Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0003929

Physical Location & Seq

Genomic Coordinates Reverse (-)

69691379 .. 69697581

Gene Structure 6203 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG432800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 756 bp

ATGTTTTTTACCCAACAAACTTATCAATTGTATTGTCTGCACATTTGCAGGATTGACATTCAGTCAAATACAAGGCGGTTTGAATCCCTCTTTCTTTATCTTCTTGAGGATGTTGCTTTGGAACCCGCCCGGTTAAATAAAATTCCTGTACAGGTCCAGCGAGATCTGTATCTTTTACTTTCAAGGTTTATATTCTTTTATAACTCAGGTAGGCTTTCTGGTAAAGAATTTTCAACCCCTGAAACAATAAATTGCAAATTCTTCTGTAATGTGTTGATTCATGCAGTTGACAAACTTGAGAGCTTCTTAAGGCACTTTCCCGTTTTCCCGAATGCTTTTCTGGTTGGTGGTCCTGCAGACTTCTTTGTTATTGAACTTGCAGATCAGCTTCAAAAATTGAAGGTGGAACCGGTATTGCTCCATTACTTTTCACACATTAAAGTTCTCCAGGGCATGGAGCTGAGAATGGCCACAAGTACAAGGTTAAAGACTTGTTTGTATAGCTTCACTTCTCCTGGTGGTCCAATGTACCCTACAAGAGTTGTTCGTCATGCTGCCTGGGATGCTTTAGATTTTCTTTTTCCAGTCGGGCAATACCCTCGACATCTTATAAGCCTGTTCTTCCGGTTGTTGTATCCGTGGTACTGGCCCTCGTCTTGTTGGAATTTTGTGATGGATTGCATAAAGGCAGTATTGTATTCTCTGTTGGGATTAATCTATTCAAGTTTAGAGAAGCTGAAAAAGCCAAAGTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

251

Amino Acids

29.5

Weight (kDa)

9.12

Isoelectric Point (pI)

