MD11G1143700.v1.1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr11
OG0003929
Physical Location & Seq
Forward (+)
13373525 .. 13377868
4344 bp
Loading structure...
UTR
Exon/CDS
Intron
MD11G1143700.v1.1.491

Sequence Viewer

Length: 1074 bp
ATGTCTCAAGCTTCTTCCTCGCCTCGAAGCTCTGCATATCTCGACGCACTGACGCAAGAGATCGAGAAGAAGCTCCAGCGGGCGCTGGCTTCTCCGTCGCAGCGGCGGAATTTGTTGCAGGAGTTGTTTGCTGACATAGCTTTGGAGATCGATGAGCGAGCCAAAGAAATGATTCTCAGCAGGGAAGAGGATGCAATTTCTCCTGCTGAGGATGGCATTGAAGGTCAGCTTTGCTTTTATGATGTGCTCACTGATCACTATGTTCGGGTGCCTGAGAATGGAAAACGCATCCTTGATTTGATTGTCCAACTTTGGAGCCAGTCATTTGCATCTCATATTTTTGCCTTGTTGTTCCACAAATGGCTGTTTGAGGTTCAACTTGACAACTCTGAAGTACTTCTTCGTTACTCATCTGCTCTTGTTGAAGGTGCAACAAATGTTTTCTGGATTGATACTCAATCAAATGCAAGGCGATTCCAATCCCTCTTTTGTTATCTGCTTGAGGATGTTGCTTTGGAGCCCAAACGGTTAAATAAAATTCCTGTACAGGTCCAGCGAGATCTATTTCTTTTACTCTCGAGGTTTATAATTTTTTATAACTCAGTTGACAAGCTCGACAGCTTCTTAAGGGAATTTCCTCATTTTCCGAACGCTTTTTTGATTGGTAGTTCAGCAGACTTCTTTGTTATTGAACTAGCAGATCAGCTTCAAAAACTGAAGGTGGAACCAGTATTGCTGCATTACCTTTCATACATAAAAGTTCTCCAGGGAATGGAGCTGAGAATGGCCACAAGCACAAGGTTAAAGGCTTGTCTGTATAGCTTCACTTCTCCTGGAGGTCCAATGTACCCTACAAGAGCTGTTCGTCATGCGGCATGGGATGCATTAGATTTGCTTTTTCCTGTTGGCAGATACCCGCGGCATCTCATAAGCCTGTTCTTCCGATTGCTATATCCATGGTACTGGCCCGCTTCTTGTTGGAATTTCGTCATGGATTGCGTAAAGGCGGTATTGTATTCTCTGTTAGGATTAATCTACTCAAGTTTGGGGAAGCTGAGAAAGCCAAAGTTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

358

Amino Acids

41.3

Weight (kDa)

7.05

Isoelectric Point (pI)

