Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0003929

Physical Location & Seq

Genomic Coordinates Forward (+)

21341878 .. 21347641

Gene Structure 5764 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00017170.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1074 bp

ATGCCGCAAGCTTCTTTCACGCCTCGAAGCTCTGCCTATCTCGACGCTCTCACCCAAGAAATCGAGAAGAAACTCCAGCGGGCCCTAGCTTCTCCCTCACTGCGCCGCAACTTGTTGCAGGAGTTGTTTACTGACATTGCCTTAGAGATTGATGAGCGGGCCAAAGATATAATTCTCAGCCCGGAAGATGATGCAATTTCTCCTGCAGAGGATTGCATTTATGGTCAGCTATGCTTTCATGATGTACTTGCTGACTATTATGTTTGGGTGCCTGAGAGCGGAAAACGCATCCTTGATCTGATTGTCCAACTCTGGAGCCAGTCATTTGCATCTCACATTTTCGCCTTGTTATTTCACAAATGGCTTTTTGAAGTTCAACTTGACAACTCTGAAGTCCTTCTACGATTCTCATCTGCTCTTGTTCAAGGTGCTACAAATGTTTTCTGGATTGACATTCAGTCAAATACAAGGCGATTTGAATCCCTCTTTCTTTATCTTCTTGAGGATGTTGCTTTGGAACGCACCCGGTTAAATAAAATTCCTGTACAGGTCCAGCGAGATCTGTATCTTTTACTTTCAAGGTTTATATTCTTTTATAACTCAGTTGACAAACTCGAGAGCTTCTTAAGGCAATTTCCCGTTTTCCCGAATGCTTTTCTGGTTGGTGGTCCTGCAGACTTCTTTGTTATTGAACTTGCAGATCAGCTTCAAAAACTGAAGGTGGAACCAGTATTGCTCCATTACTTTTCACACATTAAAGTTCTCCAGGGCATGGAGCTGAGAATGGCCACAAGTACAAGGTTAAAGACTTGTTTGTATAGCTTCACTTCTCCTGGTGGTCCAATGTACCCTACAAGAGTTGTTCGTCATGCTGCCTGGGATGCTTTAGATTTGCTTTTTCCAGTTGGGCGATACCCTCGACATCTTATAAGCCTGTTCTTCCGATTGTTGTATCCATGGTACTGGCCCTCTTCTTGTTGGAATTTTGTGATGGATTGCATAAAGGCAGTATTGTATTCTCTGTTGGGATTAATCTATTCAAGTTTAGAGAAGCTGAAAAAGCCAAAGTTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

357

Amino Acids

41.55

Weight (kDa)

6.67

Isoelectric Point (pI)