44.49

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003929)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G59960 AT5G59960 AT5G59960
fragaria_vesca	FvH4_3g35470 FvH4_3g35470
malus_domestica	MD03G1097100.v1.1 MD11G1143700.v1.1
prunus_persica	Prupe.4G098100_v2.0.a1 Prupe.6G081500_v2.0.a1 Prupe.6G081500_v2.0.a1 Prupe.6G081500_v2.0.a1
pyrus_communis	pycom03g08010 pycom11g09330
rosa_chinensis	RchiOBHm_Chr1g0369801 RchiOBHm_Chr5g0063631
rosa_laevigata	RLG00000029314 RLG00000035658
rosa_multiflora	Rmu_sc0000368.1_g000040 Rmu_ssc0000309.1_g000060
rosa_roxburghii	Rroxscaffold_1G00017170 Rroxscaffold_2G00129250
rosa_rugosa	Rorug05G0358400 Rorug05G0358500 Rorug05G0358500 Rorug05G0358600
rosa_samantha	Rh2CG479400 Rh3DG316400 Rh5AG417200 Rh5BG432800 Rh5CG456000 Rh5DG446200 Rh6CG100700
rosa_wichuraiana	Rw3G025090 Rw5G039210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	201, 611
AccB7I	CCANNNNNTGG	1 cut(s)	454
AciI	CCGC	2 cut(s)	76, 126
AcoI	YGGCCR	1 cut(s)	468
AcsI	RAATTY	4 cut(s)	141, 227, 257, 664
AfaI	GTAC	4 cut(s)	150, 478, 530, 644
AfiI	CCNNNNNNNGG	1 cut(s)	454
AflII	CTTAAG	1 cut(s)	307
AgeI	ACCGGT	1 cut(s)	409
AgsI	TTSAA	7 cut(s)	83, 183, 234, 374, 392, 400, 723
AhdI	GACNNNNNGTC	1 cut(s)	61
AjnI	CCWGG	3 cut(s)	447, 514, 557
AluBI	AGCT	5 cut(s)	303, 388, 460, 504, 736
AluI	AGCT	5 cut(s)	303, 388, 460, 504, 736
AoxI	GGCC	2 cut(s)	468, 647
ApeKI	GCWGC	1 cut(s)	554
ApoI	RAATTY	4 cut(s)	141, 227, 257, 664
AseI	ATTAAT	1 cut(s)	713
AsiGI	ACCGGT	1 cut(s)	409
AspS9I	GGNCC	4 cut(s)	154, 350, 521, 648
AsuC2I	CCSGG	1 cut(s)	130
AvaII	GGWCC	3 cut(s)	154, 350, 521
BalI	TGGCCA	1 cut(s)	470
BbvI	GCAGC	1 cut(s)	541
BccI	CCATC	1 cut(s)	667
BcgI	CGANNNNNNTGC	2 cut(s)	581, 615
BciT130I	CCWGG	3 cut(s)	449, 516, 559
BciVI	GTATCC	1 cut(s)	645
BcnI	CCSGG	1 cut(s)	130
BfmI	CTRYAG	1 cut(s)	354
BfrI	CTTAAG	1 cut(s)	307
BfuI	GTATCC	1 cut(s)	645
BglII	AGATCT	1 cut(s)	163
BisI	GCNGC	1 cut(s)	555
BlsI	GCNGC	1 cut(s)	556
Bme1390I	CCNGG	4 cut(s)	130, 449, 516, 559
Bme18I	GGWCC	3 cut(s)	154, 350, 521
BmeRI	GACNNNNNGTC	1 cut(s)	61
BmgT120I	GGNCC	4 cut(s)	154, 350, 521, 648
BmiI	GGNNCC	2 cut(s)	123, 408
BmrFI	CCNGG	4 cut(s)	130, 449, 516, 559
BmsI	GCATC	1 cut(s)	553
BpmI	CTGGAG	1 cut(s)	431
BpuEI	CTTGAG	2 cut(s)	125, 317
BpuMI	CCSGG	1 cut(s)	130
BsaBI	GATNNNNATC	1 cut(s)	168
BsaJI	CCNNGG	3 cut(s)	448, 558, 638
BsaWI	WCCGGW	2 cut(s)	409, 624
Bsc4I	CCNNNNNNNGG	1 cut(s)	454
Bse118I	RCCGGY	1 cut(s)	409
Bse1I	ACTGG	2 cut(s)	584, 650
Bse8I	GATNNNNATC	1 cut(s)	168
