Rorug05G0358600

No description available

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
Physical Location & Seq
Reverse (-)
45534472 .. 45537132
2661 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0358600.1

Sequence Viewer

Length: 2133 bp
ATGGAGTTTAGTTCTGATGAGAGCGCGTATAAAGCTTATGCTAAATATGGAGGAAAATCTGGTTTCAATGTGAGAAAACAACGAAAGAAGAGAAACAACAAGGGTTTGGTTGTAAAGTTGCTTTATTGTTGCTCAAAACAAGGTTACCGAAAGACCAGAACAAAGAGGGAAACATCTTATTCATTACCAGTTACAAGGGTCGGTTGTAAAGCCCATATGAGTTGCTATCGTCAAAGCAACGGAAAATTCCAGATTGTGTCGTTTGAGACAAATCACAATCATGAGTTGATTAAAACACCTATGAAGCATATGTTAAAGATTAATCGAAGTTTCTCTAAAGCTCAAAAAGAACATGCTGATGATGCTGAGATGTCAGGAATTTCAGCAAAAGCAACAGTTGAATTGATGAGTAGAGAAGTTGGGGGACGAGAGAATCTTGGTTTTATGGAAAAGGACTATCGGAATTACATACATCGAAAGCGAAGGGTGAAGATGGAAAAAGGAGATGCTGGAGCTATATTGCAATACTTCCAAAAAATGAAAGAGGATAATTCATCTTCTTTTTATTCAATGCAACTTGATGAGGATGATATGATCACGAATATTTTTTGGGCAGATGAGCGTTCAGTAAGTGATTATGGTCTTTTTGGGGACGTCGTTTGTTTTGACACAACTTATCAGACTAATGAATATGGTAGACCATTTGCTCCATTTGTTGGGGTCAATCATCATAAGCAAACAGTGGTATTTGGTGCAGCTTTATTATATGATGAAACCATTGAGTCCTTTAAGTGGCTTTTTGAGACTTTTCTTAGAGCGATGTCTGGAAAGCAACCAAAAACCATACTTACAGACCATTCTGCAGCAATGGCTAGTGCAATAGCAGAAGCTACAAAGAGGTTAAGTCGTGTGTTTCACGGATCAGAACAGTTTGCTCATGATTTTGGAAAGTGTGTATATGACTATGAGGATGAAGATGATTGGTTATTGGCATGGAGTAATATGCTCGAGAAACACAATTTGAAGGAGGATAAATGGTTAAAGAATTTGTTTGATTTGAGAAAAAAATGGGCATTGGTATATGGGCGGCATACTTTTACTGCAGATATGATGAGTACACAACGTAGTGAAAGTATGAATAATATTTTGAAAAAATACTTGAAGCCTAGTTATGACCTGTTGTGCTTCTTTGAACACTATGAGAGAGTTTTGGCTGATCGACGATATGAAGAATTAATTGCTGACTTCAAGATGATGCAAACCTCTCCTGTGTTATCTGCTAACGTAGAGATGTTGCAACATGCAGAGGAGGTGTATACCCCAGAAGCTTTTAGACTCTTCCAGCAACAATACACAAGTATTGGTGATTATGTTGCTAATAAAGTTAGCAAGTCTGAGATGAAATATGAATACAAAGTATCTTATCGTGGTGTTGCTCGAGAGCATTTGGTAAAATTTGATGCTTCAGAGCAAACAATAACTTGTAGTTGCATGAAGTTTAATTTTGTTGAGATTTTATGCCGTCATGCAATGAAAGTGTTGGATAGGAAGAACGTGAGAAGAATCCCTCCTACTTGCATATTAAATCGATGGAGTAAAGAAGCTAAGGCAAGAAGCATCACTTGTTATCATGGACCAAAGACTAATGAAAATCTCAAGCAGTCGATTGGAAAGCGGTACAGCCATTTGTGTCGTAATTATAGTGAGATTGCATCCTTTGCTGCAGAACATGAGGAATTAACAACGTATGCAGATGAATATGCCATCGAGTTGCTTAAAAATTTGGAAGAAAAGAAGAAGAAACTTTTGAAAGAAGATGCATGGGTGATTCAAACTTCAGATGTTGGAGCTTTGGAAGCAAGTAAAGCCGCAAAGAAACAACTATCCTTCCAGGATTCTATTCCTATTAGTGACAATTGCGAGCAACAAGAAGTCAATGAATATGAAGTTCCAATGCTTGATTTTGCAACTCAAGAATCCAATCTTAGCGCTGGTACCCAAGTATCAATTTATGGTACAAGTGTAACTTTGCAAAATGGCTTTTCTTTCACTCAAATGCTCCAGGAAATTTCAATGAATCATGCTAATTCTTCACAAAGTAATGAAGAAGGCAAAAAGCAGCTGGGAAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

