP1I	GCGC	1 cut(s)	484
HindIII	AAGCTT	1 cut(s)	83
HinfI	GANTC	2 cut(s)	772, 902
Hpy166II	GTNNAC	1 cut(s)	163
Hpy188I	TCNGA	4 cut(s)	217, 286, 567, 765
Hpy188III	TCNNGA	7 cut(s)	53, 155, 401, 457, 469, 637, 670
Hpy8I	GTNNAC	1 cut(s)	163
Hpy99I	CGWCG	1 cut(s)	19
HpyAV	CCTTC	2 cut(s)	289, 724
HpyCH4III	ACNGT	3 cut(s)	363, 576, 833
HpyCH4V	TGCA	6 cut(s)	319, 341, 436, 721, 884, 1011
HpyF10VI	GCNNNNNNNGC	3 cut(s)	149, 893, 1063
HpyF3I	CTNAG	5 cut(s)	188, 285, 564, 762, 791
Hsp92II	CATG	2 cut(s)	884, 990
HspAI	GCGC	1 cut(s)	484
Ksp22I	TGATCA	1 cut(s)	712
Kzo9I	GATC	3 cut(s)	166, 183, 712
LmnI	GCTCC	3 cut(s)	327, 440, 529
Lsp1109I	GCAGC	5 cut(s)	331, 705, 732, 896, 945
LweI	GCATC	4 cut(s)	217, 350, 883, 943
MaeI	CTAG	2 cut(s)	591, 804
MaeIII	GTNAC	2 cut(s)	126, 923
MalI	GATC	3 cut(s)	168, 185, 714
MboI	GATC	3 cut(s)	166, 183, 712
MboII	GAAGA	6 cut(s)	15, 91, 209, 414, 767, 781
MlsI	TGGCCA	1 cut(s)	979
MluCI	AATT	2 cut(s)	549, 610
MluNI	TGGCCA	1 cut(s)	979
Mox20I	TGGCCA	1 cut(s)	979
MscI	TGGCCA	1 cut(s)	979
MseI	TTAA	3 cut(s)	75, 815, 1014
MslI	CAYNNNNRTG	1 cut(s)	985
Msp20I	TGGCCA	1 cut(s)	979
MspA1I	CMGCKG	2 cut(s)	322, 718
MspR9I	CCNGG	3 cut(s)	684, 846, 889
MvaI	CCWGG	3 cut(s)	684, 846, 889
MwoI	GCNNNNNNNGC	3 cut(s)	149, 893, 1063
NdeII	GATC	3 cut(s)	166, 183, 712
NlaIII	CATG	2 cut(s)	884, 990
NlaIV	GGNNCC	2 cut(s)	329, 738
PcsI	WCGNNNNNNNCGW	1 cut(s)	162
PfeI	GAWTC	2 cut(s)	772, 902
PfoI	TCCNGGA	1 cut(s)	844
PkrI	GCNGC	5 cut(s)	321, 720, 747, 886, 960
Ple19I	CGATCG	1 cut(s)	169
PpuMI	RGGWCCY	1 cut(s)	680
Psp5II	RGGWCCY	1 cut(s)	680
Psp6I	CCWGG	3 cut(s)	682, 844, 887
PspGI	CCWGG	3 cut(s)	682, 844, 887
PspN4I	GGNNCC	2 cut(s)	329, 738
PspPI	GGNCC	3 cut(s)	236, 680, 851
PspPPI	RGGWCCY	1 cut(s)	680
PstNI	CAGNNNCTG	1 cut(s)	230
PvuI	CGATCG	1 cut(s)	169
PvuII	CAGCTG	2 cut(s)	322, 718
RsaI	GTAC	3 cut(s)	860, 974, 1023
RsaNI	GTAC	3 cut(s)	859, 973, 1022
RseI	CAYNNNNRTG	1 cut(s)	985
SaqAI	TTAA	3 cut(s)	75, 815, 1014
SatI	GCNGC	5 cut(s)	320, 719, 746, 885, 959
Sau3AI	GATC	3 cut(s)	166, 183, 712
Sau96I	GGNCC	3 cut(s)	236, 680, 851
ScrFI	CCNGG	3 cut(s)	684, 846, 889
SfaNI	GCATC	4 cut(s)	217, 350, 883, 943
SinI	GGWCC	3 cut(s)	236, 680, 851
SmiMI	CAYNNNNRTG	1 cut(s)	985
SmlI	CTYRAG	2 cut(s)	512, 637
SmoI	CTYRAG	2 cut(s)	512, 637
Sse9I	AATT	2 cut(s)	549, 610
SsiI	CCGC	1 cut(s)	1019
SspMI	CTAG	2 cut(s)	591, 804
StyD4I	CCNGG	3 cut(s)	682, 844, 887
StyI	CCWWGG	1 cut(s)	1067
TaaI	ACNGT	3 cut(s)	363, 576, 833
TaqI	TCGA	5 cut(s)	156, 169, 252, 627, 702
TasI	AATT	2 cut(s)	549, 610
TfiI	GAWTC	2 cut(s)	772, 902
Tru1I	TTAA	3 cut(s)	75, 815, 1014
Tru9I	TTAA	3 cut(s)	75, 815, 1014
TscAI	CASTG	2 cut(s)	621, 747
TseI	GCWGC	5 cut(s)	319, 718, 745, 884, 958
TspDTI	ATGAA	3 cut(s)	234, 586, 782
TspGWI	ACGGA	4 cut(s)	52, 228, 866, 957
TspRI	CASTG	2 cut(s)	621, 747
VpaK11BI	GGWCC	3 cut(s)	236, 680, 851
XapI	RAATTY	1 cut(s)	549
XcmI	CCANNNNNNNNNTGG	1 cut(s)	987
XmiI	GTMKAC	1 cut(s)	162
XspI	CTAG	2 cut(s)	591, 804

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.