Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0003929

Physical Location & Seq

Genomic Coordinates Reverse (-)

11166888 .. 11168752

Gene Structure 1865 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG100700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 702 bp

ATGTTTTTTACCCAACAAACTTATCAATTGTATTGTCTGCACATTTGCAGGATTGACATTCAGTCAAATACAAGGTGGTTTGAATCCCTCTTTCTTTATCTTCTTGAGGATGTTGCTTTGAAACCCACCCGGTTAAATAAAATTCTTGTACAGGTCCAGCGAGATCTGTATCTTTTACTTTCAAGGTTTATATTCTTTTATAACTCAGTTGACAAACTTGAGAGCTTCTTAAGGCACTTTCCCGTATTCCCAAATGCTTTTCTGGTTGGTGGTCCTGCAGACTTCTTTGTTATTGAACTTGCAGATCAGCTTCAAAAATTGAAGGTGGAACCGGTATTGCTCCATTACTTTTCACACATTAAAGTTCTCCAGGGCATGGAGCTGAGAATGGCCACAAGTACAAGGTTAAAGACTTGTTTGTATAGCTTCACTTCTCCTGGTGGTCCAATGTACCCTACAAGAGTTGTTCGTCATGCTGCCTGGGATGCTTTAGATTTGCTTTTTCCATTATCTCTTGATTTTAGATTGGCAATAAGCTCAAGAAGTTTGCGACTTGTAAATATGTTACATATTTGTCAGGAGCATGAACTATCAAAATGTGATTTCAAGCTGTTGAGTAGCTTGAAATTTTTGTGGGTCGTAGAGTTACAGAGAGAAGTAGAGAAGCAAAGGAGCGCTAGATCAACAAGAAAATCAGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

233

Amino Acids

27.48

Weight (kDa)

9.22

Isoelectric Point (pI)

