Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0003929

Physical Location & Seq

Genomic Coordinates Reverse (-)

71914123 .. 71933685

Gene Structure 19563 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG417200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 819 bp

ATGCCGCAAGCTTCTTTCACGCCTCGAAGCTCTGCCTATCTCGACGCTCTCACCCAAGAAATCGAGAAGAAACTCCAGCGGGCCCTAGCTTCTCCCTCACTGCGCCGCAACTTGTTGCAGGAGTTGTTTACTGACATTGCCTTAGAGATTGATGAGCGGGCCAAAGATATAATTCTCAGCCCGGAAGATGATGCAATTTCTCCTGCAGAGGATTGCAATTATGGTCAGCTATGCTTTCATGATGTACTTGCTGACTATTATGTTTGGGTGCCTGAGAGTGGAAAACGCATCCTTGATCTGATTGTCCAACTCTGGAGCCAGTCATTTGCATCTCACATTTTCGCCTTGTTATTTCACAAATGGCTTTTTGAAGTTCAACTTGACAACTCTGAAGTCCTTCTACGATTCTCATCTGCTCTTGTTCAAGGTGCTACAAACGTTTTCTGGATTGACATTCAGTCAAATACAAGGCGGTTTGAATCCCTCTTTCTTTATCTTCTTGAGGATGTTGCTTTGGAACCCACCCGGTTAAATAAAATTCCTGTACAGGTCCAGCGAGATCTGTATCTTTTACTTTCAAGGTTTATATTCTTTTATAACTCAGTTGACAAACTTGAGAGCTTCTTAAGGCACTTTCCCGTTTTCCCGAATGCTTTTCTGGTTGGTGGTCCTGCAGACTTCTTTGTTATTGAACTTGCAGATCAGGTAAATTTTGAAAAATTCTCTGGACTTCAGGAGCATGTTTTTTTCCTCAAGTTATTTCCTATTGTTAGCATATTGCATTCGTACAAATATAGTTTTCCGTTTAAAATGAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

272

Amino Acids

31.61

Weight (kDa)

5.08

Isoelectric Point (pI)