56.12

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003929)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G59960 AT5G59960 AT5G59960
fragaria_vesca	FvH4_3g35470 FvH4_3g35470
malus_domestica	MD03G1097100.v1.1 MD11G1143700.v1.1
prunus_persica	Prupe.4G098100_v2.0.a1 Prupe.6G081500_v2.0.a1 Prupe.6G081500_v2.0.a1 Prupe.6G081500_v2.0.a1
pyrus_communis	pycom03g08010 pycom11g09330
rosa_chinensis	RchiOBHm_Chr1g0369801 RchiOBHm_Chr5g0063631
rosa_laevigata	RLG00000029314 RLG00000035658
rosa_multiflora	Rmu_sc0000368.1_g000040 Rmu_ssc0000309.1_g000060
rosa_roxburghii	Rroxscaffold_1G00017170 Rroxscaffold_2G00129250
rosa_rugosa	Rorug05G0358400 Rorug05G0358500 Rorug05G0358500 Rorug05G0358600
rosa_samantha	Rh2CG479400 Rh3DG316400 Rh5AG417200 Rh5BG432800 Rh5CG456000 Rh5DG446200 Rh6CG100700
rosa_wichuraiana	Rw3G025090 Rw5G039210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	597, 929
AccB1I	GGYRCC	1 cut(s)	268
AccB7I	CCANNNNNTGG	1 cut(s)	772
AccBSI	CCGCTC	2 cut(s)	157, 279
AciI	CCGC	5 cut(s)	5, 79, 106, 157, 279
AcoI	YGGCCR	1 cut(s)	786
AcsI	RAATTY	2 cut(s)	537, 982
AcuI	CTGAAG	2 cut(s)	411, 737
AfaI	GTAC	5 cut(s)	246, 546, 796, 848, 962
AfiI	CCNNNNNNNGG	2 cut(s)	278, 772
AflII	CTTAAG	1 cut(s)	625
AgsI	TTSAA	8 cut(s)	371, 377, 425, 479, 579, 692, 710, 1041
AhdI	GACNNNNNGTC	1 cut(s)	457
AjnI	CCWGG	3 cut(s)	765, 832, 875
AluBI	AGCT	9 cut(s)	11, 30, 89, 229, 621, 706, 778, 822, 1054
AluI	AGCT	9 cut(s)	11, 30, 89, 229, 621, 706, 778, 822, 1054
Ama87I	CYCGRG	1 cut(s)	614
AoxI	GGCC	4 cut(s)	81, 159, 786, 965
ApaI	GGGCCC	1 cut(s)	85
ApeKI	GCWGC	1 cut(s)	872
ApoI	RAATTY	2 cut(s)	537, 982
AseI	ATTAAT	1 cut(s)	1031
Asp700I	GAANNNNTTC	1 cut(s)	396
AspLEI	GCGC	1 cut(s)	105
AspS9I	GGNCC	7 cut(s)	81, 82, 159, 550, 668, 839, 966
AsuC2I	CCSGG	2 cut(s)	182, 526
AsuHPI	GGTGA	1 cut(s)	43
AvaI	CYCGRG	1 cut(s)	614
AvaII	GGWCC	3 cut(s)	550, 668, 839
BaeGI	GKGCMC	1 cut(s)	85
BalI	TGGCCA	1 cut(s)	788
BanI	GGYRCC	1 cut(s)	268
BanII	GRGCYC	1 cut(s)	85
BarI	GAAGNNNNNNTAC	2 cut(s)	384, 416
BbvI	GCAGC	1 cut(s)	859
BccI	CCATC	1 cut(s)	985
BciT130I	CCWGG	3 cut(s)	767, 834, 877
BciVI	GTATCC	1 cut(s)	963
BcnI	CCSGG	2 cut(s)	182, 526
BfaI	CTAG	1 cut(s)	86
BfmI	CTRYAG	2 cut(s)	204, 672
BfrI	CTTAAG	1 cut(s)	625
BfuI	GTATCC	1 cut(s)	963
BglII	AGATCT	1 cut(s)	559
BisI	GCNGC	3 cut(s)	5, 106, 873
BlsI	GCNGC	3 cut(s)	6, 107, 874
Bme1390I	CCNGG	5 cut(s)	182, 526, 767, 834, 877
Bme18I	GGWCC	3 cut(s)	550, 668, 839
BmeRI	GACNNNNNGTC	1 cut(s)	457
BmeT110I	CYCGRG	1 cut(s)	614
