Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0003929

Physical Location & Seq

Genomic Coordinates Forward (+)

5516730 .. 5521992

Gene Structure 5263 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G081500.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1062 bp

ATGTCAACCCCTCGAAGCTCTGCCTATCTCGATGCCGTCACTCTAGAAATCGAGAAGAAGCTCCAGCGGGCGCTAGCTTCTCCGACACAGCGGCGCAACTTGTTGCAGGAGTTGTTTGCTGACATAGCTTTAGAGATCGATGAGCGAGCCAAAGATATGATTCTCAGCAGGGAAGAAGATGCAATTTCTCCTGCAGAGGATAGCATGGATGGTCAGCTATGCTTTTATGATGTGCTTACTGACCATTATGTTCAGGTGCCCGCGAGTGGAAAATGCATCCTTGATTTGATTGTCCAACTATGGAGCCAGTCATTTGCATCTCATATTTTTGCCTTGTTATTCCACAAATGGCTGTTTGAAGTTCAACTTGACAACTCTGAAGTTCTTCTTCGTTACTCATCTGCTCTTATTGAAGGTGCAACAAATGTTTTCTGGATTGATACTCAATCAAATACAAGGCGATTTCAATCCCTCTTTCGTTATCTTCTTGAAGATGTTGCTTTGGAGCCCAAACGGTTGAATAAAATCCCTGTACAGGTCCAGCGAGATCTATTTCTTTTACTTTCGAGGTTTATATTTTTTTATAACTCAGTTGACAAACTCGGGAGCTTCTTAAGGCAATTTCCTCTTTTTCCGAATGCTTTTCTGGTTGGTGGTGCAGAAGACTTCTTTGTTATTGAACTTGCAGATCAGCTTCAAAAACTGAAGGTGGAACCAGTATTGCTGCACTATCTGTCGCACATAAAACTTCTCCAGGGAATGGATCTGAGAATGGCCACAAGTACAAGGTTAAAGGCTTGTTTGTATAGTTTCACTTCTCCTGGTGGTCCAATGTACCCCACAAGAGCTGTTCGTCATGCTGCCTGGGATGCATTAGATTTGCTTTTTCCCGTTGGGAGATATCCGCGGCATCTTATAAGCCTGTTCTTCCGACTGTTGTATCCGTGGTACTGGCCCTCTTCTTGTTGGAATTTCATAATGGATTGCATAAAGGCAGTATTGTATTCTCTGTTAGGATTAATCTATTCAAGTTTGGAGAAGCTGAGGAAGCCAAAGTTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

354

Amino Acids

40.92

Weight (kDa)

7.05

Isoelectric Point (pI)

