Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000309.1

Orthogroup ID

OG0003929

Physical Location & Seq

Genomic Coordinates Forward (+)

272460 .. 273924

Gene Structure 1465 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000309.1_g000060.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 492 bp

atggtagcaatcaatcctctagttttctttgggcagctttttgaagttcaacttgacaactctgaagtccttctacgattctcatctgctcttgttcaaggtgctacaaacgttttctggattgacattcagtcaaatacaaggcggtttgaatccctctttctttatcttcttgaggatgttgctttggaacccacccggttaaataaaattcctgtacaggtccagcgagatctgtatcttttactttcaaggtttatattcttttataactcagttgacaaacttgagagcttcttaaggcactttcccgtattcccgaatgcttttctggttggtggtcctgcagacttctttgttattgaacttgcagatcagcttcaaaaattgaaggtggaaccggtattgctccattacttttcacacattaaagttctccagggtaatatttttaaccattttacatcgtttatgattcaaagattcatatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

163

Amino Acids

19.08

Weight (kDa)

6.05

Isoelectric Point (pI)

43.54

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003929)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G59960 AT5G59960 AT5G59960
fragaria_vesca	FvH4_3g35470 FvH4_3g35470
malus_domestica	MD03G1097100.v1.1 MD11G1143700.v1.1
prunus_persica	Prupe.4G098100_v2.0.a1 Prupe.6G081500_v2.0.a1 Prupe.6G081500_v2.0.a1 Prupe.6G081500_v2.0.a1
pyrus_communis	pycom03g08010 pycom11g09330
rosa_chinensis	RchiOBHm_Chr1g0369801 RchiOBHm_Chr5g0063631
rosa_laevigata	RLG00000029314 RLG00000035658
rosa_multiflora	Rmu_sc0000368.1_g000040 Rmu_ssc0000309.1_g000060
rosa_roxburghii	Rroxscaffold_1G00017170 Rroxscaffold_2G00129250
rosa_rugosa	Rorug05G0358400 Rorug05G0358500 Rorug05G0358500 Rorug05G0358600
rosa_samantha	Rh2CG479400 Rh3DG316400 Rh5AG417200 Rh5BG432800 Rh5CG456000 Rh5DG446200 Rh6CG100700
rosa_wichuraiana	Rw3G025090 Rw5G039210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	270
AciI	CCGC	1 cut(s)	145
AclI	AACGTT	1 cut(s)	111
AcsI	RAATTY	1 cut(s)	210
AcuI	CTGAAG	1 cut(s)	84
AfaI	GTAC	1 cut(s)	219
AflII	CTTAAG	1 cut(s)	298
AgeI	ACCGGT	1 cut(s)	400
AgsI	TTSAA	9 cut(s)	44, 50, 98, 152, 252, 365, 383, 391, 479
AhdI	GACNNNNNGTC	1 cut(s)	130
AjnI	CCWGG	1 cut(s)	438
AluBI	AGCT	3 cut(s)	37, 294, 379
AluI	AGCT	3 cut(s)	37, 294, 379
ApeKI	GCWGC	1 cut(s)	34
ApoI	RAATTY	1 cut(s)	210
AsiGI	ACCGGT	1 cut(s)	400
Asp700I	GAANNNNTTC	1 cut(s)	69
AspS9I	GGNCC	2 cut(s)	223, 341
AsuC2I	CCSGG	1 cut(s)	199