BmgT120I	GGNCC	7 cut(s)	81, 82, 159, 550, 668, 839, 966
BmiI	GGNNCC	4 cut(s)	83, 270, 317, 726
BmrFI	CCNGG	5 cut(s)	182, 526, 767, 834, 877
BmsI	GCATC	4 cut(s)	181, 297, 338, 871
BpmI	CTGGAG	3 cut(s)	59, 334, 749
BpuEI	CTTGAG	1 cut(s)	521
BpuMI	CCSGG	2 cut(s)	182, 526
BsaBI	GATNNNNATC	3 cut(s)	409, 478, 564
BsaJI	CCNNGG	3 cut(s)	766, 876, 956
Bsc4I	CCNNNNNNNGG	2 cut(s)	278, 772
Bse1I	ACTGG	4 cut(s)	319, 728, 902, 968
Bse3DI	GCAATG	1 cut(s)	135
Bse8I	GATNNNNATC	3 cut(s)	409, 478, 564
BseBI	CCWGG	3 cut(s)	767, 834, 877
BseDI	CCNNGG	3 cut(s)	766, 876, 956
BseGI	GGATG	3 cut(s)	288, 511, 886
BseJI	GATNNNNATC	3 cut(s)	409, 478, 564
BseLI	CCNNNNNNNGG	2 cut(s)	278, 772
BseMI	GCAATG	1 cut(s)	135
BseMII	CTCAG	4 cut(s)	190, 264, 615, 770
BseNI	ACTGG	4 cut(s)	319, 728, 902, 968
BseSI	GKGCMC	1 cut(s)	85
BseXI	GCAGC	1 cut(s)	859
BshFI	GGCC	4 cut(s)	83, 161, 788, 967
BshNI	GGYRCC	1 cut(s)	268
BsiHKCI	CYCGRG	1 cut(s)	614
BsiSI	CCGG	2 cut(s)	182, 526
BslI	CCNNNNNNNGG	2 cut(s)	278, 772
BsmI	GAATGC	1 cut(s)	655
BsnI	GGCC	4 cut(s)	83, 161, 788, 967
BsoBI	CYCGRG	1 cut(s)	614
Bsp120I	GGGCCC	1 cut(s)	81
Bsp1286I	GDGCHC	1 cut(s)	85
Bsp1407I	TGTACA	1 cut(s)	544
Bsp143I	GATC	3 cut(s)	295, 559, 700
Bsp19I	CCATGG	1 cut(s)	956
BspACI	CCGC	5 cut(s)	5, 79, 106, 157, 279
BspANI	GGCC	4 cut(s)	83, 161, 788, 967
BspCNI	CTCAG	4 cut(s)	189, 265, 614, 771
BspHI	TCATGA	1 cut(s)	238
BspLI	GGNNCC	4 cut(s)	83, 270, 317, 726
BspMAI	CTGCAG	2 cut(s)	208, 676
BspT107I	GGYRCC	1 cut(s)	268
BspTI	CTTAAG	1 cut(s)	625
BsrBI	CCGCTC	2 cut(s)	157, 279
BsrDI	GCAATG	1 cut(s)	135
BsrGI	TGTACA	1 cut(s)	544
BsrI	ACTGG	4 cut(s)	319, 728, 902, 968
BssECI	CCNNGG	3 cut(s)	766, 876, 956
BssMI	GATC	3 cut(s)	295, 559, 700
BssT1I	CCWWGG	1 cut(s)	956
Bst2UI	CCWGG	3 cut(s)	767, 834, 877
Bst6I	CTCTTC	1 cut(s)	976
BstAFI	CTTAAG	1 cut(s)	625
BstAUI	TGTACA	1 cut(s)	544
BstC8I	GCNNGC	3 cut(s)	9, 81, 159
BstDEI	CTNAG	5 cut(s)	142, 176, 273, 601, 779
BstDSI	CCRYGG	1 cut(s)	956
BstF5I	GGATG	3 cut(s)	288, 511, 886
BstHHI	GCGC	1 cut(s)	105
BstKTI	GATC	3 cut(s)	298, 562, 703
BstMBI	GATC	3 cut(s)	295, 559, 700
BstMWI	GCNNNNNNNGC	3 cut(s)	285, 881, 1060
BstNI	CCWGG	3 cut(s)	767, 834, 877
BstSCI	CCNGG	5 cut(s)	180, 524, 765, 832, 875
BstSFI	CTRYAG	2 cut(s)	204, 672
BstSLI	GKGCMC	1 cut(s)	85
BstV1I	GCAGC	1 cut(s)	859
BstX2I	RGATCY	1 cut(s)	559
BstXI	CCANNNNNNTGG	1 cut(s)	963
BstYI	RGATCY	1 cut(s)	559
BsuI	GTATCC	1 cut(s)	963
BsuRI	GGCC	4 cut(s)	83, 161, 788, 967
BtgI	CCRYGG	1 cut(s)	956
BtsCI	GGATG	3 cut(s)	288, 511, 886
BtsI	GCAGTG	1 cut(s)	98
BtsIMutI	CAGTG	1 cut(s)	98