59.12

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003929)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G59960 AT5G59960 AT5G59960
fragaria_vesca	FvH4_3g35470 FvH4_3g35470
malus_domestica	MD03G1097100.v1.1 MD11G1143700.v1.1
prunus_persica	Prupe.4G098100_v2.0.a1 Prupe.6G081500_v2.0.a1 Prupe.6G081500_v2.0.a1 Prupe.6G081500_v2.0.a1
pyrus_communis	pycom03g08010 pycom11g09330
rosa_chinensis	RchiOBHm_Chr1g0369801 RchiOBHm_Chr5g0063631
rosa_laevigata	RLG00000029314 RLG00000035658
rosa_multiflora	Rmu_sc0000368.1_g000040 Rmu_ssc0000309.1_g000060
rosa_roxburghii	Rroxscaffold_1G00017170 Rroxscaffold_2G00129250
rosa_rugosa	Rorug05G0358400 Rorug05G0358500 Rorug05G0358500 Rorug05G0358600
rosa_samantha	Rh2CG479400 Rh3DG316400 Rh5AG417200 Rh5BG432800 Rh5CG456000 Rh5DG446200 Rh6CG100700
rosa_wichuraiana	Rw3G025090 Rw5G039210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	585, 917
AccB1I	GGYRCC	1 cut(s)	256
AccB7I	CCANNNNNTGG	1 cut(s)	760
AccII	CGCG	2 cut(s)	263, 907
AciI	CCGC	5 cut(s)	67, 91, 261, 905, 907
AclWI	GGATC	1 cut(s)	771
AcoI	YGGCCR	1 cut(s)	774
AcsI	RAATTY	1 cut(s)	970
AcuI	CTGAAG	2 cut(s)	399, 725
AfaI	GTAC	4 cut(s)	534, 784, 836, 950
AfiI	CCNNNNNNNGG	3 cut(s)	266, 535, 760
AflII	CTTAAG	1 cut(s)	613
AgsI	TTSAA	9 cut(s)	359, 365, 413, 467, 491, 520, 680, 698, 1029
AjnI	CCWGG	3 cut(s)	753, 820, 863
AluBI	AGCT	9 cut(s)	18, 61, 77, 128, 217, 609, 694, 848, 1042
AluI	AGCT	9 cut(s)	18, 61, 77, 128, 217, 609, 694, 848, 1042
AlwI	GGATC	1 cut(s)	771
Ama87I	CYCGRG	1 cut(s)	602
AoxI	GGCC	2 cut(s)	774, 953
ApeKI	GCWGC	2 cut(s)	724, 860
ApoI	RAATTY	1 cut(s)	970
AseI	ATTAAT	1 cut(s)	1019
Asp700I	GAANNNNTTC	1 cut(s)	384
AspLEI	GCGC	2 cut(s)	73, 96
AspS9I	GGNCC	3 cut(s)	538, 827, 954
AsuNHI	GCTAGC	1 cut(s)	73
AvaI	CYCGRG	1 cut(s)	602
AvaII	GGWCC	2 cut(s)	538, 827
BaeGI	GKGCMC	1 cut(s)	261
BaeI	ACNNNNGTAYC	2 cut(s)	923, 956
BalI	TGGCCA	1 cut(s)	776
BanI	GGYRCC	1 cut(s)	256
BanII	GRGCYC	1 cut(s)	510
BbsI	GAAGAC	1 cut(s)	669
BbvCI	CCTCAGC	1 cut(s)	1043
BbvI	GCAGC	2 cut(s)	711, 847
BccI	CCATC	1 cut(s)	203
BceAI	ACGGC	1 cut(s)	20
BciT130I	CCWGG	3 cut(s)	755, 822, 865
BciVI	GTATCC	1 cut(s)	951
BfaI	CTAG	2 cut(s)	44, 74
BfmI	CTRYAG	1 cut(s)	192
BfoI	RGCGCY	1 cut(s)	74
BfrI	CTTAAG	1 cut(s)	613
BfuI	GTATCC	1 cut(s)	951
BglII	AGATCT	1 cut(s)	547
BisI	GCNGC	4 cut(s)	92, 725, 861, 908
BlsI	GCNGC	4 cut(s)	93, 726, 862, 909
Bme1390I	CCNGG	3 cut(s)	755, 822, 865
Bme18I	GGWCC	2 cut(s)	538, 827
BmeT110I	CYCGRG	1 cut(s)	602