710

Amino Acids

82.15

Weight (kDa)

8.55

Isoelectric Point (pI)

44.19

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FAR1 PF03101 13 - 97 1e-17 FAR1 DNA-binding domain
ZSWIM1-3_RNaseH-like PF21056 179 - 296 2.6e-09 Zinc finger SWIM domain-containing protein 1/3, RNaseH-like domain
MULE PF10551 219 - 296 6.2e-22 MULE transposase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 657
Acc65I GGTACC 1 cut(s) 1994
AccB1I GGYRCC 1 cut(s) 1994
AccB7I CCANNNNNTGG 1 cut(s) 716
AccI GTMKAC 2 cut(s) 697, 1316
AccII CGCG 1 cut(s) 26
AciI CCGC 3 cut(s) 1087, 1675, 1869
AclWI GGATC 1 cut(s) 928
AcsI RAATTY 6 cut(s) 245, 378, 1045, 1454, 1780, 2067
AcuI CTGAAG 2 cut(s) 1449, 1821
AcyI GRCGYC 1 cut(s) 654
AfaI GTAC 4 cut(s) 1117, 1679, 1996, 2017
AfeI AGCGCT 1 cut(s) 1990
AfiI CCNNNNNNNGG 2 cut(s) 716, 792
AjnI CCWGG 2 cut(s) 1890, 2061
AluBI AGCT 9 cut(s) 35, 341, 515, 758, 890, 1328, 1604, 1850, 2122
AluI AGCT 9 cut(s) 35, 341, 515, 758, 890, 1328, 1604, 1850, 2122
Alw26I GTCTC 2 cut(s) 260, 797
AlwI GGATC 1 cut(s) 928
Ama87I CYCGRG 2 cut(s) 1007, 1437
Aor51HI AGCGCT 1 cut(s) 1990
ApeKI GCWGC 4 cut(s) 755, 863, 1721, 2119
ApoI RAATTY 6 cut(s) 245, 378, 1045, 1454, 1780, 2067
AseI ATTAAT 2 cut(s) 321, 1235
Asp718I GGTACC 1 cut(s) 1994
AspLEI GCGC 2 cut(s) 26, 1991
AspS9I GGNCC 1 cut(s) 1634
AsuHPI GGTGA 3 cut(s) 499, 1376, 1837
AvaI CYCGRG 2 cut(s) 1007, 1437
AvaII GGWCC 1 cut(s) 1634
BaeI ACNNNNGTAYC 6 cut(s) 1986, 1986, 2007, 2019, 2019, 2040
BanI GGYRCC 1 cut(s) 1994
BbvI GCAGC 3 cut(s) 767, 875, 1708
BccI CCATC 3 cut(s) 487, 1584, 1772
BceAI ACGGC 1 cut(s) 1506
BciT130I CCWGG 2 cut(s) 1892, 2063
BclI TGATCA 1 cut(s) 594
BcoDI GTCTC 2 cut(s) 260, 797
BfaI CTAG 2 cut(s) 873, 1167
BfmI CTRYAG 3 cut(s) 861, 1101, 1722
BfoI RGCGCY 1 cut(s) 1992
BisI GCNGC 6 cut(s) 756, 864, 1088, 1722, 1869, 2120
BlsI GCNGC 6 cut(s) 757, 865, 1089, 1723, 1870, 2121
Bme1390I CCNGG 2 cut(s) 1892, 2063
Bme18I GGWCC 1 cut(s) 1634
BmeT110I CYCGRG 2 cut(s) 1007, 1437
BmgT120I GGNCC 1 cut(s) 1634
BmiI GGNNCC 1 cut(s) 1996
BmrFI CCNGG 2 cut(s) 1892, 2063
BmsI GCATC 7 cut(s) 352, 496, 1245, 1450, 1626, 1721, 1807
BpmI CTGGAG 2 cut(s) 531, 2045
Bpu10I CCTNAGC 1 cut(s) 1605
BpuEI CTTGAG 2 cut(s) 1640, 1956
Bsa29I ATCGAT 1 cut(s) 1588
BsaHI GRCGYC 1 cut(s) 654
Bsc4I CCNNNNNNNGG 2 cut(s) 716, 792
Bse1I ACTGG 1 cut(s) 188