61.35

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 587, 597
AccB1I GGYRCC 1 cut(s) 268
AccB7I CCANNNNNTGG 1 cut(s) 772
AccII CGCG 1 cut(s) 919
AciI CCGC 8 cut(s) 79, 103, 106, 872, 917, 919, 969, 1007
AcoI YGGCCR 1 cut(s) 786
AcsI RAATTY 4 cut(s) 109, 537, 632, 982
AcuI CTGAAG 2 cut(s) 411, 737
AfaI GTAC 4 cut(s) 396, 546, 848, 962
AfiI CCNNNNNNNGG 2 cut(s) 278, 772
AflII CTTAAG 1 cut(s) 625
AgsI TTSAA 5 cut(s) 221, 377, 425, 692, 710
AjnI CCWGG 2 cut(s) 765, 832
Alw21I GWGCWC 1 cut(s) 249
Alw26I GTCTC 1 cut(s) 9
Ama87I CYCGRG 1 cut(s) 577
AoxI GGCC 2 cut(s) 786, 965
ApeKI GCWGC 2 cut(s) 100, 736
ApoI RAATTY 4 cut(s) 109, 537, 632, 982
AseI ATTAAT 1 cut(s) 1031
Asp700I GAANNNNTTC 2 cut(s) 171, 396
AspLEI GCGC 1 cut(s) 85
AspS9I GGNCC 3 cut(s) 550, 839, 966
AvaI CYCGRG 1 cut(s) 577
AvaII GGWCC 2 cut(s) 550, 839
BalI TGGCCA 1 cut(s) 788
BanI GGYRCC 1 cut(s) 268
BanII GRGCYC 1 cut(s) 522
Bbv12I GWGCWC 1 cut(s) 249
BbvCI CCTCAGC 1 cut(s) 207
BbvI GCAGC 2 cut(s) 112, 723
BccI CCATC 1 cut(s) 206
BciT130I CCWGG 2 cut(s) 767, 834
BclI TGATCA 1 cut(s) 253
BcoDI GTCTC 1 cut(s) 9
BfaI CTAG 1 cut(s) 695
BfoI RGCGCY 1 cut(s) 86
BfrI CTTAAG 1 cut(s) 625
BglII AGATCT 1 cut(s) 559
BisI GCNGC 5 cut(s) 101, 104, 737, 873, 920
BlsI GCNGC 5 cut(s) 102, 105, 738, 874, 921
BmcAI AGTACT 1 cut(s) 396
Bme1390I CCNGG 2 cut(s) 767, 834
Bme18I GGWCC 2 cut(s) 550, 839
BmeT110I CYCGRG 1 cut(s) 577
BmgT120I GGNCC 3 cut(s) 550, 839, 966
BmiI GGNNCC 4 cut(s) 270, 317, 519, 726
BmrFI CCNGG 2 cut(s) 767, 834
BmsI GCATC 5 cut(s) 181, 297, 338, 871, 931
BpmI CTGGAG 3 cut(s) 59, 749, 855
Bpu10I CCTNAGC 1 cut(s) 207
BpuEI CTTGAG 2 cut(s) 521, 1024
Bsa29I ATCGAT 1 cut(s) 150
BsaBI GATNNNNATC 1 cut(s) 478
BsaJI CCNNGG 3 cut(s) 766, 917, 956
Bsc4I CCNNNNNNNGG 2 cut(s) 278, 772
Bse1I ACTGG 3 cut(s) 319, 728, 968
Bse8I GATNNNNATC 1 cut(s) 478
BseBI CCWGG 2 cut(s) 767, 834
BseCI ATCGAT 1 cut(s) 150
BseDI CCNNGG 3 cut(s) 766, 917, 956
BseGI GGATG 5 cut(s) 196, 217, 288, 511, 886
BseJI GATNNNNATC 1 cut(s) 478
BseLI CCNNNNNNNGG 2 cut(s) 278, 772
BseMII CTCAG 6 cut(s) 190, 198, 264, 615, 770, 1046
BseNI ACTGG 3 cut(s) 319, 728, 968
BseXI GCAGC 2 cut(s) 112, 723
Bsh1236I CGCG 1 cut(s) 919
BshFI GGCC 2 cut(s) 788, 967
BshNI GGYRCC 1 cut(s) 268
BshVI ATCGAT 1 cut(s) 150
BsiHKAI GWGCWC 1 cut(s) 249