53.7

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0003929)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G59960 AT5G59960 AT5G59960
fragaria_vesca	FvH4_3g35470 FvH4_3g35470
malus_domestica	MD03G1097100.v1.1 MD11G1143700.v1.1
prunus_persica	Prupe.4G098100_v2.0.a1 Prupe.6G081500_v2.0.a1 Prupe.6G081500_v2.0.a1 Prupe.6G081500_v2.0.a1
pyrus_communis	pycom03g08010 pycom11g09330
rosa_chinensis	RchiOBHm_Chr1g0369801 RchiOBHm_Chr5g0063631
rosa_laevigata	RLG00000029314 RLG00000035658
rosa_multiflora	Rmu_sc0000368.1_g000040 Rmu_ssc0000309.1_g000060
rosa_roxburghii	Rroxscaffold_1G00017170 Rroxscaffold_2G00129250
rosa_rugosa	Rorug05G0358400 Rorug05G0358500 Rorug05G0358500 Rorug05G0358600
rosa_samantha	Rh2CG479400 Rh3DG316400 Rh5AG417200 Rh5BG432800 Rh5CG456000 Rh5DG446200 Rh6CG100700
rosa_wichuraiana	Rw3G025090 Rw5G039210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	201
AccB7I	CCANNNNNTGG	1 cut(s)	376
AcoI	YGGCCR	1 cut(s)	390
AcsI	RAATTY	2 cut(s)	141, 626
AfaI	GTAC	3 cut(s)	150, 400, 452
AfeI	AGCGCT	1 cut(s)	676
AfiI	CCNNNNNNNGG	1 cut(s)	376
AflII	CTTAAG	1 cut(s)	229
AgeI	ACCGGT	1 cut(s)	331
AgsI	TTSAA	8 cut(s)	83, 121, 183, 296, 314, 322, 607, 625
AhdI	GACNNNNNGTC	1 cut(s)	61
AjnI	CCWGG	3 cut(s)	369, 436, 479
AluBI	AGCT	7 cut(s)	225, 310, 382, 426, 537, 610, 621
AluI	AGCT	7 cut(s)	225, 310, 382, 426, 537, 610, 621
Aor51HI	AGCGCT	1 cut(s)	676
AoxI	GGCC	1 cut(s)	390
ApeKI	GCWGC	1 cut(s)	476
ApoI	RAATTY	2 cut(s)	141, 626
AsiGI	ACCGGT	1 cut(s)	331
AspLEI	GCGC	1 cut(s)	677
AspS9I	GGNCC	3 cut(s)	154, 272, 443
AsuC2I	CCSGG	1 cut(s)	130
AvaII	GGWCC	3 cut(s)	154, 272, 443
BalI	TGGCCA	1 cut(s)	392
BbvI	GCAGC	1 cut(s)	463
BciT130I	CCWGG	3 cut(s)	371, 438, 481
BcnI	CCSGG	1 cut(s)	130
BfaI	CTAG	1 cut(s)	678
BfmI	CTRYAG	1 cut(s)	276
BfoI	RGCGCY	1 cut(s)	678
BfrI	CTTAAG	1 cut(s)	229
BglII	AGATCT	1 cut(s)	163
BisI	GCNGC	1 cut(s)	477
BlsI	GCNGC	1 cut(s)	478
Bme1390I	CCNGG	4 cut(s)	130, 371, 438, 481
Bme18I	GGWCC	3 cut(s)	154, 272, 443
BmeRI	GACNNNNNGTC	1 cut(s)	61
BmgT120I	GGNCC	3 cut(s)	154, 272, 443
BmiI	GGNNCC	1 cut(s)	330
BmrFI	CCNGG	4 cut(s)	130, 371, 438, 481
BmsI	GCATC	1 cut(s)	475
BpmI	CTGGAG	1 cut(s)	353
BpuEI	CTTGAG	3 cut(s)	125, 239, 523
BpuMI	CCSGG	1 cut(s)	130
BsaBI	GATNNNNATC	1 cut(s)	168
BsaJI	CCNNGG	2 cut(s)	370, 480
BsaWI	WCCGGW	1 cut(s)	331
Bsc4I	CCNNNNNNNGG	1 cut(s)	376
Bse118I	RCCGGY	1 cut(s)	331
Bse8I	GATNNNNATC	1 cut(s)	168
BseBI	CCWGG	3 cut(s)	371, 438, 481