Bse3DI GCAATG 2 cut(s) 873, 1536
BseBI CCWGG 2 cut(s) 1892, 2063
BseCI ATCGAT 1 cut(s) 1588
BseGI GGATG 3 cut(s) 592, 976, 1712
BseLI CCNNNNNNNGG 2 cut(s) 716, 792
BseMI GCAATG 2 cut(s) 873, 1536
BseMII CTCAG 2 cut(s) 357, 1386
BseNI ACTGG 1 cut(s) 188
BseRI GAGGAG 1 cut(s) 1322
BseXI GCAGC 3 cut(s) 767, 875, 1708
BseYI CCCAGC 1 cut(s) 2122
BsgI GTGCAG 1 cut(s) 774
Bsh1236I CGCG 1 cut(s) 26
BshNI GGYRCC 1 cut(s) 1994
BshVI ATCGAT 1 cut(s) 1588
BsiHKCI CYCGRG 2 cut(s) 1007, 1437
BslFI GGGAC 2 cut(s) 438, 665
BslI CCNNNNNNNGG 2 cut(s) 716, 792
BsmAI GTCTC 2 cut(s) 260, 797
BsmFI GGGAC 2 cut(s) 438, 665
BsoBI CYCGRG 2 cut(s) 1007, 1437
Bsp143I GATC 3 cut(s) 594, 920, 1216
BspACI CCGC 3 cut(s) 1087, 1675, 1869
BspCNI CTCAG 2 cut(s) 358, 1387
BspDI ATCGAT 1 cut(s) 1588
BspFNI CGCG 1 cut(s) 26
BspHI TCATGA 2 cut(s) 280, 937
BspLI GGNNCC 1 cut(s) 1996
BspMAI CTGCAG 3 cut(s) 865, 1105, 1726
BspPI GGATC 1 cut(s) 928
BspT107I GGYRCC 1 cut(s) 1994
BsrDI GCAATG 2 cut(s) 873, 1536
BsrI ACTGG 1 cut(s) 188
BssMI GATC 3 cut(s) 594, 920, 1216
BssNAI GTATAC 1 cut(s) 1317
BssNI GRCGYC 1 cut(s) 654
Bst1107I GTATAC 1 cut(s) 1317
Bst2UI CCWGG 2 cut(s) 1892, 2063
Bst4CI ACNGT 3 cut(s) 397, 742, 930
Bst6I CTCTTC 2 cut(s) 83, 1343
BstACI GRCGYC 1 cut(s) 654
BstAPI GCANNNNNTGC 1 cut(s) 1718
BstC8I GCNNGC 1 cut(s) 1922
BstDEI CTNAG 5 cut(s) 366, 812, 1395, 1605, 1985
BstEII GGTNACC 1 cut(s) 143
BstF5I GGATG 3 cut(s) 592, 976, 1712
BstFNI CGCG 1 cut(s) 26
BstH2I RGCGCY 1 cut(s) 1992
BstHHI GCGC 2 cut(s) 26, 1991
BstKTI GATC 3 cut(s) 597, 923, 1219
BstMAI GTCTC 2 cut(s) 260, 797
BstMBI GATC 3 cut(s) 594, 920, 1216
BstMWI GCNNNNNNNGC 6 cut(s) 32, 362, 869, 1718, 1856, 1865
BstNI CCWGG 2 cut(s) 1892, 2063
BstNSI RCATGY 2 cut(s) 356, 1304
BstPI GGTNACC 1 cut(s) 143
BstSCI CCNGG 2 cut(s) 1890, 2061
BstSFI CTRYAG 3 cut(s) 861, 1101, 1722
BstUI CGCG 1 cut(s) 26
BstV1I GCAGC 3 cut(s) 767, 875, 1708
BstZ17I GTATAC 1 cut(s) 1317
Bsu15I ATCGAT 1 cut(s) 1588
BsuTUI ATCGAT 1 cut(s) 1588
BtgZI GCGATG 1 cut(s) 833
BtsCI GGATG 3 cut(s) 592, 976, 1712
BtsIMutI CAGTG 1 cut(s) 747
Cac8I GCNNGC 1 cut(s) 1922
CciI TCATGA 2 cut(s) 280, 937
CfoI GCGC 2 cut(s) 26, 1991
Cfr13I GGNCC 1 cut(s) 1634
ClaI ATCGAT 1 cut(s) 1588
Csp6I GTAC 4 cut(s) 1116, 1678, 1995, 2016
CviQI GTAC 4 cut(s) 1116, 1678, 1995, 2016
DdeI CTNAG 5 cut(s) 366, 812, 1395, 1605, 1985
DpnI GATC 3 cut(s) 596, 922, 1218