AvaII	GGWCC	2 cut(s)	223, 341
BarI	GAAGNNNNNNTAC	2 cut(s)	57, 89
BbvI	GCAGC	1 cut(s)	46
BciT130I	CCWGG	1 cut(s)	440
BcnI	CCSGG	1 cut(s)	199
BfaI	CTAG	1 cut(s)	20
BfmI	CTRYAG	1 cut(s)	345
BfrI	CTTAAG	1 cut(s)	298
BglII	AGATCT	1 cut(s)	232
BisI	GCNGC	1 cut(s)	35
BlsI	GCNGC	1 cut(s)	36
Bme1390I	CCNGG	2 cut(s)	199, 440
Bme18I	GGWCC	2 cut(s)	223, 341
BmeRI	GACNNNNNGTC	1 cut(s)	130
BmgT120I	GGNCC	2 cut(s)	223, 341
BmiI	GGNNCC	2 cut(s)	192, 399
BmrFI	CCNGG	2 cut(s)	199, 440
BpmI	CTGGAG	1 cut(s)	422
BpuEI	CTTGAG	2 cut(s)	194, 308
BpuMI	CCSGG	1 cut(s)	199
BsaBI	GATNNNNATC	2 cut(s)	82, 237
BsaJI	CCNNGG	1 cut(s)	439
BsaWI	WCCGGW	1 cut(s)	400
Bse118I	RCCGGY	1 cut(s)	400
Bse8I	GATNNNNATC	2 cut(s)	82, 237
BseBI	CCWGG	1 cut(s)	440
BseDI	CCNNGG	1 cut(s)	439
BseGI	GGATG	1 cut(s)	184
BseJI	GATNNNNATC	2 cut(s)	82, 237
BseMII	CTCAG	1 cut(s)	288
BseXI	GCAGC	1 cut(s)	46
BshTI	ACCGGT	1 cut(s)	400
BsiSI	CCGG	2 cut(s)	199, 401
BsmI	GAATGC	1 cut(s)	328
Bsp1407I	TGTACA	1 cut(s)	217
Bsp143I	GATC	2 cut(s)	232, 373
BspACI	CCGC	1 cut(s)	145
BspCNI	CTCAG	1 cut(s)	287
BspLI	GGNNCC	2 cut(s)	192, 399
BspMAI	CTGCAG	1 cut(s)	349
BspTI	CTTAAG	1 cut(s)	298
BsrFI	RCCGGY	1 cut(s)	400
BsrGI	TGTACA	1 cut(s)	217
BssAI	RCCGGY	1 cut(s)	400
BssECI	CCNNGG	1 cut(s)	439
BssMI	GATC	2 cut(s)	232, 373
Bst2UI	CCWGG	1 cut(s)	440
BstAFI	CTTAAG	1 cut(s)	298
BstAUI	TGTACA	1 cut(s)	217
BstDEI	CTNAG	1 cut(s)	274
BstF5I	GGATG	1 cut(s)	184
BstKTI	GATC	2 cut(s)	235, 376
BstMBI	GATC	2 cut(s)	232, 373
BstNI	CCWGG	1 cut(s)	440
BstSCI	CCNGG	2 cut(s)	197, 438
BstSFI	CTRYAG	1 cut(s)	345
BstV1I	GCAGC	1 cut(s)	46
BstX2I	RGATCY	1 cut(s)	232
BstYI	RGATCY	1 cut(s)	232
BtsCI	GGATG	1 cut(s)	184
Cfr10I	RCCGGY	1 cut(s)	400
Cfr13I	GGNCC	2 cut(s)	223, 341
Csp6I	GTAC	1 cut(s)	218
CspAI	ACCGGT	1 cut(s)	400
CviJI	RGCY	3 cut(s)	37, 294, 379
CviKI_1	RGCY	3 cut(s)	37, 294, 379
CviQI	GTAC	1 cut(s)	218
DdeI	CTNAG	1 cut(s)	274
DpnI	GATC	2 cut(s)	234, 375
DpnII	GATC	2 cut(s)	232, 373
DriI	GACNNNNNGTC	1 cut(s)	130
Eam1105I	GACNNNNNGTC	1 cut(s)	130
Eco47I	GGWCC	2 cut(s)	223, 341
Eco57I	CTGAAG	1 cut(s)	84
EcoRII	CCWGG	1 cut(s)	438
FaiI	YATR	5 cut(s)	260, 270, 473, 488, 490
FalI	AAGNNNNNCTT	2 cut(s)	36, 68
FauNDI	CATATG	1 cut(s)	488
Fnu4HI	GCNGC	1 cut(s)	35
FokI	GGATG	1 cut(s)	191
Fsp4HI	GCNGC	1 cut(s)	35
FspBI	CTAG	1 cut(s)	20
GluI	GCNGC	1 cut(s)	35
GsuI	CTGGAG	1 cut(s)	422