BseDI	CCNNGG	2 cut(s)	370, 480
BseGI	GGATG	2 cut(s)	115, 490
BseJI	GATNNNNATC	1 cut(s)	168
BseLI	CCNNNNNNNGG	1 cut(s)	376
BseMII	CTCAG	2 cut(s)	219, 374
BseXI	GCAGC	1 cut(s)	463
BsgI	GTGCAG	1 cut(s)	23
BshFI	GGCC	1 cut(s)	392
BshTI	ACCGGT	1 cut(s)	331
BsiSI	CCGG	2 cut(s)	130, 332
BslI	CCNNNNNNNGG	1 cut(s)	376
BsnI	GGCC	1 cut(s)	392
Bsp1407I	TGTACA	1 cut(s)	148
Bsp143I	GATC	3 cut(s)	163, 304, 680
BspANI	GGCC	1 cut(s)	392
BspCNI	CTCAG	2 cut(s)	218, 375
BspLI	GGNNCC	1 cut(s)	330
BspMAI	CTGCAG	1 cut(s)	280
BspTI	CTTAAG	1 cut(s)	229
BsrFI	RCCGGY	1 cut(s)	331
BsrGI	TGTACA	1 cut(s)	148
BssAI	RCCGGY	1 cut(s)	331
BssECI	CCNNGG	2 cut(s)	370, 480
BssMI	GATC	3 cut(s)	163, 304, 680
Bst2UI	CCWGG	3 cut(s)	371, 438, 481
BstAFI	CTTAAG	1 cut(s)	229
BstAUI	TGTACA	1 cut(s)	148
BstDEI	CTNAG	2 cut(s)	205, 383
BstF5I	GGATG	2 cut(s)	115, 490
BstH2I	RGCGCY	1 cut(s)	678
BstHHI	GCGC	1 cut(s)	677
BstKTI	GATC	3 cut(s)	166, 307, 683
BstMBI	GATC	3 cut(s)	163, 304, 680
BstMWI	GCNNNNNNNGC	1 cut(s)	485
BstNI	CCWGG	3 cut(s)	371, 438, 481
BstSCI	CCNGG	4 cut(s)	128, 369, 436, 479
BstSFI	CTRYAG	1 cut(s)	276
BstV1I	GCAGC	1 cut(s)	463
BstX2I	RGATCY	1 cut(s)	163
BstYI	RGATCY	1 cut(s)	163
BsuRI	GGCC	1 cut(s)	392
BtsCI	GGATG	2 cut(s)	115, 490
CfoI	GCGC	1 cut(s)	677
Cfr10I	RCCGGY	1 cut(s)	331
Cfr13I	GGNCC	3 cut(s)	154, 272, 443
Csp6I	GTAC	3 cut(s)	149, 399, 451
CspAI	ACCGGT	1 cut(s)	331
CviAII	CATG	3 cut(s)	376, 473, 584
CviJI	RGCY	8 cut(s)	225, 310, 382, 392, 426, 537, 610, 621
CviKI_1	RGCY	8 cut(s)	225, 310, 382, 392, 426, 537, 610, 621
CviQI	GTAC	3 cut(s)	149, 399, 451
DdeI	CTNAG	2 cut(s)	205, 383
DpnI	GATC	3 cut(s)	165, 306, 682
DpnII	GATC	3 cut(s)	163, 304, 680
DriI	GACNNNNNGTC	1 cut(s)	61
EaeI	YGGCCR	1 cut(s)	390
Eam1105I	GACNNNNNGTC	1 cut(s)	61
Eco47I	GGWCC	3 cut(s)	154, 272, 443
Eco47III	AGCGCT	1 cut(s)	676
EcoRII	CCWGG	3 cut(s)	369, 436, 479
FaeI	CATG	3 cut(s)	379, 476, 587
FaiI	YATR	8 cut(s)	191, 201, 377, 423, 474, 563, 570, 585
FatI	CATG	3 cut(s)	375, 472, 583
Fnu4HI	GCNGC	1 cut(s)	477
FokI	GGATG	2 cut(s)	122, 497
Fsp4HI	GCNGC	1 cut(s)	477
FspBI	CTAG	1 cut(s)	678
GlaI	GCGC	1 cut(s)	676
GluI	GCNGC	1 cut(s)	477
GsuI	CTGGAG	1 cut(s)	353
HaeII	RGCGCY	1 cut(s)	678
HaeIII	GGCC	1 cut(s)	392
HapII	CCGG	2 cut(s)	130, 332
HhaI	GCGC	1 cut(s)	677
Hin1II	CATG	3 cut(s)	379, 476, 587
Hin6I	GCGC	1 cut(s)	675
HinP1I	GCGC	1 cut(s)	675
HincII	GTYRAC	1 cut(s)	211
HindII	GTYRAC	1 cut(s)	211
HinfI	GANTC	1 cut(s)	83
HpaII	CCGG	2 cut(s)	130, 332