DpnII GATC 3 cut(s) 594, 920, 1216
Eam1104I CTCTTC 2 cut(s) 83, 1343
EarI CTCTTC 2 cut(s) 83, 1343
Eco47I GGWCC 1 cut(s) 1634
Eco47III AGCGCT 1 cut(s) 1990
Eco57I CTGAAG 2 cut(s) 1449, 1821
Eco88I CYCGRG 2 cut(s) 1007, 1437
Eco91I GGTNACC 1 cut(s) 143
EcoO65I GGTNACC 1 cut(s) 143
EcoRII CCWGG 2 cut(s) 1890, 2061
EcoT22I ATGCAT 1 cut(s) 1822
FalI AAGNNNNNCTT 4 cut(s) 1606, 1638, 2011, 2043
FaqI GGGAC 2 cut(s) 438, 665
FauNDI CATATG 2 cut(s) 216, 309
FbaI TGATCA 1 cut(s) 594
FblI GTMKAC 2 cut(s) 697, 1316
Fnu4HI GCNGC 6 cut(s) 756, 864, 1088, 1722, 1869, 2120
FokI GGATG 3 cut(s) 599, 983, 1699
Fsp4HI GCNGC 6 cut(s) 756, 864, 1088, 1722, 1869, 2120
FspBI CTAG 2 cut(s) 873, 1167
GlaI GCGC 2 cut(s) 25, 1990
GluI GCNGC 6 cut(s) 756, 864, 1088, 1722, 1869, 2120
GsaI CCCAGC 1 cut(s) 2126
GsuI CTGGAG 2 cut(s) 531, 2045
HaeII RGCGCY 1 cut(s) 1992
HhaI GCGC 2 cut(s) 26, 1991
Hin1I GRCGYC 1 cut(s) 654
Hin6I GCGC 2 cut(s) 24, 1989
HinP1I GCGC 2 cut(s) 24, 1989
HindIII AAGCTT 2 cut(s) 33, 1326
HinfI GANTC 8 cut(s) 433, 782, 1335, 1563, 1828, 1895, 1976, 2077
HphI GGTGA 3 cut(s) 499, 1376, 1837
Hpy166II GTNNAC 3 cut(s) 698, 1118, 1317
Hpy188I TCNGA 7 cut(s) 16, 462, 681, 925, 1396, 1468, 1840
Hpy8I GTNNAC 3 cut(s) 698, 1118, 1317
Hpy99I CGWCG 2 cut(s) 659, 1224
HpyAV CCTTC 4 cut(s) 477, 1018, 1897, 2102
HpyCH4III ACNGT 3 cut(s) 397, 742, 930
HpyCH4IV ACGT 5 cut(s) 654, 1123, 1284, 1554, 1745
HpyF10VI GCNNNNNNNGC 6 cut(s) 32, 362, 869, 1718, 1856, 1865
HpyF3I CTNAG 5 cut(s) 366, 812, 1395, 1605, 1985
HpySE526I ACGT 5 cut(s) 654, 1123, 1284, 1554, 1745
Hsp92I GRCGYC 1 cut(s) 654
HspAI GCGC 2 cut(s) 24, 1989
KpnI GGTACC 1 cut(s) 1998
Ksp22I TGATCA 1 cut(s) 594
Kzo9I GATC 3 cut(s) 594, 920, 1216
LmnI GCTCC 4 cut(s) 512, 712, 1847, 2064
Lsp1109I GCAGC 3 cut(s) 767, 875, 1708
LweI GCATC 7 cut(s) 352, 496, 1245, 1450, 1626, 1721, 1807
MaeI CTAG 2 cut(s) 873, 1167
MaeII ACGT 5 cut(s) 654, 1123, 1284, 1554, 1745
MaeIII GTNAC 4 cut(s) 143, 190, 1910, 2023
MalI GATC 3 cut(s) 596, 922, 1218
MboI GATC 3 cut(s) 594, 920, 1216
MfeI CAATTG 1 cut(s) 1915
MlyI GAGTC 2 cut(s) 791, 1329
MmeI TCCRAC 2 cut(s) 1521, 1825
Mph1103I ATGCAT 1 cut(s) 1822
MslI CAYNNNNRTG 3 cut(s) 279, 357, 2054
MspA1I CMGCKG 1 cut(s) 2122
MspR9I CCNGG 2 cut(s) 1892, 2063
MunI CAATTG 1 cut(s) 1915
MvaI CCWGG 2 cut(s) 1892, 2063
MvnI CGCG 1 cut(s) 26
