Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr3

Orthogroup ID

OG0003929

Physical Location & Seq

Genomic Coordinates Forward (+)

32928092 .. 32934035

Gene Structure 5944 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw3G025090.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 672 bp

ATGATATACGAGTACGAAGGATTTAGCAAATATTTGAGTTCTGCACTTATCAGCCTTGAAAGATTAATATTCTTAATTTCAGAATTATTTTGTGATATGGGAGATGCTGCGGCGGCTTTGCGATTGGCGGAAGTGGCTGCAAACTCGGGACTCGGCCTATATCTATCCGATCTCTTGATCGAGTTGAGTTTCCAGTACAGTGACCGGTTCACTTCAAGCGTCACTCAGCTCATGGCGCGGTGCCGATTTTCGGGAATTACTTCGGAGATCCTCAGGAGGTCCGATTTCATTCTTGAGCTTTACGAGAGTTGGATTGACATTCAGTCAAATACAAGGCGGTTTGAATCCCTCTTTCTTTATCTTCTTGAGGATGTTGCTTTGGAACCCACCCGGTTAAATAAAATTCCTGTACAGGTCCAGCGAGATCTGTATCTTTTACTTTCAAGGTTTATATTCTTTTATAACTCAGTTGACAAACTTGAGAGCTTCTTAAGGCACTTTCCCGTATTCCCGAATGCTTTTCTGGTTGGTGGTCCTGCAGACTTCTTTGTTATTGAACTTGCAGATCAGCTTCAAAAATTGAAGGTGGAACCGGTATTGCTCCATTACTTTTCACACATTAAAGTTCTCCAGGGCATGGAGCTGAGAATGGCCACAAGTACAAGTGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

223

Amino Acids

25.74

Weight (kDa)

4.99

Isoelectric Point (pI)