BmgT120I	GGNCC	3 cut(s)	538, 827, 954
BmiI	GGNNCC	4 cut(s)	258, 305, 507, 714
BmrFI	CCNGG	3 cut(s)	755, 822, 865
BmsI	GCATC	6 cut(s)	22, 169, 285, 326, 859, 919
BmtI	GCTAGC	1 cut(s)	77
BpiI	GAAGAC	1 cut(s)	669
BpmI	CTGGAG	2 cut(s)	47, 737
Bpu10I	CCTNAGC	1 cut(s)	1043
Bsa29I	ATCGAT	1 cut(s)	138
BsaBI	GATNNNNATC	1 cut(s)	466
BsaJI	CCNNGG	4 cut(s)	754, 864, 905, 944
Bsc4I	CCNNNNNNNGG	3 cut(s)	266, 535, 760
Bse1I	ACTGG	3 cut(s)	307, 716, 956
Bse8I	GATNNNNATC	1 cut(s)	466
BseBI	CCWGG	3 cut(s)	755, 822, 865
BseCI	ATCGAT	1 cut(s)	138
BseDI	CCNNGG	4 cut(s)	754, 864, 905, 944
BseGI	GGATG	3 cut(s)	214, 276, 874
BseJI	GATNNNNATC	1 cut(s)	466
BseLI	CCNNNNNNNGG	3 cut(s)	266, 535, 760
BseMII	CTCAG	4 cut(s)	178, 603, 758, 1034
BseNI	ACTGG	3 cut(s)	307, 716, 956
BseSI	GKGCMC	1 cut(s)	261
BseXI	GCAGC	2 cut(s)	711, 847
BsgI	GTGCAG	2 cut(s)	678, 710
Bsh1236I	CGCG	2 cut(s)	263, 907
BshFI	GGCC	2 cut(s)	776, 955
BshNI	GGYRCC	1 cut(s)	256
BshVI	ATCGAT	1 cut(s)	138
BsiHKCI	CYCGRG	1 cut(s)	602
BslI	CCNNNNNNNGG	3 cut(s)	266, 535, 760
BsmI	GAATGC	1 cut(s)	643
BsnI	GGCC	2 cut(s)	776, 955
BsoBI	CYCGRG	1 cut(s)	602
Bsp1286I	GDGCHC	2 cut(s)	261, 510
Bsp1407I	TGTACA	1 cut(s)	532
Bsp143I	GATC	4 cut(s)	135, 547, 688, 763
BspACI	CCGC	5 cut(s)	67, 91, 261, 905, 907
BspANI	GGCC	2 cut(s)	776, 955
BspCNI	CTCAG	4 cut(s)	177, 602, 759, 1035
BspDI	ATCGAT	1 cut(s)	138
BspFNI	CGCG	2 cut(s)	263, 907
BspLI	GGNNCC	4 cut(s)	258, 305, 507, 714
BspMAI	CTGCAG	1 cut(s)	196
BspOI	GCTAGC	1 cut(s)	77
BspPI	GGATC	1 cut(s)	771
BspT107I	GGYRCC	1 cut(s)	256
BspTI	CTTAAG	1 cut(s)	613
BsrGI	TGTACA	1 cut(s)	532
BsrI	ACTGG	3 cut(s)	307, 716, 956
BssECI	CCNNGG	4 cut(s)	754, 864, 905, 944
BssMI	GATC	4 cut(s)	135, 547, 688, 763
Bst2UI	CCWGG	3 cut(s)	755, 822, 865
Bst4CI	ACNGT	2 cut(s)	516, 936
Bst6I	CTCTTC	1 cut(s)	964
BstAFI	CTTAAG	1 cut(s)	613
BstAUI	TGTACA	1 cut(s)	532
BstC8I	GCNNGC	4 cut(s)	69, 75, 147, 261
BstDEI	CTNAG	4 cut(s)	164, 589, 767, 1043
BstDSI	CCRYGG	2 cut(s)	905, 944
BstF5I	GGATG	3 cut(s)	214, 276, 874
BstFNI	CGCG	2 cut(s)	263, 907
BstH2I	RGCGCY	1 cut(s)	74
BstHHI	GCGC	2 cut(s)	73, 96
BstKTI	GATC	4 cut(s)	138, 550, 691, 766
BstMBI	GATC	4 cut(s)	135, 547, 688, 763
BstMWI	GCNNNNNNNGC	3 cut(s)	125, 869, 1048
BstNI	CCWGG	3 cut(s)	755, 822, 865
BstSCI	CCNGG	3 cut(s)	753, 820, 863
BstSFI	CTRYAG	1 cut(s)	192
BstSLI	GKGCMC	1 cut(s)	261
BstUI	CGCG	2 cut(s)	263, 907
BstV1I	GCAGC	2 cut(s)	711, 847
BstV2I	GAAGAC	1 cut(s)	669
BstX2I	RGATCY	2 cut(s)	547, 763