MwoI GCNNNNNNNGC 6 cut(s) 32, 362, 869, 1718, 1856, 1865
NdeI CATATG 2 cut(s) 216, 309
NdeII GATC 3 cut(s) 594, 920, 1216
NlaIV GGNNCC 1 cut(s) 1996
NmuCI GTSAC 1 cut(s) 1910
NsiI ATGCAT 1 cut(s) 1822
NspI RCATGY 2 cut(s) 356, 1304
PaeR7I CTCGAG 2 cut(s) 1007, 1437
PagI TCATGA 2 cut(s) 280, 937
PfeI GAWTC 6 cut(s) 433, 1563, 1828, 1895, 1976, 2077
PflMI CCANNNNNTGG 1 cut(s) 716
PfoI TCCNGGA 2 cut(s) 1890, 2061
PkrI GCNGC 6 cut(s) 757, 865, 1089, 1723, 1870, 2121
PleI GAGTC 2 cut(s) 790, 1329
PpsI GAGTC 2 cut(s) 790, 1329
PshBI ATTAAT 2 cut(s) 321, 1235
Psp6I CCWGG 2 cut(s) 1890, 2061
PspEI GGTNACC 1 cut(s) 143
PspFI CCCAGC 1 cut(s) 2122
PspGI CCWGG 2 cut(s) 1890, 2061
PspN4I GGNNCC 1 cut(s) 1996
PspPI GGNCC 1 cut(s) 1634
PstI CTGCAG 3 cut(s) 865, 1105, 1726
PvuII CAGCTG 1 cut(s) 2122
RsaI GTAC 4 cut(s) 1117, 1679, 1996, 2017
RsaNI GTAC 4 cut(s) 1116, 1678, 1995, 2016
RseI CAYNNNNRTG 3 cut(s) 279, 357, 2054
SatI GCNGC 6 cut(s) 756, 864, 1088, 1722, 1869, 2120
Sau3AI GATC 3 cut(s) 594, 920, 1216
Sau96I GGNCC 1 cut(s) 1634
SchI GAGTC 2 cut(s) 791, 1329
ScrFI CCNGG 2 cut(s) 1892, 2063
SfaNI GCATC 7 cut(s) 352, 496, 1245, 1450, 1626, 1721, 1807
SfcI CTRYAG 3 cut(s) 861, 1101, 1722
Sfr274I CTCGAG 2 cut(s) 1007, 1437
SinI GGWCC 1 cut(s) 1634
SlaI CTCGAG 2 cut(s) 1007, 1437
SmiMI CAYNNNNRTG 3 cut(s) 279, 357, 2054
SmlI CTYRAG 4 cut(s) 1007, 1437, 1655, 1971
SmoI CTYRAG 4 cut(s) 1007, 1437, 1655, 1971
SsiI CCGC 3 cut(s) 1087, 1675, 1869
SspI AATATT 2 cut(s) 604, 1144
SspMI CTAG 2 cut(s) 873, 1167
StyD4I CCNGG 2 cut(s) 1890, 2061
TaaI ACNGT 3 cut(s) 397, 742, 930
TaiI ACGT 5 cut(s) 657, 1126, 1287, 1557, 1748
TaqI TCGA 8 cut(s) 325, 475, 1008, 1219, 1438, 1588, 1664, 1767
TatI WGTACW 1 cut(s) 1115
TauI GCSGC 2 cut(s) 1090, 1871
TfiI GAWTC 6 cut(s) 433, 1563, 1828, 1895, 1976, 2077
TscAI CASTG 1 cut(s) 747
TseFI GTSAC 1 cut(s) 1910
TseI GCWGC 4 cut(s) 755, 863, 1721, 2119
Tsp45I GTSAC 1 cut(s) 1910
TspGWI ACGGA 2 cut(s) 255, 933
TspRI CASTG 1 cut(s) 747
Van91I CCANNNNNTGG 1 cut(s) 716
VpaK11BI GGWCC 1 cut(s) 1634
VspI ATTAAT 2 cut(s) 321, 1235
XapI RAATTY 6 cut(s) 245, 378, 1045, 1454, 1780, 2067
XceI RCATGY 2 cut(s) 356, 1304
XhoI CTCGAG 2 cut(s) 1007, 1437
XmiI GTMKAC 2 cut(s) 697, 1316
XspI CTAG 2 cut(s) 873, 1167
ZraI GACGTC 1 cut(s) 655
Zsp2I ATGCAT 1 cut(s) 1822
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.