BseBI	CCWGG	3 cut(s)	449, 516, 559
BseDI	CCNNGG	3 cut(s)	448, 558, 638
BseGI	GGATG	2 cut(s)	115, 568
BseJI	GATNNNNATC	1 cut(s)	168
BseLI	CCNNNNNNNGG	1 cut(s)	454
BseMII	CTCAG	2 cut(s)	219, 452
BseNI	ACTGG	2 cut(s)	584, 650
BseXI	GCAGC	1 cut(s)	541
BsgI	GTGCAG	1 cut(s)	23
BshFI	GGCC	2 cut(s)	470, 649
BshTI	ACCGGT	1 cut(s)	409
BsiSI	CCGG	3 cut(s)	130, 410, 625
BslI	CCNNNNNNNGG	1 cut(s)	454
BsmI	GAATGC	1 cut(s)	337
BsnI	GGCC	2 cut(s)	470, 649
Bsp1407I	TGTACA	1 cut(s)	148
Bsp143I	GATC	2 cut(s)	163, 382
BspACI	CCGC	2 cut(s)	76, 126
BspANI	GGCC	2 cut(s)	470, 649
BspCNI	CTCAG	2 cut(s)	218, 453
BspLI	GGNNCC	2 cut(s)	123, 408
BspMAI	CTGCAG	1 cut(s)	358
BspTI	CTTAAG	1 cut(s)	307
BsrFI	RCCGGY	1 cut(s)	409
BsrGI	TGTACA	1 cut(s)	148
BsrI	ACTGG	2 cut(s)	584, 650
BssAI	RCCGGY	1 cut(s)	409
BssECI	CCNNGG	3 cut(s)	448, 558, 638
BssMI	GATC	2 cut(s)	163, 382
Bst2UI	CCWGG	3 cut(s)	449, 516, 559
BstAFI	CTTAAG	1 cut(s)	307
BstAUI	TGTACA	1 cut(s)	148
BstDEI	CTNAG	2 cut(s)	205, 461
BstDSI	CCRYGG	1 cut(s)	638
BstF5I	GGATG	2 cut(s)	115, 568
BstKTI	GATC	2 cut(s)	166, 385
BstMBI	GATC	2 cut(s)	163, 382
BstMWI	GCNNNNNNNGC	2 cut(s)	563, 742
BstNI	CCWGG	3 cut(s)	449, 516, 559
BstSCI	CCNGG	4 cut(s)	128, 447, 514, 557
BstSFI	CTRYAG	1 cut(s)	354
BstV1I	GCAGC	1 cut(s)	541
BstX2I	RGATCY	1 cut(s)	163
BstYI	RGATCY	1 cut(s)	163
BsuI	GTATCC	1 cut(s)	645
BsuRI	GGCC	2 cut(s)	470, 649
BtgI	CCRYGG	1 cut(s)	638
BtsCI	GGATG	2 cut(s)	115, 568
Cfr10I	RCCGGY	1 cut(s)	409
Cfr13I	GGNCC	4 cut(s)	154, 350, 521, 648
Csp6I	GTAC	4 cut(s)	149, 477, 529, 643
CspAI	ACCGGT	1 cut(s)	409
CviAII	CATG	3 cut(s)	281, 454, 551
CviQI	GTAC	4 cut(s)	149, 477, 529, 643
DdeI	CTNAG	2 cut(s)	205, 461
DpnI	GATC	2 cut(s)	165, 384
DpnII	GATC	2 cut(s)	163, 382
DriI	GACNNNNNGTC	1 cut(s)	61
EaeI	YGGCCR	1 cut(s)	468
Eam1105I	GACNNNNNGTC	1 cut(s)	61
Eco47I	GGWCC	3 cut(s)	154, 350, 521
EcoRII	CCWGG	3 cut(s)	447, 514, 557
FaeI	CATG	3 cut(s)	284, 457, 554
FaiI	YATR	8 cut(s)	191, 201, 282, 455, 501, 552, 611, 683
FatI	CATG	3 cut(s)	280, 453, 550
FauI	CCCGC	1 cut(s)	133
Fnu4HI	GCNGC	1 cut(s)	555
FokI	GGATG	2 cut(s)	122, 575
Fsp4HI	GCNGC	1 cut(s)	555
GluI	GCNGC	1 cut(s)	555
GsuI	CTGGAG	1 cut(s)	431
HaeIII	GGCC	2 cut(s)	470, 649
HapII	CCGG	3 cut(s)	130, 410, 625
Hin1II	CATG	3 cut(s)	284, 457, 554
HincII	GTYRAC	1 cut(s)	289
HindII	GTYRAC	1 cut(s)	289
HinfI	GANTC	2 cut(s)	83, 277
HpaII	CCGG	3 cut(s)	130, 410, 625
Hpy166II	GTNNAC	1 cut(s)	289
Hpy188III	TCNNGA	2 cut(s)	104, 328
Hpy8I	GTNNAC	1 cut(s)	289
HpyAV	CCTTC	1 cut(s)	394