BsiHKCI CYCGRG 1 cut(s) 577
BslI CCNNNNNNNGG 2 cut(s) 278, 772
BsmAI GTCTC 1 cut(s) 9
BsnI GGCC 2 cut(s) 788, 967
BsoBI CYCGRG 1 cut(s) 577
Bsp1286I GDGCHC 2 cut(s) 249, 522
Bsp1407I TGTACA 1 cut(s) 544
Bsp143I GATC 5 cut(s) 60, 147, 253, 559, 700
Bsp19I CCATGG 1 cut(s) 956
BspACI CCGC 8 cut(s) 79, 103, 106, 872, 917, 919, 969, 1007
BspANI GGCC 2 cut(s) 788, 967
BspCNI CTCAG 6 cut(s) 189, 199, 265, 614, 771, 1047
BspDI ATCGAT 1 cut(s) 150
BspFNI CGCG 1 cut(s) 919
BspLI GGNNCC 4 cut(s) 270, 317, 519, 726
BspT107I GGYRCC 1 cut(s) 268
BspTI CTTAAG 1 cut(s) 625
BsrGI TGTACA 1 cut(s) 544
BsrI ACTGG 3 cut(s) 319, 728, 968
BssECI CCNNGG 3 cut(s) 766, 917, 956
BssMI GATC 5 cut(s) 60, 147, 253, 559, 700
BssT1I CCWWGG 1 cut(s) 956
Bst2UI CCWGG 2 cut(s) 767, 834
Bst4CI ACNGT 1 cut(s) 528
Bst6I CTCTTC 1 cut(s) 180
BstAFI CTTAAG 1 cut(s) 625
BstAPI GCANNNNNTGC 1 cut(s) 881
BstAUI TGTACA 1 cut(s) 544
BstC8I GCNNGC 4 cut(s) 81, 87, 159, 969
BstDEI CTNAG 6 cut(s) 176, 207, 273, 601, 779, 1055
BstDSI CCRYGG 2 cut(s) 917, 956
BstF5I GGATG 5 cut(s) 196, 217, 288, 511, 886
BstFNI CGCG 1 cut(s) 919
BstH2I RGCGCY 1 cut(s) 86
BstHHI GCGC 1 cut(s) 85
BstKTI GATC 5 cut(s) 63, 150, 256, 562, 703
BstMAI GTCTC 1 cut(s) 9
BstMBI GATC 5 cut(s) 60, 147, 253, 559, 700
BstMWI GCNNNNNNNGC 3 cut(s) 137, 881, 1060
BstNI CCWGG 2 cut(s) 767, 834
BstSCI CCNGG 2 cut(s) 765, 832
BstUI CGCG 1 cut(s) 919
BstV1I GCAGC 2 cut(s) 112, 723
BstX2I RGATCY 1 cut(s) 559
BstXI CCANNNNNNTGG 1 cut(s) 963
BstYI RGATCY 1 cut(s) 559
Bsu15I ATCGAT 1 cut(s) 150
BsuRI GGCC 2 cut(s) 788, 967
BsuTUI ATCGAT 1 cut(s) 150
BtgI CCRYGG 2 cut(s) 917, 956
BtsCI GGATG 5 cut(s) 196, 217, 288, 511, 886
BtsIMutI CAGTG 2 cut(s) 47, 249
Cac8I GCNNGC 4 cut(s) 81, 87, 159, 969
CfoI GCGC 1 cut(s) 85
Cfr13I GGNCC 3 cut(s) 550, 839, 966
Cfr42I CCGCGG 1 cut(s) 920
ClaI ATCGAT 1 cut(s) 150
CseI GACGC 2 cut(s) 53, 61
Csp6I GTAC 4 cut(s) 395, 545, 847, 961
CviAII CATG 4 cut(s) 869, 876, 957, 991
CviQI GTAC 4 cut(s) 395, 545, 847, 961
DdeI CTNAG 6 cut(s) 176, 207, 273, 601, 779, 1055
DpnI GATC 5 cut(s) 62, 149, 255, 561, 702
DpnII GATC 5 cut(s) 60, 147, 253, 559, 700
EaeI YGGCCR 1 cut(s) 786
Eam1104I CTCTTC 1 cut(s) 180
EarI CTCTTC 1 cut(s) 180
EciI GGCGGA 1 cut(s) 121
Eco130I CCWWGG 1 cut(s) 956
Eco24I GRGCYC 1 cut(s) 522