47.7

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003929)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G59960 AT5G59960 AT5G59960
fragaria_vesca	FvH4_3g35470 FvH4_3g35470
malus_domestica	MD03G1097100.v1.1 MD11G1143700.v1.1
prunus_persica	Prupe.4G098100_v2.0.a1 Prupe.6G081500_v2.0.a1 Prupe.6G081500_v2.0.a1 Prupe.6G081500_v2.0.a1
pyrus_communis	pycom03g08010 pycom11g09330
rosa_chinensis	RchiOBHm_Chr1g0369801 RchiOBHm_Chr5g0063631
rosa_laevigata	RLG00000029314 RLG00000035658
rosa_multiflora	Rmu_sc0000368.1_g000040 Rmu_ssc0000309.1_g000060
rosa_roxburghii	Rroxscaffold_1G00017170 Rroxscaffold_2G00129250
rosa_rugosa	Rorug05G0358400 Rorug05G0358500 Rorug05G0358500 Rorug05G0358600
rosa_samantha	Rh2CG479400 Rh3DG316400 Rh5AG417200 Rh5BG432800 Rh5CG456000 Rh5DG446200 Rh6CG100700
rosa_wichuraiana	Rw3G025090 Rw5G039210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	462
AccB1I	GGYRCC	1 cut(s)	240
AccB7I	CCANNNNNTGG	1 cut(s)	637
AccII	CGCG	1 cut(s)	238
AciI	CCGC	5 cut(s)	110, 113, 128, 238, 337
AclWI	GGATC	1 cut(s)	262
AcoI	YGGCCR	1 cut(s)	651
AcsI	RAATTY	1 cut(s)	402
AfaI	GTAC	4 cut(s)	14, 197, 411, 661
AfiI	CCNNNNNNNGG	2 cut(s)	250, 637
AflII	CTTAAG	1 cut(s)	490
AgeI	ACCGGT	2 cut(s)	204, 592
AgsI	TTSAA	7 cut(s)	59, 216, 344, 444, 557, 575, 583
AhdI	GACNNNNNGTC	1 cut(s)	322
AjnI	CCWGG	1 cut(s)	630
AluBI	AGCT	5 cut(s)	229, 298, 486, 571, 643
AluI	AGCT	5 cut(s)	229, 298, 486, 571, 643
AlwI	GGATC	1 cut(s)	262
Ama87I	CYCGRG	1 cut(s)	145
AoxI	GGCC	2 cut(s)	154, 651
ApeKI	GCWGC	2 cut(s)	107, 137
ApoI	RAATTY	1 cut(s)	402
AseI	ATTAAT	1 cut(s)	65
AsiGI	ACCGGT	2 cut(s)	204, 592
Asp700I	GAANNNNTTC	1 cut(s)	259
AspLEI	GCGC	1 cut(s)	238
AspS9I	GGNCC	3 cut(s)	279, 415, 533
AsuC2I	CCSGG	1 cut(s)	391
AvaI	CYCGRG	1 cut(s)	145
AvaII	GGWCC	3 cut(s)	279, 415, 533
AxyI	CCTNAGG	1 cut(s)	272
BalI	TGGCCA	1 cut(s)	653
BanI	GGYRCC	1 cut(s)	240
BbvI	GCAGC	2 cut(s)	94, 124
BciT130I	CCWGG	1 cut(s)	632
BcnI	CCSGG	1 cut(s)	391
BfmI	CTRYAG	1 cut(s)	537
BfrI	CTTAAG	1 cut(s)	490
BglII	AGATCT	1 cut(s)	424
BisI	GCNGC	4 cut(s)	108, 111, 114, 138
BlsI	GCNGC	4 cut(s)	109, 112, 115, 139
Bme1390I	CCNGG	2 cut(s)	391, 632
Bme18I	GGWCC	3 cut(s)	279, 415, 533
BmeRI	GACNNNNNGTC	1 cut(s)	322
BmeT110I	CYCGRG	1 cut(s)	145
BmgT120I	GGNCC	3 cut(s)	279, 415, 533
BmiI	GGNNCC	3 cut(s)	242, 384, 591
BmrFI	CCNGG	2 cut(s)	391, 632
BmsI	GCATC	1 cut(s)	94
BpmI	CTGGAG	1 cut(s)	614
BpuEI	CTTGAG	3 cut(s)	314, 386, 500
BpuMI	CCSGG	1 cut(s)	391
BsaBI	GATNNNNATC	1 cut(s)	429
BsaJI	CCNNGG	1 cut(s)	631
BsaWI	WCCGGW	2 cut(s)	204, 592
Bsc4I	CCNNNNNNNGG	2 cut(s)	250, 637
Bse118I	RCCGGY	2 cut(s)	204, 592
Bse1I	ACTGG	1 cut(s)	193
Bse21I	CCTNAGG	1 cut(s)	272
Bse8I	GATNNNNATC	1 cut(s)	429
BseBI	CCWGG	1 cut(s)	632
BseDI	CCNNGG	1 cut(s)	631
BseGI	GGATG	1 cut(s)	376
BseJI	GATNNNNATC	1 cut(s)	429
BseLI	CCNNNNNNNGG	2 cut(s)	250, 637
BseMII	CTCAG	4 cut(s)	239, 286, 480, 635
BseNI	ACTGG	1 cut(s)	193
BseXI	GCAGC	2 cut(s)	94, 124
BsgI	GTGCAG	1 cut(s)	27
Bsh1236I	CGCG	1 cut(s)	238