Cac8I	GCNNGC	3 cut(s)	9, 81, 159
CciI	TCATGA	1 cut(s)	238
CfoI	GCGC	1 cut(s)	105
Cfr13I	GGNCC	7 cut(s)	81, 82, 159, 550, 668, 839, 966
CseI	GACGC	1 cut(s)	53
Csp6I	GTAC	5 cut(s)	245, 545, 795, 847, 961
CviAII	CATG	4 cut(s)	239, 772, 869, 957
CviQI	GTAC	5 cut(s)	245, 545, 795, 847, 961
DdeI	CTNAG	5 cut(s)	142, 176, 273, 601, 779
DpnI	GATC	3 cut(s)	297, 561, 702
DpnII	GATC	3 cut(s)	295, 559, 700
DriI	GACNNNNNGTC	1 cut(s)	457
EaeI	YGGCCR	1 cut(s)	786
Eam1104I	CTCTTC	1 cut(s)	976
Eam1105I	GACNNNNNGTC	1 cut(s)	457
EarI	CTCTTC	1 cut(s)	976
Eco130I	CCWWGG	1 cut(s)	956
Eco24I	GRGCYC	1 cut(s)	85
Eco47I	GGWCC	3 cut(s)	550, 668, 839
Eco57I	CTGAAG	2 cut(s)	411, 737
Eco88I	CYCGRG	1 cut(s)	614
EcoO109I	RGGNCCY	1 cut(s)	82
EcoRII	CCWGG	3 cut(s)	765, 832, 875
EcoT14I	CCWWGG	1 cut(s)	956
EcoT38I	GRGCYC	1 cut(s)	85
ErhI	CCWWGG	1 cut(s)	956
FaeI	CATG	4 cut(s)	242, 775, 872, 960
FalI	AAGNNNNNCTT	2 cut(s)	363, 395
FatI	CATG	4 cut(s)	238, 771, 868, 956
FauI	CCCGC	2 cut(s)	72, 150
Fnu4HI	GCNGC	3 cut(s)	5, 106, 873
FokI	GGATG	3 cut(s)	275, 518, 893
FriOI	GRGCYC	1 cut(s)	85
Fsp4HI	GCNGC	3 cut(s)	5, 106, 873
FspBI	CTAG	1 cut(s)	86
GlaI	GCGC	1 cut(s)	104
GluI	GCNGC	3 cut(s)	5, 106, 873
GsuI	CTGGAG	3 cut(s)	59, 334, 749
HaeIII	GGCC	4 cut(s)	83, 161, 788, 967
HapII	CCGG	2 cut(s)	182, 526
HgaI	GACGC	1 cut(s)	53
HhaI	GCGC	1 cut(s)	105
Hin1II	CATG	4 cut(s)	242, 775, 872, 960
Hin6I	GCGC	1 cut(s)	103
HinP1I	GCGC	1 cut(s)	103
HincII	GTYRAC	1 cut(s)	607
HindII	GTYRAC	1 cut(s)	607
HindIII	AAGCTT	1 cut(s)	9
HinfI	GANTC	2 cut(s)	405, 479
HpaII	CCGG	2 cut(s)	182, 526
HphI	GGTGA	1 cut(s)	43
Hpy166II	GTNNAC	2 cut(s)	129, 607
Hpy188I	TCNGA	3 cut(s)	300, 391, 944
Hpy188III	TCNNGA	8 cut(s)	41, 64, 239, 313, 445, 500, 616, 646
Hpy8I	GTNNAC	2 cut(s)	129, 607
Hpy99I	CGWCG	1 cut(s)	47
HpyAV	CCTTC	2 cut(s)	407, 712
HpyCH4V	TGCA	8 cut(s)	118, 194, 206, 216, 329, 674, 698, 999
HpyF10VI	GCNNNNNNNGC	3 cut(s)	285, 881, 1060
HpyF3I	CTNAG	5 cut(s)	142, 176, 273, 601, 779
Hsp92II	CATG	4 cut(s)	242, 775, 872, 960
HspAI	GCGC	1 cut(s)	103
Kzo9I	GATC	3 cut(s)	295, 559, 700
LmnI	GCTCC	3 cut(s)	315, 741, 775
Lsp1109I	GCAGC	1 cut(s)	859
LweI	GCATC	4 cut(s)	181, 297, 338, 871
MaeI	CTAG	1 cut(s)	86
MalI	GATC	3 cut(s)	297, 561, 702
MbiI	CCGCTC	2 cut(s)	157, 279
MboI	GATC	3 cut(s)	295, 559, 700
MboII	GAAGA	5 cut(s)	79, 197, 488, 931, 963
MflI	RGATCY	1 cut(s)	559
MhlI	GDGCHC	1 cut(s)	85
MlsI	TGGCCA	1 cut(s)	788
MluCI	AATT	5 cut(s)	171, 195, 537, 632, 982
MluNI	TGGCCA	1 cut(s)	788
MmeI	TCCRAC	2 cut(s)	331, 959