Eco47I GGWCC 2 cut(s) 550, 839
Eco57I CTGAAG 2 cut(s) 411, 737
Eco88I CYCGRG 1 cut(s) 577
EcoRII CCWGG 2 cut(s) 765, 832
EcoT14I CCWWGG 1 cut(s) 956
EcoT22I ATGCAT 1 cut(s) 886
EcoT38I GRGCYC 1 cut(s) 522
ErhI CCWWGG 1 cut(s) 956
FaeI CATG 4 cut(s) 872, 879, 960, 994
FalI AAGNNNNNCTT 4 cut(s) 213, 245, 384, 416
FatI CATG 4 cut(s) 868, 875, 956, 990
FauI CCCGC 3 cut(s) 72, 924, 976
FbaI TGATCA 1 cut(s) 253
Fnu4HI GCNGC 5 cut(s) 101, 104, 737, 873, 920
FokI GGATG 5 cut(s) 203, 224, 275, 518, 893
FriOI GRGCYC 1 cut(s) 522
Fsp4HI GCNGC 5 cut(s) 101, 104, 737, 873, 920
FspBI CTAG 1 cut(s) 695
GlaI GCGC 1 cut(s) 84
GluI GCNGC 5 cut(s) 101, 104, 737, 873, 920
GsuI CTGGAG 3 cut(s) 59, 749, 855
HaeII RGCGCY 1 cut(s) 86
HaeIII GGCC 2 cut(s) 788, 967
HgaI GACGC 2 cut(s) 53, 61
HhaI GCGC 1 cut(s) 85
Hin1II CATG 4 cut(s) 872, 879, 960, 994
Hin6I GCGC 1 cut(s) 83
HinP1I GCGC 1 cut(s) 83
HincII GTYRAC 1 cut(s) 607
HindII GTYRAC 1 cut(s) 607
HindIII AAGCTT 1 cut(s) 9
HinfI GANTC 2 cut(s) 172, 474
Hpy166II GTNNAC 1 cut(s) 607
Hpy188I TCNGA 3 cut(s) 391, 648, 944
Hpy188III TCNNGA 4 cut(s) 41, 64, 445, 577
Hpy8I GTNNAC 1 cut(s) 607
Hpy99I CGWCG 2 cut(s) 47, 100
HpyAV CCTTC 3 cut(s) 215, 419, 712
HpyCH4III ACNGT 1 cut(s) 528
HpyCH4V TGCA 8 cut(s) 35, 118, 194, 329, 431, 467, 739, 884
HpyF10VI GCNNNNNNNGC 3 cut(s) 137, 881, 1060
HpyF3I CTNAG 6 cut(s) 176, 207, 273, 601, 779, 1055
Hsp92II CATG 4 cut(s) 872, 879, 960, 994
HspAI GCGC 1 cut(s) 83
Ksp22I TGATCA 1 cut(s) 253
KspI CCGCGG 1 cut(s) 920
Kzo9I GATC 5 cut(s) 60, 147, 253, 559, 700
LmnI GCTCC 4 cut(s) 78, 315, 517, 775
Lsp1109I GCAGC 2 cut(s) 112, 723
LweI GCATC 5 cut(s) 181, 297, 338, 871, 931
MaeI CTAG 1 cut(s) 695
MaeIII GTNAC 1 cut(s) 404
MalI GATC 5 cut(s) 62, 149, 255, 561, 702
MboI GATC 5 cut(s) 60, 147, 253, 559, 700
MboII GAAGA 5 cut(s) 6, 79, 197, 392, 931
MflI RGATCY 1 cut(s) 559
MhlI GDGCHC 2 cut(s) 249, 522
MlsI TGGCCA 1 cut(s) 788
MluCI AATT 6 cut(s) 109, 195, 537, 588, 632, 982
MluNI TGGCCA 1 cut(s) 788
MmeI TCCRAC 2 cut(s) 331, 959
Mox20I TGGCCA 1 cut(s) 788
Mph1103I ATGCAT 1 cut(s) 886
MroXI GAANNNNTTC 2 cut(s) 171, 396
MscI TGGCCA 1 cut(s) 788
MseI TTAA 5 cut(s) 530, 626, 803, 1031, 1072
Msp20I TGGCCA 1 cut(s) 788
MspA1I CMGCKG 3 cut(s) 79, 103, 919
MspCI CTTAAG 1 cut(s) 625
MspR9I CCNGG 2 cut(s) 767, 834