BshFI	GGCC	2 cut(s)	156, 653
BshNI	GGYRCC	1 cut(s)	240
BshTI	ACCGGT	2 cut(s)	204, 592
BsiHKCI	CYCGRG	1 cut(s)	145
BsiSI	CCGG	3 cut(s)	205, 391, 593
BslFI	GGGAC	1 cut(s)	162
BslI	CCNNNNNNNGG	2 cut(s)	250, 637
BsmFI	GGGAC	1 cut(s)	162
BsmI	GAATGC	1 cut(s)	520
BsnI	GGCC	2 cut(s)	156, 653
BsoBI	CYCGRG	1 cut(s)	145
Bsp1407I	TGTACA	1 cut(s)	409
Bsp143I	GATC	5 cut(s)	169, 177, 267, 424, 565
BspACI	CCGC	5 cut(s)	110, 113, 128, 238, 337
BspANI	GGCC	2 cut(s)	156, 653
BspCNI	CTCAG	4 cut(s)	238, 285, 479, 636
BspFNI	CGCG	1 cut(s)	238
BspLI	GGNNCC	3 cut(s)	242, 384, 591
BspMAI	CTGCAG	1 cut(s)	541
BspPI	GGATC	1 cut(s)	262
BspT107I	GGYRCC	1 cut(s)	240
BspTI	CTTAAG	1 cut(s)	490
BsrFI	RCCGGY	2 cut(s)	204, 592
BsrGI	TGTACA	1 cut(s)	409
BsrI	ACTGG	1 cut(s)	193
BssAI	RCCGGY	2 cut(s)	204, 592
BssECI	CCNNGG	1 cut(s)	631
BssMI	GATC	5 cut(s)	169, 177, 267, 424, 565
Bst2UI	CCWGG	1 cut(s)	632
Bst4CI	ACNGT	1 cut(s)	200
BstAFI	CTTAAG	1 cut(s)	490
BstAUI	TGTACA	1 cut(s)	409
BstDEI	CTNAG	4 cut(s)	225, 272, 466, 644
BstF5I	GGATG	1 cut(s)	376
BstFNI	CGCG	1 cut(s)	238
BstHHI	GCGC	1 cut(s)	238
BstKTI	GATC	5 cut(s)	172, 180, 270, 427, 568
BstMBI	GATC	5 cut(s)	169, 177, 267, 424, 565
BstMWI	GCNNNNNNNGC	3 cut(s)	113, 134, 235
BstNI	CCWGG	1 cut(s)	632
BstSCI	CCNGG	2 cut(s)	389, 630
BstSFI	CTRYAG	1 cut(s)	537
BstUI	CGCG	1 cut(s)	238
BstV1I	GCAGC	2 cut(s)	94, 124
BstX2I	RGATCY	2 cut(s)	267, 424
BstYI	RGATCY	2 cut(s)	267, 424
Bsu36I	CCTNAGG	1 cut(s)	272
BsuRI	GGCC	2 cut(s)	156, 653
BtsCI	GGATG	1 cut(s)	376
BtsIMutI	CAGTG	1 cut(s)	205
CfoI	GCGC	1 cut(s)	238
Cfr10I	RCCGGY	2 cut(s)	204, 592
Cfr13I	GGNCC	3 cut(s)	279, 415, 533
CseI	GACGC	1 cut(s)	208
Csp6I	GTAC	4 cut(s)	13, 196, 410, 660
CspAI	ACCGGT	2 cut(s)	204, 592
CviAII	CATG	2 cut(s)	232, 637
CviQI	GTAC	4 cut(s)	13, 196, 410, 660
DdeI	CTNAG	4 cut(s)	225, 272, 466, 644
DpnI	GATC	5 cut(s)	171, 179, 269, 426, 567
DpnII	GATC	5 cut(s)	169, 177, 267, 424, 565
DriI	GACNNNNNGTC	1 cut(s)	322
EaeI	YGGCCR	1 cut(s)	651
Eam1105I	GACNNNNNGTC	1 cut(s)	322
EciI	GGCGGA	1 cut(s)	143
Eco47I	GGWCC	3 cut(s)	279, 415, 533
Eco81I	CCTNAGG	1 cut(s)	272
Eco88I	CYCGRG	1 cut(s)	145
EcoRII	CCWGG	1 cut(s)	630
FaeI	CATG	2 cut(s)	235, 640
FaiI	YATR	7 cut(s)	7, 98, 160, 233, 452, 462, 638
FaqI	GGGAC	1 cut(s)	162
FatI	CATG	2 cut(s)	231, 636
Fnu4HI	GCNGC	4 cut(s)	108, 111, 114, 138
FokI	GGATG	1 cut(s)	383
Fsp4HI	GCNGC	4 cut(s)	108, 111, 114, 138
GlaI	GCGC	1 cut(s)	237
GluI	GCNGC	4 cut(s)	108, 111, 114, 138
GsuI	CTGGAG	1 cut(s)	614
HaeIII	GGCC	2 cut(s)	156, 653
HapII	CCGG	3 cut(s)	205, 391, 593
HgaI	GACGC	1 cut(s)	208
HhaI	GCGC	1 cut(s)	238
Hin1II	CATG	2 cut(s)	235, 640
Hin6I	GCGC	1 cut(s)	236
HinP1I	GCGC	1 cut(s)	236
HincII	GTYRAC	1 cut(s)	472
HindII	GTYRAC	1 cut(s)	472
HinfI	GANTC	2 cut(s)	150, 344
HpaII	CCGG	3 cut(s)	205, 391, 593
Hpy166II	GTNNAC	2 cut(s)	210, 472
Hpy188I	TCNGA	4 cut(s)	82, 169, 265, 283
Hpy188III	TCNNGA	7 cut(s)	147, 175, 252, 274, 293, 365, 511
Hpy8I	GTNNAC	2 cut(s)	210, 472
HpyAV	CCTTC	2 cut(s)	11, 577
HpyCH4III	ACNGT	1 cut(s)	200