MnlI	CCTC	7 cut(s)	33, 106, 202, 494, 496, 927, 979
Mox20I	TGGCCA	1 cut(s)	788
MroXI	GAANNNNTTC	1 cut(s)	396
MscI	TGGCCA	1 cut(s)	788
MseI	TTAA	6 cut(s)	530, 626, 756, 803, 1031, 1072
Msp20I	TGGCCA	1 cut(s)	788
MspA1I	CMGCKG	1 cut(s)	79
MspCI	CTTAAG	1 cut(s)	625
MspI	CCGG	2 cut(s)	182, 526
MspR9I	CCNGG	5 cut(s)	182, 526, 767, 834, 877
Mva1269I	GAATGC	1 cut(s)	655
MvaI	CCWGG	3 cut(s)	767, 834, 877
MwoI	GCNNNNNNNGC	3 cut(s)	285, 881, 1060
NciI	CCSGG	2 cut(s)	182, 526
NcoI	CCATGG	1 cut(s)	956
NdeII	GATC	3 cut(s)	295, 559, 700
NlaIII	CATG	4 cut(s)	242, 775, 872, 960
NlaIV	GGNNCC	4 cut(s)	83, 270, 317, 726
PaeR7I	CTCGAG	1 cut(s)	614
PagI	TCATGA	1 cut(s)	238
PctI	GAATGC	1 cut(s)	655
PdmI	GAANNNNTTC	1 cut(s)	396
PfeI	GAWTC	2 cut(s)	405, 479
PflMI	CCANNNNNTGG	1 cut(s)	772
PkrI	GCNGC	3 cut(s)	6, 107, 874
PshBI	ATTAAT	1 cut(s)	1031
PsiI	TTATAA	2 cut(s)	597, 929
Psp6I	CCWGG	3 cut(s)	765, 832, 875
PspGI	CCWGG	3 cut(s)	765, 832, 875
PspN4I	GGNNCC	4 cut(s)	83, 270, 317, 726
PspOMI	GGGCCC	1 cut(s)	81
PspPI	GGNCC	7 cut(s)	81, 82, 159, 550, 668, 839, 966
PstI	CTGCAG	2 cut(s)	208, 676
PsuI	RGATCY	1 cut(s)	559
RsaI	GTAC	5 cut(s)	246, 546, 796, 848, 962
RsaNI	GTAC	5 cut(s)	245, 545, 795, 847, 961
SaqAI	TTAA	6 cut(s)	530, 626, 756, 803, 1031, 1072
SatI	GCNGC	3 cut(s)	5, 106, 873
Sau3AI	GATC	3 cut(s)	295, 559, 700
Sau96I	GGNCC	7 cut(s)	81, 82, 159, 550, 668, 839, 966
ScrFI	CCNGG	5 cut(s)	182, 526, 767, 834, 877
SduI	GDGCHC	1 cut(s)	85
SfaNI	GCATC	4 cut(s)	181, 297, 338, 871
SfcI	CTRYAG	2 cut(s)	204, 672
Sfr274I	CTCGAG	1 cut(s)	614
SinI	GGWCC	3 cut(s)	550, 668, 839
SlaI	CTCGAG	1 cut(s)	614
SmlI	CTYRAG	3 cut(s)	500, 614, 625
SmoI	CTYRAG	3 cut(s)	500, 614, 625
Sse9I	AATT	5 cut(s)	171, 195, 537, 632, 982
SsiI	CCGC	5 cut(s)	5, 79, 106, 157, 279
SspMI	CTAG	1 cut(s)	86
StyD4I	CCNGG	5 cut(s)	180, 524, 765, 832, 875
StyI	CCWWGG	1 cut(s)	956
TaqI	TCGA	5 cut(s)	25, 42, 63, 615, 919
TasI	AATT	5 cut(s)	171, 195, 537, 632, 982
TatI	WGTACW	3 cut(s)	244, 544, 794
TauI	GCSGC	2 cut(s)	7, 108
TfiI	GAWTC	2 cut(s)	405, 479
Tru1I	TTAA	6 cut(s)	530, 626, 756, 803, 1031, 1072
Tru9I	TTAA	6 cut(s)	530, 626, 756, 803, 1031, 1072
TscAI	CASTG	1 cut(s)	105
TseI	GCWGC	1 cut(s)	872
TspDTI	ATGAA	1 cut(s)	227
TspRI	CASTG	1 cut(s)	105
Van91I	CCANNNNNTGG	1 cut(s)	772
Vha464I	CTTAAG	1 cut(s)	625
VpaK11BI	GGWCC	3 cut(s)	550, 668, 839
VspI	ATTAAT	1 cut(s)	1031
XapI	RAATTY	2 cut(s)	537, 982
XhoI	CTCGAG	1 cut(s)	614
XmnI	GAANNNNTTC	1 cut(s)	396
XspI	CTAG	1 cut(s)	86

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.