60.66

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003929)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G59960 AT5G59960 AT5G59960
fragaria_vesca	FvH4_3g35470 FvH4_3g35470
malus_domestica	MD03G1097100.v1.1 MD11G1143700.v1.1
prunus_persica	Prupe.4G098100_v2.0.a1 Prupe.6G081500_v2.0.a1 Prupe.6G081500_v2.0.a1 Prupe.6G081500_v2.0.a1
pyrus_communis	pycom03g08010 pycom11g09330
rosa_chinensis	RchiOBHm_Chr1g0369801 RchiOBHm_Chr5g0063631
rosa_laevigata	RLG00000029314 RLG00000035658
rosa_multiflora	Rmu_sc0000368.1_g000040 Rmu_ssc0000309.1_g000060
rosa_roxburghii	Rroxscaffold_1G00017170 Rroxscaffold_2G00129250
rosa_rugosa	Rorug05G0358400 Rorug05G0358500 Rorug05G0358500 Rorug05G0358600
rosa_samantha	Rh2CG479400 Rh3DG316400 Rh5AG417200 Rh5BG432800 Rh5CG456000 Rh5DG446200 Rh6CG100700
rosa_wichuraiana	Rw3G025090 Rw5G039210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	597
AccB1I	GGYRCC	1 cut(s)	268
AccBSI	CCGCTC	1 cut(s)	157
AciI	CCGC	5 cut(s)	5, 79, 106, 157, 472
AclI	AACGTT	1 cut(s)	438
AcsI	RAATTY	3 cut(s)	537, 709, 719
AcuI	CTGAAG	2 cut(s)	411, 716
AfaI	GTAC	3 cut(s)	246, 546, 788
AfiI	CCNNNNNNNGG	1 cut(s)	278
AflII	CTTAAG	1 cut(s)	625
AgsI	TTSAA	7 cut(s)	371, 377, 425, 479, 579, 692, 716
AhdI	GACNNNNNGTC	1 cut(s)	457
AluBI	AGCT	5 cut(s)	11, 30, 89, 229, 621
AluI	AGCT	5 cut(s)	11, 30, 89, 229, 621
AoxI	GGCC	2 cut(s)	81, 159
ApaI	GGGCCC	1 cut(s)	85
ApoI	RAATTY	3 cut(s)	537, 709, 719
Asp700I	GAANNNNTTC	1 cut(s)	396
AspLEI	GCGC	1 cut(s)	105
AspS9I	GGNCC	5 cut(s)	81, 82, 159, 550, 668
AsuC2I	CCSGG	2 cut(s)	182, 526
AsuHPI	GGTGA	1 cut(s)	43
AvaII	GGWCC	2 cut(s)	550, 668
BaeGI	GKGCMC	1 cut(s)	85
BanI	GGYRCC	1 cut(s)	268
BanII	GRGCYC	1 cut(s)	85
BarI	GAAGNNNNNNTAC	2 cut(s)	384, 416
BcnI	CCSGG	2 cut(s)	182, 526
BfaI	CTAG	1 cut(s)	86
BfmI	CTRYAG	2 cut(s)	204, 672
BfrI	CTTAAG	1 cut(s)	625
BglII	AGATCT	1 cut(s)	559
BisI	GCNGC	2 cut(s)	5, 106
BlsI	GCNGC	2 cut(s)	6, 107
Bme1390I	CCNGG	2 cut(s)	182, 526
Bme18I	GGWCC	2 cut(s)	550, 668
BmeRI	GACNNNNNGTC	1 cut(s)	457
BmgT120I	GGNCC	5 cut(s)	81, 82, 159, 550, 668
BmiI	GGNNCC	4 cut(s)	83, 270, 317, 519
BmrFI	CCNGG	2 cut(s)	182, 526
BmsI	GCATC	3 cut(s)	181, 297, 338
BpmI	CTGGAG	2 cut(s)	59, 334
BpuEI	CTTGAG	3 cut(s)	521, 635, 737
BpuMI	CCSGG	2 cut(s)	182, 526
BsaBI	GATNNNNATC	2 cut(s)	409, 564
Bsc4I	CCNNNNNNNGG	1 cut(s)	278
Bse1I	ACTGG	1 cut(s)	319
Bse3DI	GCAATG	1 cut(s)	135
Bse8I	GATNNNNATC	2 cut(s)	409, 564
BseGI	GGATG	2 cut(s)	288, 511
BseJI	GATNNNNATC	2 cut(s)	409, 564
BseLI	CCNNNNNNNGG	1 cut(s)	278
BseMI	GCAATG	1 cut(s)	135
BseMII	CTCAG	3 cut(s)	190, 264, 615
BseNI	ACTGG	1 cut(s)	319
BseSI	GKGCMC	1 cut(s)	85