HapII	CCGG	2 cut(s)	199, 401
HincII	GTYRAC	1 cut(s)	280
HindII	GTYRAC	1 cut(s)	280
HinfI	GANTC	4 cut(s)	78, 152, 475, 483
HpaII	CCGG	2 cut(s)	199, 401
Hpy166II	GTNNAC	1 cut(s)	280
Hpy188I	TCNGA	1 cut(s)	64
Hpy188III	TCNNGA	3 cut(s)	118, 173, 319
Hpy8I	GTNNAC	1 cut(s)	280
HpyAV	CCTTC	2 cut(s)	80, 385
HpyCH4IV	ACGT	1 cut(s)	111
HpyCH4V	TGCA	2 cut(s)	347, 371
HpyF3I	CTNAG	1 cut(s)	274
HpySE526I	ACGT	1 cut(s)	111
Kzo9I	GATC	2 cut(s)	232, 373
LmnI	GCTCC	1 cut(s)	414
Lsp1109I	GCAGC	1 cut(s)	46
MaeI	CTAG	1 cut(s)	20
MaeII	ACGT	1 cut(s)	111
MalI	GATC	2 cut(s)	234, 375
MboI	GATC	2 cut(s)	232, 373
MboII	GAAGA	1 cut(s)	161
MflI	RGATCY	1 cut(s)	232
MluCI	AATT	2 cut(s)	210, 386
MnlI	CCTC	3 cut(s)	27, 167, 169
MroXI	GAANNNNTTC	1 cut(s)	69
MseI	TTAA	4 cut(s)	203, 299, 429, 453
MspCI	CTTAAG	1 cut(s)	298
MspI	CCGG	2 cut(s)	199, 401
MspR9I	CCNGG	2 cut(s)	199, 440
Mva1269I	GAATGC	1 cut(s)	328
MvaI	CCWGG	1 cut(s)	440
NciI	CCSGG	1 cut(s)	199
NdeI	CATATG	1 cut(s)	488
NdeII	GATC	2 cut(s)	232, 373
NlaIV	GGNNCC	2 cut(s)	192, 399
PctI	GAATGC	1 cut(s)	328
PdmI	GAANNNNTTC	1 cut(s)	69
PfeI	GAWTC	4 cut(s)	78, 152, 475, 483
PinAI	ACCGGT	1 cut(s)	400
PkrI	GCNGC	1 cut(s)	36
PsiI	TTATAA	1 cut(s)	270
Psp1406I	AACGTT	1 cut(s)	111
Psp6I	CCWGG	1 cut(s)	438
PspGI	CCWGG	1 cut(s)	438
PspN4I	GGNNCC	2 cut(s)	192, 399
PspPI	GGNCC	2 cut(s)	223, 341
PstI	CTGCAG	1 cut(s)	349
PsuI	RGATCY	1 cut(s)	232
RsaI	GTAC	1 cut(s)	219
RsaNI	GTAC	1 cut(s)	218
SaqAI	TTAA	4 cut(s)	203, 299, 429, 453
SatI	GCNGC	1 cut(s)	35
Sau3AI	GATC	2 cut(s)	232, 373
Sau96I	GGNCC	2 cut(s)	223, 341
ScrFI	CCNGG	2 cut(s)	199, 440
SetI	ASST	8 cut(s)	39, 103, 114, 225, 257, 296, 381, 396
SfcI	CTRYAG	1 cut(s)	345
SinI	GGWCC	2 cut(s)	223, 341
SmlI	CTYRAG	3 cut(s)	173, 287, 298
SmoI	CTYRAG	3 cut(s)	173, 287, 298
Sse9I	AATT	2 cut(s)	210, 386
SsiI	CCGC	1 cut(s)	145
SspI	AATATT	1 cut(s)	448
SspMI	CTAG	1 cut(s)	20
StyD4I	CCNGG	2 cut(s)	197, 438
TaiI	ACGT	1 cut(s)	114
TasI	AATT	2 cut(s)	210, 386
TatI	WGTACW	1 cut(s)	217
TfiI	GAWTC	4 cut(s)	78, 152, 475, 483
Tru1I	TTAA	4 cut(s)	203, 299, 429, 453
Tru9I	TTAA	4 cut(s)	203, 299, 429, 453
TseI	GCWGC	1 cut(s)	34
TspDTI	ATGAA	1 cut(s)	475
Vha464I	CTTAAG	1 cut(s)	298
VpaK11BI	GGWCC	2 cut(s)	223, 341
XapI	RAATTY	1 cut(s)	210
XmnI	GAANNNNTTC	1 cut(s)	69
XspI	CTAG	1 cut(s)	20

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.