Hpy166II	GTNNAC	1 cut(s)	211
Hpy188I	TCNGA	1 cut(s)	697
Hpy188III	TCNNGA	4 cut(s)	104, 515, 540, 578
Hpy8I	GTNNAC	1 cut(s)	211
HpyAV	CCTTC	1 cut(s)	316
HpyCH4V	TGCA	4 cut(s)	40, 48, 278, 302
HpyF10VI	GCNNNNNNNGC	1 cut(s)	485
HpyF3I	CTNAG	2 cut(s)	205, 383
Hsp92II	CATG	3 cut(s)	379, 476, 587
HspAI	GCGC	1 cut(s)	675
Kzo9I	GATC	3 cut(s)	163, 304, 680
LmnI	GCTCC	4 cut(s)	345, 379, 580, 672
Lsp1109I	GCAGC	1 cut(s)	463
LweI	GCATC	1 cut(s)	475
MaeI	CTAG	1 cut(s)	678
MaeIII	GTNAC	2 cut(s)	564, 645
MalI	GATC	3 cut(s)	165, 306, 682
MboI	GATC	3 cut(s)	163, 304, 680
MboII	GAAGA	1 cut(s)	92
MfeI	CAATTG	1 cut(s)	26
MflI	RGATCY	1 cut(s)	163
MlsI	TGGCCA	1 cut(s)	392
MluCI	AATT	4 cut(s)	26, 141, 317, 626
MluNI	TGGCCA	1 cut(s)	392
MnlI	CCTC	2 cut(s)	98, 100
Mox20I	TGGCCA	1 cut(s)	392
MscI	TGGCCA	1 cut(s)	392
MseI	TTAA	4 cut(s)	134, 230, 360, 407
Msp20I	TGGCCA	1 cut(s)	392
MspCI	CTTAAG	1 cut(s)	229
MspI	CCGG	2 cut(s)	130, 332
MspR9I	CCNGG	4 cut(s)	130, 371, 438, 481
MunI	CAATTG	1 cut(s)	26
MvaI	CCWGG	3 cut(s)	371, 438, 481
MwoI	GCNNNNNNNGC	1 cut(s)	485
NciI	CCSGG	1 cut(s)	130
NdeII	GATC	3 cut(s)	163, 304, 680
NlaIII	CATG	3 cut(s)	379, 476, 587
NlaIV	GGNNCC	1 cut(s)	330
PfeI	GAWTC	1 cut(s)	83
PflMI	CCANNNNNTGG	1 cut(s)	376
PinAI	ACCGGT	1 cut(s)	331
PkrI	GCNGC	1 cut(s)	478
PsiI	TTATAA	1 cut(s)	201
Psp6I	CCWGG	3 cut(s)	369, 436, 479
PspGI	CCWGG	3 cut(s)	369, 436, 479
PspN4I	GGNNCC	1 cut(s)	330
PspPI	GGNCC	3 cut(s)	154, 272, 443
PstI	CTGCAG	1 cut(s)	280
PsuI	RGATCY	1 cut(s)	163
RsaI	GTAC	3 cut(s)	150, 400, 452
RsaNI	GTAC	3 cut(s)	149, 399, 451
SaqAI	TTAA	4 cut(s)	134, 230, 360, 407
SatI	GCNGC	1 cut(s)	477
Sau3AI	GATC	3 cut(s)	163, 304, 680
Sau96I	GGNCC	3 cut(s)	154, 272, 443
ScrFI	CCNGG	4 cut(s)	130, 371, 438, 481
SfaNI	GCATC	1 cut(s)	475
SfcI	CTRYAG	1 cut(s)	276
SinI	GGWCC	3 cut(s)	154, 272, 443
SmlI	CTYRAG	4 cut(s)	104, 218, 229, 538
SmoI	CTYRAG	4 cut(s)	104, 218, 229, 538
Sse9I	AATT	4 cut(s)	26, 141, 317, 626
SspMI	CTAG	1 cut(s)	678
StyD4I	CCNGG	4 cut(s)	128, 369, 436, 479
TasI	AATT	4 cut(s)	26, 141, 317, 626
TatI	WGTACW	2 cut(s)	148, 398
TfiI	GAWTC	1 cut(s)	83
Tru1I	TTAA	4 cut(s)	134, 230, 360, 407
Tru9I	TTAA	4 cut(s)	134, 230, 360, 407
TseI	GCWGC	1 cut(s)	476
TspDTI	ATGAA	1 cut(s)	600
Van91I	CCANNNNNTGG	1 cut(s)	376
Vha464I	CTTAAG	1 cut(s)	229
VpaK11BI	GGWCC	3 cut(s)	154, 272, 443
XapI	RAATTY	2 cut(s)	141, 626
XspI	CTAG	1 cut(s)	678

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.