BshFI	GGCC	2 cut(s)	83, 161
BshNI	GGYRCC	1 cut(s)	268
BsiSI	CCGG	2 cut(s)	182, 526
BslI	CCNNNNNNNGG	1 cut(s)	278
BsmI	GAATGC	2 cut(s)	655, 781
BsnI	GGCC	2 cut(s)	83, 161
Bsp120I	GGGCCC	1 cut(s)	81
Bsp1286I	GDGCHC	1 cut(s)	85
Bsp1407I	TGTACA	1 cut(s)	544
Bsp143I	GATC	3 cut(s)	295, 559, 700
BspACI	CCGC	5 cut(s)	5, 79, 106, 157, 472
BspANI	GGCC	2 cut(s)	83, 161
BspCNI	CTCAG	3 cut(s)	189, 265, 614
BspHI	TCATGA	1 cut(s)	238
BspLI	GGNNCC	4 cut(s)	83, 270, 317, 519
BspMAI	CTGCAG	2 cut(s)	208, 676
BspT107I	GGYRCC	1 cut(s)	268
BspTI	CTTAAG	1 cut(s)	625
BsrBI	CCGCTC	1 cut(s)	157
BsrDI	GCAATG	1 cut(s)	135
BsrGI	TGTACA	1 cut(s)	544
BsrI	ACTGG	1 cut(s)	319
BssMI	GATC	3 cut(s)	295, 559, 700
BstAFI	CTTAAG	1 cut(s)	625
BstAUI	TGTACA	1 cut(s)	544
BstC8I	GCNNGC	3 cut(s)	9, 81, 159
BstDEI	CTNAG	4 cut(s)	142, 176, 273, 601
BstF5I	GGATG	2 cut(s)	288, 511
BstHHI	GCGC	1 cut(s)	105
BstKTI	GATC	3 cut(s)	298, 562, 703
BstMBI	GATC	3 cut(s)	295, 559, 700
BstNSI	RCATGY	1 cut(s)	743
BstSCI	CCNGG	2 cut(s)	180, 524
BstSFI	CTRYAG	2 cut(s)	204, 672
BstSLI	GKGCMC	1 cut(s)	85
BstX2I	RGATCY	1 cut(s)	559
BstYI	RGATCY	1 cut(s)	559
BsuRI	GGCC	2 cut(s)	83, 161
BtsCI	GGATG	2 cut(s)	288, 511
BtsI	GCAGTG	1 cut(s)	98
BtsIMutI	CAGTG	1 cut(s)	98
Cac8I	GCNNGC	3 cut(s)	9, 81, 159
CciI	TCATGA	1 cut(s)	238
CfoI	GCGC	1 cut(s)	105
Cfr13I	GGNCC	5 cut(s)	81, 82, 159, 550, 668
CseI	GACGC	1 cut(s)	53
Csp6I	GTAC	3 cut(s)	245, 545, 787
CviAII	CATG	2 cut(s)	239, 740
CviQI	GTAC	3 cut(s)	245, 545, 787
DdeI	CTNAG	4 cut(s)	142, 176, 273, 601
DpnI	GATC	3 cut(s)	297, 561, 702
DpnII	GATC	3 cut(s)	295, 559, 700
DraI	TTTAAA	1 cut(s)	808
DriI	GACNNNNNGTC	1 cut(s)	457
Eam1105I	GACNNNNNGTC	1 cut(s)	457
Eco24I	GRGCYC	1 cut(s)	85
Eco47I	GGWCC	2 cut(s)	550, 668
Eco57I	CTGAAG	2 cut(s)	411, 716
EcoO109I	RGGNCCY	1 cut(s)	82
EcoT38I	GRGCYC	1 cut(s)	85
FaeI	CATG	2 cut(s)	242, 743
FalI	AAGNNNNNCTT	2 cut(s)	363, 395
FatI	CATG	2 cut(s)	238, 739
FauI	CCCGC	2 cut(s)	72, 150
Fnu4HI	GCNGC	2 cut(s)	5, 106
FokI	GGATG	2 cut(s)	275, 518
FriOI	GRGCYC	1 cut(s)	85
Fsp4HI	GCNGC	2 cut(s)	5, 106
FspBI	CTAG	1 cut(s)	86
GlaI	GCGC	1 cut(s)	104
GluI	GCNGC	2 cut(s)	5, 106
GsuI	CTGGAG	2 cut(s)	59, 334
HaeIII	GGCC	2 cut(s)	83, 161
HapII	CCGG	2 cut(s)	182, 526
HgaI	GACGC	1 cut(s)	53
HhaI	GCGC	1 cut(s)	105
Hin1II	CATG	2 cut(s)	242, 743
Hin6I	GCGC	1 cut(s)	103
HinP1I	GCGC	1 cut(s)	103
HincII	GTYRAC	1 cut(s)	607
HindII	GTYRAC	1 cut(s)	607
HindIII	AAGCTT	1 cut(s)	9
HinfI	GANTC	2 cut(s)	405, 479
HpaII	CCGG	2 cut(s)	182, 526
HphI	GGTGA	1 cut(s)	43
Hpy166II	GTNNAC	2 cut(s)	129, 607
Hpy188I	TCNGA	2 cut(s)	300, 391
Hpy188III	TCNNGA	9 cut(s)	41, 64, 239, 313, 445, 500, 646, 726, 734