HpyCH4V	TGCA	4 cut(s)	44, 140, 539, 563
HpyF10VI	GCNNNNNNNGC	3 cut(s)	113, 134, 235
HpyF3I	CTNAG	4 cut(s)	225, 272, 466, 644
Hsp92II	CATG	2 cut(s)	235, 640
HspAI	GCGC	1 cut(s)	236
Kzo9I	GATC	5 cut(s)	169, 177, 267, 424, 565
LmnI	GCTCC	2 cut(s)	606, 640
Lsp1109I	GCAGC	2 cut(s)	94, 124
LweI	GCATC	1 cut(s)	94
MaeIII	GTNAC	2 cut(s)	200, 220
MalI	GATC	5 cut(s)	171, 179, 269, 426, 567
MboI	GATC	5 cut(s)	169, 177, 267, 424, 565
MboII	GAAGA	1 cut(s)	353
MflI	RGATCY	2 cut(s)	267, 424
MlsI	TGGCCA	1 cut(s)	653
MluCI	AATT	5 cut(s)	75, 83, 255, 402, 578
MluNI	TGGCCA	1 cut(s)	653
MlyI	GAGTC	1 cut(s)	144
MmeI	TCCRAC	1 cut(s)	290
MnlI	CCTC	4 cut(s)	270, 281, 359, 361
Mox20I	TGGCCA	1 cut(s)	653
MroXI	GAANNNNTTC	1 cut(s)	259
MscI	TGGCCA	1 cut(s)	653
MseI	TTAA	5 cut(s)	65, 74, 395, 491, 621
Msp20I	TGGCCA	1 cut(s)	653
MspCI	CTTAAG	1 cut(s)	490
MspI	CCGG	3 cut(s)	205, 391, 593
MspR9I	CCNGG	2 cut(s)	391, 632
Mva1269I	GAATGC	1 cut(s)	520
MvaI	CCWGG	1 cut(s)	632
MvnI	CGCG	1 cut(s)	238
MwoI	GCNNNNNNNGC	3 cut(s)	113, 134, 235
NciI	CCSGG	1 cut(s)	391
NdeII	GATC	5 cut(s)	169, 177, 267, 424, 565
NlaIII	CATG	2 cut(s)	235, 640
NlaIV	GGNNCC	3 cut(s)	242, 384, 591
NmeAIII	GCCGAG	1 cut(s)	132
NmuCI	GTSAC	2 cut(s)	200, 220
PctI	GAATGC	1 cut(s)	520
PdmI	GAANNNNTTC	1 cut(s)	259
PfeI	GAWTC	1 cut(s)	344
PflMI	CCANNNNNTGG	1 cut(s)	637
PinAI	ACCGGT	2 cut(s)	204, 592
PkrI	GCNGC	4 cut(s)	109, 112, 115, 139
PleI	GAGTC	1 cut(s)	144
PpsI	GAGTC	1 cut(s)	144
PshBI	ATTAAT	1 cut(s)	65
PsiI	TTATAA	1 cut(s)	462
Psp6I	CCWGG	1 cut(s)	630
PspGI	CCWGG	1 cut(s)	630
PspN4I	GGNNCC	3 cut(s)	242, 384, 591
PspPI	GGNCC	3 cut(s)	279, 415, 533
PstI	CTGCAG	1 cut(s)	541
PsuI	RGATCY	2 cut(s)	267, 424
RsaI	GTAC	4 cut(s)	14, 197, 411, 661
RsaNI	GTAC	4 cut(s)	13, 196, 410, 660
SaqAI	TTAA	5 cut(s)	65, 74, 395, 491, 621
SatI	GCNGC	4 cut(s)	108, 111, 114, 138
Sau3AI	GATC	5 cut(s)	169, 177, 267, 424, 565
Sau96I	GGNCC	3 cut(s)	279, 415, 533
SchI	GAGTC	1 cut(s)	144
ScrFI	CCNGG	2 cut(s)	391, 632
SetI	ASST	9 cut(s)	231, 281, 300, 417, 449, 488, 573, 588, 645
SfaNI	GCATC	1 cut(s)	94
SfcI	CTRYAG	1 cut(s)	537
SinI	GGWCC	3 cut(s)	279, 415, 533
SmlI	CTYRAG	4 cut(s)	293, 365, 479, 490
SmoI	CTYRAG	4 cut(s)	293, 365, 479, 490
Sse9I	AATT	5 cut(s)	75, 83, 255, 402, 578
SsiI	CCGC	5 cut(s)	110, 113, 128, 238, 337
SspI	AATATT	2 cut(s)	32, 69
StyD4I	CCNGG	2 cut(s)	389, 630
TaaI	ACNGT	1 cut(s)	200
TaqI	TCGA	1 cut(s)	180
TasI	AATT	5 cut(s)	75, 83, 255, 402, 578
TatI	WGTACW	3 cut(s)	195, 409, 659
TauI	GCSGC	2 cut(s)	113, 116
TfiI	GAWTC	1 cut(s)	344
Tru1I	TTAA	5 cut(s)	65, 74, 395, 491, 621
Tru9I	TTAA	5 cut(s)	65, 74, 395, 491, 621
TscAI	CASTG	1 cut(s)	205
TseFI	GTSAC	2 cut(s)	200, 220
TseI	GCWGC	2 cut(s)	107, 137
Tsp45I	GTSAC	2 cut(s)	200, 220
TspDTI	ATGAA	1 cut(s)	277
TspRI	CASTG	1 cut(s)	205
Van91I	CCANNNNNTGG	1 cut(s)	637
Vha464I	CTTAAG	1 cut(s)	490
VpaK11BI	GGWCC	3 cut(s)	279, 415, 533
VspI	ATTAAT	1 cut(s)	65
XapI	RAATTY	1 cut(s)	402
XmnI	GAANNNNTTC	1 cut(s)	259

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.