HpyCH4V	TGCA	7 cut(s)	40, 48, 255, 284, 356, 380, 681
HpyF10VI	GCNNNNNNNGC	2 cut(s)	563, 742
HpyF3I	CTNAG	2 cut(s)	205, 461
Hsp92II	CATG	3 cut(s)	284, 457, 554
Kzo9I	GATC	2 cut(s)	163, 382
LmnI	GCTCC	2 cut(s)	423, 457
Lsp1109I	GCAGC	1 cut(s)	541
LweI	GCATC	1 cut(s)	553
MalI	GATC	2 cut(s)	165, 384
MboI	GATC	2 cut(s)	163, 382
MboII	GAAGA	3 cut(s)	92, 253, 613
MfeI	CAATTG	1 cut(s)	26
MflI	RGATCY	1 cut(s)	163
MlsI	TGGCCA	1 cut(s)	470
MluCI	AATT	7 cut(s)	26, 141, 227, 250, 257, 395, 664
MluNI	TGGCCA	1 cut(s)	470
MmeI	TCCRAC	1 cut(s)	641
MnlI	CCTC	4 cut(s)	98, 100, 609, 661
Mox20I	TGGCCA	1 cut(s)	470
MscI	TGGCCA	1 cut(s)	470
MseI	TTAA	5 cut(s)	134, 308, 438, 485, 713
Msp20I	TGGCCA	1 cut(s)	470
MspCI	CTTAAG	1 cut(s)	307
MspI	CCGG	3 cut(s)	130, 410, 625
MspR9I	CCNGG	4 cut(s)	130, 449, 516, 559
MunI	CAATTG	1 cut(s)	26
Mva1269I	GAATGC	1 cut(s)	337
MvaI	CCWGG	3 cut(s)	449, 516, 559
MwoI	GCNNNNNNNGC	2 cut(s)	563, 742
NciI	CCSGG	1 cut(s)	130
NdeII	GATC	2 cut(s)	163, 382
NlaIII	CATG	3 cut(s)	284, 457, 554
NlaIV	GGNNCC	2 cut(s)	123, 408
PctI	GAATGC	1 cut(s)	337
PfeI	GAWTC	2 cut(s)	83, 277
PflMI	CCANNNNNTGG	1 cut(s)	454
PinAI	ACCGGT	1 cut(s)	409
PkrI	GCNGC	1 cut(s)	556
PshBI	ATTAAT	1 cut(s)	713
PsiI	TTATAA	2 cut(s)	201, 611
Psp6I	CCWGG	3 cut(s)	447, 514, 557
PspGI	CCWGG	3 cut(s)	447, 514, 557
PspN4I	GGNNCC	2 cut(s)	123, 408
PspPI	GGNCC	4 cut(s)	154, 350, 521, 648
PstI	CTGCAG	1 cut(s)	358
PsuI	RGATCY	1 cut(s)	163
RsaI	GTAC	4 cut(s)	150, 478, 530, 644
RsaNI	GTAC	4 cut(s)	149, 477, 529, 643
SaqAI	TTAA	5 cut(s)	134, 308, 438, 485, 713
SatI	GCNGC	1 cut(s)	555
Sau3AI	GATC	2 cut(s)	163, 382
Sau96I	GGNCC	4 cut(s)	154, 350, 521, 648
ScrFI	CCNGG	4 cut(s)	130, 449, 516, 559
SfaNI	GCATC	1 cut(s)	553
SfcI	CTRYAG	1 cut(s)	354
SinI	GGWCC	3 cut(s)	154, 350, 521
SmlI	CTYRAG	3 cut(s)	104, 296, 307
SmoI	CTYRAG	3 cut(s)	104, 296, 307
Sse9I	AATT	7 cut(s)	26, 141, 227, 250, 257, 395, 664
SsiI	CCGC	2 cut(s)	76, 126
StyD4I	CCNGG	4 cut(s)	128, 447, 514, 557
TaqI	TCGA	1 cut(s)	601
TasI	AATT	7 cut(s)	26, 141, 227, 250, 257, 395, 664
TatI	WGTACW	2 cut(s)	148, 476
TfiI	GAWTC	2 cut(s)	83, 277
Tru1I	TTAA	5 cut(s)	134, 308, 438, 485, 713
Tru9I	TTAA	5 cut(s)	134, 308, 438, 485, 713
TseI	GCWGC	1 cut(s)	554
TspDTI	ATGAA	1 cut(s)	269
TspGWI	ACGGA	1 cut(s)	627
Van91I	CCANNNNNTGG	1 cut(s)	454
Vha464I	CTTAAG	1 cut(s)	307
VpaK11BI	GGWCC	3 cut(s)	154, 350, 521
VspI	ATTAAT	1 cut(s)	713
XapI	RAATTY	4 cut(s)	141, 227, 257, 664

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.