BstYI	RGATCY	2 cut(s)	547, 763
Bsu15I	ATCGAT	1 cut(s)	138
BsuI	GTATCC	1 cut(s)	951
BsuRI	GGCC	2 cut(s)	776, 955
BsuTUI	ATCGAT	1 cut(s)	138
BtgI	CCRYGG	2 cut(s)	905, 944
BtsCI	GGATG	3 cut(s)	214, 276, 874
Cac8I	GCNNGC	4 cut(s)	69, 75, 147, 261
CfoI	GCGC	2 cut(s)	73, 96
Cfr13I	GGNCC	3 cut(s)	538, 827, 954
Cfr42I	CCGCGG	1 cut(s)	908
ClaI	ATCGAT	1 cut(s)	138
Csp6I	GTAC	4 cut(s)	533, 783, 835, 949
CviAII	CATG	2 cut(s)	205, 857
CviQI	GTAC	4 cut(s)	533, 783, 835, 949
DdeI	CTNAG	4 cut(s)	164, 589, 767, 1043
DpnI	GATC	4 cut(s)	137, 549, 690, 765
DpnII	GATC	4 cut(s)	135, 547, 688, 763
EaeI	YGGCCR	1 cut(s)	774
Eam1104I	CTCTTC	1 cut(s)	964
EarI	CTCTTC	1 cut(s)	964
Eco24I	GRGCYC	1 cut(s)	510
Eco32I	GATATC	1 cut(s)	902
Eco47I	GGWCC	2 cut(s)	538, 827
Eco57I	CTGAAG	2 cut(s)	399, 725
Eco88I	CYCGRG	1 cut(s)	602
EcoRII	CCWGG	3 cut(s)	753, 820, 863
EcoRV	GATATC	1 cut(s)	902
EcoT22I	ATGCAT	2 cut(s)	278, 874
EcoT38I	GRGCYC	1 cut(s)	510
FaeI	CATG	2 cut(s)	208, 860
FalI	AAGNNNNNCTT	4 cut(s)	351, 383, 372, 404
FatI	CATG	2 cut(s)	204, 856
FauI	CCCGC	2 cut(s)	60, 268
Fnu4HI	GCNGC	4 cut(s)	92, 725, 861, 908
FokI	GGATG	3 cut(s)	221, 263, 881
FriOI	GRGCYC	1 cut(s)	510
Fsp4HI	GCNGC	4 cut(s)	92, 725, 861, 908
FspBI	CTAG	2 cut(s)	44, 74
GlaI	GCGC	2 cut(s)	72, 95
GluI	GCNGC	4 cut(s)	92, 725, 861, 908
GsuI	CTGGAG	2 cut(s)	47, 737
HaeII	RGCGCY	1 cut(s)	74
HaeIII	GGCC	2 cut(s)	776, 955
HhaI	GCGC	2 cut(s)	73, 96
Hin1II	CATG	2 cut(s)	208, 860
Hin6I	GCGC	2 cut(s)	71, 94
HinP1I	GCGC	2 cut(s)	71, 94
HincII	GTYRAC	2 cut(s)	6, 595
HindII	GTYRAC	2 cut(s)	6, 595
HinfI	GANTC	1 cut(s)	160
Hpy166II	GTNNAC	2 cut(s)	6, 595
Hpy188I	TCNGA	5 cut(s)	84, 379, 636, 768, 932
Hpy188III	TCNNGA	6 cut(s)	29, 44, 52, 433, 488, 604
Hpy8I	GTNNAC	2 cut(s)	6, 595
HpyAV	CCTTC	2 cut(s)	407, 700
HpyCH4III	ACNGT	2 cut(s)	516, 936
HpyF10VI	GCNNNNNNNGC	3 cut(s)	125, 869, 1048
HpyF3I	CTNAG	4 cut(s)	164, 589, 767, 1043
Hsp92II	CATG	2 cut(s)	208, 860
HspAI	GCGC	2 cut(s)	71, 94
KspI	CCGCGG	1 cut(s)	908
Kzo9I	GATC	4 cut(s)	135, 547, 688, 763
LmnI	GCTCC	4 cut(s)	66, 303, 505, 606
Lsp1109I	GCAGC	2 cut(s)	711, 847
LweI	GCATC	6 cut(s)	22, 169, 285, 326, 859, 919
MaeI	CTAG	2 cut(s)	44, 74
MaeIII	GTNAC	2 cut(s)	37, 392
MalI	GATC	4 cut(s)	137, 549, 690, 765
MboI	GATC	4 cut(s)	135, 547, 688, 763
MflI	RGATCY	2 cut(s)	547, 763
MhlI	GDGCHC	2 cut(s)	261, 510
MlsI	TGGCCA	1 cut(s)	776
MluCI	AATT	3 cut(s)	183, 620, 970
MluNI	TGGCCA	1 cut(s)	776
MmeI	TCCRAC	4 cut(s)	107, 319, 947, 955