Hpy8I	GTNNAC	2 cut(s)	129, 607
Hpy99I	CGWCG	1 cut(s)	47
HpyAV	CCTTC	1 cut(s)	407
HpyCH4IV	ACGT	1 cut(s)	438
HpyCH4V	TGCA	8 cut(s)	118, 194, 206, 216, 329, 674, 698, 781
HpyF3I	CTNAG	4 cut(s)	142, 176, 273, 601
HpySE526I	ACGT	1 cut(s)	438
Hsp92II	CATG	2 cut(s)	242, 743
HspAI	GCGC	1 cut(s)	103
Kzo9I	GATC	3 cut(s)	295, 559, 700
LmnI	GCTCC	2 cut(s)	315, 736
LweI	GCATC	3 cut(s)	181, 297, 338
MaeI	CTAG	1 cut(s)	86
MaeII	ACGT	1 cut(s)	438
MalI	GATC	3 cut(s)	297, 561, 702
MbiI	CCGCTC	1 cut(s)	157
MboI	GATC	3 cut(s)	295, 559, 700
MboII	GAAGA	3 cut(s)	79, 197, 488
MflI	RGATCY	1 cut(s)	559
MhlI	GDGCHC	1 cut(s)	85
MluCI	AATT	6 cut(s)	171, 195, 217, 537, 709, 719
MmeI	TCCRAC	1 cut(s)	331
MnlI	CCTC	6 cut(s)	33, 106, 202, 494, 496, 761
MroXI	GAANNNNTTC	1 cut(s)	396
MseI	TTAA	3 cut(s)	530, 626, 807
MspA1I	CMGCKG	1 cut(s)	79
MspCI	CTTAAG	1 cut(s)	625
MspI	CCGG	2 cut(s)	182, 526
MspR9I	CCNGG	2 cut(s)	182, 526
Mva1269I	GAATGC	2 cut(s)	655, 781
NciI	CCSGG	2 cut(s)	182, 526
NdeII	GATC	3 cut(s)	295, 559, 700
NlaIII	CATG	2 cut(s)	242, 743
NlaIV	GGNNCC	4 cut(s)	83, 270, 317, 519
NspI	RCATGY	1 cut(s)	743
PagI	TCATGA	1 cut(s)	238
PctI	GAATGC	2 cut(s)	655, 781
PdmI	GAANNNNTTC	1 cut(s)	396
PfeI	GAWTC	2 cut(s)	405, 479
PkrI	GCNGC	2 cut(s)	6, 107
PsiI	TTATAA	1 cut(s)	597
Psp1406I	AACGTT	1 cut(s)	438
PspN4I	GGNNCC	4 cut(s)	83, 270, 317, 519
PspOMI	GGGCCC	1 cut(s)	81
PspPI	GGNCC	5 cut(s)	81, 82, 159, 550, 668
PstI	CTGCAG	2 cut(s)	208, 676
PsuI	RGATCY	1 cut(s)	559
RsaI	GTAC	3 cut(s)	246, 546, 788
RsaNI	GTAC	3 cut(s)	245, 545, 787
SaqAI	TTAA	3 cut(s)	530, 626, 807
SatI	GCNGC	2 cut(s)	5, 106
Sau3AI	GATC	3 cut(s)	295, 559, 700
Sau96I	GGNCC	5 cut(s)	81, 82, 159, 550, 668
ScrFI	CCNGG	2 cut(s)	182, 526
SduI	GDGCHC	1 cut(s)	85
SfaNI	GCATC	3 cut(s)	181, 297, 338
SfcI	CTRYAG	2 cut(s)	204, 672
SinI	GGWCC	2 cut(s)	550, 668
SmlI	CTYRAG	4 cut(s)	500, 614, 625, 752
SmoI	CTYRAG	4 cut(s)	500, 614, 625, 752
Sse9I	AATT	6 cut(s)	171, 195, 217, 537, 709, 719
SsiI	CCGC	5 cut(s)	5, 79, 106, 157, 472
SspMI	CTAG	1 cut(s)	86
StyD4I	CCNGG	2 cut(s)	180, 524
TaiI	ACGT	1 cut(s)	441
TaqI	TCGA	3 cut(s)	25, 42, 63
TasI	AATT	6 cut(s)	171, 195, 217, 537, 709, 719
TatI	WGTACW	2 cut(s)	244, 544
TauI	GCSGC	2 cut(s)	7, 108
TfiI	GAWTC	2 cut(s)	405, 479
Tru1I	TTAA	3 cut(s)	530, 626, 807
Tru9I	TTAA	3 cut(s)	530, 626, 807
TscAI	CASTG	1 cut(s)	105
TspDTI	ATGAA	1 cut(s)	227
TspGWI	ACGGA	1 cut(s)	792
TspRI	CASTG	1 cut(s)	105
Vha464I	CTTAAG	1 cut(s)	625
VpaK11BI	GGWCC	2 cut(s)	550, 668
XapI	RAATTY	3 cut(s)	537, 709, 719
XceI	RCATGY	1 cut(s)	743
XmnI	GAANNNNTTC	1 cut(s)	396
XspI	CTAG	1 cut(s)	86

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.