MvaI CCWGG 2 cut(s) 767, 834
MvnI CGCG 1 cut(s) 919
MwoI GCNNNNNNNGC 3 cut(s) 137, 881, 1060
NcoI CCATGG 1 cut(s) 956
NdeII GATC 5 cut(s) 60, 147, 253, 559, 700
NlaIII CATG 4 cut(s) 872, 879, 960, 994
NlaIV GGNNCC 4 cut(s) 270, 317, 519, 726
NsiI ATGCAT 1 cut(s) 886
PaeR7I CTCGAG 1 cut(s) 577
PdmI GAANNNNTTC 2 cut(s) 171, 396
PfeI GAWTC 2 cut(s) 172, 474
PflMI CCANNNNNTGG 1 cut(s) 772
PfoI TCCNGGA 1 cut(s) 832
PkrI GCNGC 5 cut(s) 102, 105, 738, 874, 921
PshBI ATTAAT 1 cut(s) 1031
PsiI TTATAA 2 cut(s) 587, 597
Psp6I CCWGG 2 cut(s) 765, 832
PspGI CCWGG 2 cut(s) 765, 832
PspN4I GGNNCC 4 cut(s) 270, 317, 519, 726
PspPI GGNCC 3 cut(s) 550, 839, 966
PsuI RGATCY 1 cut(s) 559
RsaI GTAC 4 cut(s) 396, 546, 848, 962
RsaNI GTAC 4 cut(s) 395, 545, 847, 961
SacII CCGCGG 1 cut(s) 920
SaqAI TTAA 5 cut(s) 530, 626, 803, 1031, 1072
SatI GCNGC 5 cut(s) 101, 104, 737, 873, 920
Sau3AI GATC 5 cut(s) 60, 147, 253, 559, 700
Sau96I GGNCC 3 cut(s) 550, 839, 966
ScaI AGTACT 1 cut(s) 396
ScrFI CCNGG 2 cut(s) 767, 834
SduI GDGCHC 2 cut(s) 249, 522
SfaNI GCATC 5 cut(s) 181, 297, 338, 871, 931
Sfr274I CTCGAG 1 cut(s) 577
Sfr303I CCGCGG 1 cut(s) 920
SgrBI CCGCGG 1 cut(s) 920
SinI GGWCC 2 cut(s) 550, 839
SlaI CTCGAG 1 cut(s) 577
SmlI CTYRAG 5 cut(s) 6, 500, 577, 625, 1039
SmoI CTYRAG 5 cut(s) 6, 500, 577, 625, 1039
Sse9I AATT 6 cut(s) 109, 195, 537, 588, 632, 982
SsiI CCGC 8 cut(s) 79, 103, 106, 872, 917, 919, 969, 1007
SspMI CTAG 1 cut(s) 695
StyD4I CCNGG 2 cut(s) 765, 832
StyI CCWWGG 1 cut(s) 956
TaaI ACNGT 1 cut(s) 528
TaqI TCGA 6 cut(s) 25, 42, 63, 150, 578, 615
TasI AATT 6 cut(s) 109, 195, 537, 588, 632, 982
TatI WGTACW 2 cut(s) 394, 544
TauI GCSGC 3 cut(s) 106, 875, 922
TfiI GAWTC 2 cut(s) 172, 474
Tru1I TTAA 5 cut(s) 530, 626, 803, 1031, 1072
Tru9I TTAA 5 cut(s) 530, 626, 803, 1031, 1072
TscAI CASTG 2 cut(s) 54, 256
TseI GCWGC 2 cut(s) 100, 736
TspDTI ATGAA 1 cut(s) 738
TspGWI ACGGA 1 cut(s) 84
TspRI CASTG 2 cut(s) 54, 256
Van91I CCANNNNNTGG 1 cut(s) 772
Vha464I CTTAAG 1 cut(s) 625
VpaK11BI GGWCC 2 cut(s) 550, 839
VspI ATTAAT 1 cut(s) 1031
XapI RAATTY 4 cut(s) 109, 537, 632, 982
XhoI CTCGAG 1 cut(s) 577
XmnI GAANNNNTTC 2 cut(s) 171, 396
XspI CTAG 1 cut(s) 695
ZrmI AGTACT 1 cut(s) 396
Zsp2I ATGCAT 1 cut(s) 886
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.