MnlI	CCTC	7 cut(s)	21, 190, 482, 561, 636, 967, 1038
Mox20I	TGGCCA	1 cut(s)	776
Mph1103I	ATGCAT	2 cut(s)	278, 874
MroXI	GAANNNNTTC	1 cut(s)	384
MscI	TGGCCA	1 cut(s)	776
MseI	TTAA	4 cut(s)	614, 791, 1019, 1060
Msp20I	TGGCCA	1 cut(s)	776
MspA1I	CMGCKG	3 cut(s)	67, 91, 907
MspCI	CTTAAG	1 cut(s)	613
MspR9I	CCNGG	3 cut(s)	755, 822, 865
Mva1269I	GAATGC	1 cut(s)	643
MvaI	CCWGG	3 cut(s)	755, 822, 865
MvnI	CGCG	2 cut(s)	263, 907
MwoI	GCNNNNNNNGC	3 cut(s)	125, 869, 1048
NdeII	GATC	4 cut(s)	135, 547, 688, 763
NheI	GCTAGC	1 cut(s)	73
NlaIII	CATG	2 cut(s)	208, 860
NlaIV	GGNNCC	4 cut(s)	258, 305, 507, 714
NmuCI	GTSAC	1 cut(s)	37
NsiI	ATGCAT	2 cut(s)	278, 874
PctI	GAATGC	1 cut(s)	643
PdmI	GAANNNNTTC	1 cut(s)	384
PfeI	GAWTC	1 cut(s)	160
PflMI	CCANNNNNTGG	1 cut(s)	760
PkrI	GCNGC	4 cut(s)	93, 726, 862, 909
PshBI	ATTAAT	1 cut(s)	1019
PsiI	TTATAA	2 cut(s)	585, 917
Psp6I	CCWGG	3 cut(s)	753, 820, 863
PspGI	CCWGG	3 cut(s)	753, 820, 863
PspN4I	GGNNCC	4 cut(s)	258, 305, 507, 714
PspPI	GGNCC	3 cut(s)	538, 827, 954
PstI	CTGCAG	1 cut(s)	196
PsuI	RGATCY	2 cut(s)	547, 763
RsaI	GTAC	4 cut(s)	534, 784, 836, 950
RsaNI	GTAC	4 cut(s)	533, 783, 835, 949
SacII	CCGCGG	1 cut(s)	908
SaqAI	TTAA	4 cut(s)	614, 791, 1019, 1060
SatI	GCNGC	4 cut(s)	92, 725, 861, 908
Sau3AI	GATC	4 cut(s)	135, 547, 688, 763
Sau96I	GGNCC	3 cut(s)	538, 827, 954
ScrFI	CCNGG	3 cut(s)	755, 822, 865
SduI	GDGCHC	2 cut(s)	261, 510
SfaNI	GCATC	6 cut(s)	22, 169, 285, 326, 859, 919
SfcI	CTRYAG	1 cut(s)	192
Sfr303I	CCGCGG	1 cut(s)	908
SgrBI	CCGCGG	1 cut(s)	908
SinI	GGWCC	2 cut(s)	538, 827
SmlI	CTYRAG	1 cut(s)	613
SmoI	CTYRAG	1 cut(s)	613
Sse9I	AATT	3 cut(s)	183, 620, 970
SsiI	CCGC	5 cut(s)	67, 91, 261, 905, 907
SspMI	CTAG	2 cut(s)	44, 74
StyD4I	CCNGG	3 cut(s)	753, 820, 863
TaaI	ACNGT	2 cut(s)	516, 936
TaqI	TCGA	5 cut(s)	13, 30, 51, 138, 566
TasI	AATT	3 cut(s)	183, 620, 970
TatI	WGTACW	2 cut(s)	532, 782
TauI	GCSGC	2 cut(s)	94, 910
TfiI	GAWTC	1 cut(s)	160
Tru1I	TTAA	4 cut(s)	614, 791, 1019, 1060
Tru9I	TTAA	4 cut(s)	614, 791, 1019, 1060
TseFI	GTSAC	1 cut(s)	37
TseI	GCWGC	2 cut(s)	724, 860
Tsp45I	GTSAC	1 cut(s)	37
TspDTI	ATGAA	1 cut(s)	964
TspGWI	ACGGA	1 cut(s)	933
Van91I	CCANNNNNTGG	1 cut(s)	760
Vha464I	CTTAAG	1 cut(s)	613
VpaK11BI	GGWCC	2 cut(s)	538, 827
VspI	ATTAAT	1 cut(s)	1019
XapI	RAATTY	1 cut(s)	970
XbaI	TCTAGA	1 cut(s)	43
XmnI	GAANNNNTTC	1 cut(s)	384
XspI	CTAG	2 cut(s)	44, 74
Zsp2I	ATGCAT	2 cut(s)	278, 874

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.