FvH4_3g35470

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0003929
Physical Location & Seq
Reverse (-)
30509718 .. 30515043
5326 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g35470.t1

Sequence Viewer

Length: 1074 bp
ATGCCGCAAGGTTCTTTCACGCCGCGGAGCTCTGCCTATCTCGACGCTCTCACTCAAGAAATCGAGAAGAAGCTCCAGCGGGCCCTAGCTTCTCCATCACTGCGGCGCAACCTGTTGCAGGAGTTGTTTACTGACATTGCGTTAGAGATTGATGAGCGGGCCAAAGATATAATTCTCAGCGGGGAAGATGATGCTATTTCTCCTGCAGAGGATTGCATTTATGATCAGCTATGCTTTCATGATGTGCTTGCTGACTATTATGTTTGGGTACCTGAGAGTGGAAAACGCATCCTCGATCTGATTGTCCAACTCTGGAGCCAGTCATTTGCATCTCACATTTTCGCCTTGTTATTTCACAAATGGCTTTTTGAAGTTCAACTTGACAACTCTGAAGTTCTACTGCGGTTCTCATCTGCTCTTGTTCAAGGTGCTACAAATGTTTTCTGGATTGACATTCAGTCAAATATGCGGCGATTTGAATCCCTCTTTATTTATCTTCTCGAGGATGTTGCTTTGGAATCCACCCTGTTAAATAAAATTCCTGTACAGGTCCAGCGTGATCTGTATCTTTTACTTTCAAGGTTCATATTCTTTTATAACAAAGTTGACAAACTTGAGAGCTTCTTAAGGCAATTTCCTGTTTTCCCGAATGCTTTTCTGGTTGGTGGTCCTGCAGACTTCTTTGTTATTGAACTTGCAGATCAGCTTCAAAAACTGAAGGTGGAACCGGTATTGCTCCATTACTTCTCACACATTAAAGTTCTCCAGGGTATGGAGCTGAGAATGGCCACAAGTACAAGATTAAAGACTTGTTTGTATAGCTTCACTTCTCCTGGTGGTCCAATGTACCCTACAAGAGCTGTTCGTCATGCTGCCTGGGATGCTTTAGATTTTCTTTTTCCAGTTGGGCGATACCCTCGACATCTCATAAGTCTGTTCTTCCGATTGTTGTATCCATGGTACTGGCCCTCTTCTTGTTGGAATTTTGTGATGGATTGCATAAAGGCAGTATTGTATTCGCTATTGGGCTTAATCTATTCAAGTTTAGAGAAGCTGAAAAGGCCGAAGTTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

358

Amino Acids

41.54

Weight (kDa)

6.19

Isoelectric Point (pI)

57.53

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 597
Acc65I GGTACC 1 cut(s) 268
AccB1I GGYRCC 1 cut(s) 268
AccB7I CCANNNNNTGG 1 cut(s) 772
AccBSI CCGCTC 1 cut(s) 157
AccII CGCG 1 cut(s) 25
AciI CCGC 9 cut(s) 5, 23, 25, 79, 103, 157, 180, 403, 469
AcoI YGGCCR 1 cut(s) 786
AcsI RAATTY 2 cut(s) 537, 982
AcuI CTGAAG 2 cut(s) 411, 737
AfaI GTAC 5 cut(s) 270, 546, 796, 848, 962
AfiI CCNNNNNNNGG 3 cut(s) 118, 278, 772
AflII CTTAAG 1 cut(s) 625
AgeI ACCGGT 1 cut(s) 727
AgsI TTSAA 8 cut(s) 371, 377, 425, 479, 579, 692, 710, 1041
AhdI GACNNNNNGTC 1 cut(s) 457
AjnI CCWGG 3 cut(s) 765, 832, 875
Alw21I GWGCWC 1 cut(s) 32
Ama87I CYCGRG 1 cut(s) 500
AoxI GGCC 5 cut(s) 81, 159, 786, 965, 1061
ApaI GGGCCC 1 cut(s) 85
ApeKI GCWGC 1 cut(s) 872
ApoI RAATTY 2 cut(s) 537, 982
AsiGI ACCGGT 1 cut(s) 727
Asp718I GGTACC 1 cut(s) 268
AspLEI GCGC 1 cut(s) 108
AspS9I GGNCC 7 cut(s) 81, 82, 159, 550, 668, 839, 966
AvaI CYCGRG 1 cut(s) 500
AvaII GGWCC 3 cut(s) 550, 668, 839
BaeGI GKGCMC 1 cut(s) 85
BalI TGGCCA 1 cut(s) 788
BanI GGYRCC 1 cut(s) 268
BanII GRGCYC 2 cut(s) 32, 85
Bbv12I GWGCWC 1 cut(s) 32
BbvI GCAGC 1 cut(s) 859
BccI CCATC 2 cut(s) 103, 985
BcgI CGANNNNNNTGC 2 cut(s) 491, 525
BciT130I CCWGG 3 cut(s) 767, 834, 877
BciVI GTATCC 1 cut(s) 963
BclI TGATCA 1 cut(s) 223
BfaI CTAG 1 cut(s) 86
BfmI CTRYAG 2 cut(s) 204, 672
BfrI CTTAAG 1 cut(s) 625
BfuI GTATCC 1 cut(s) 963
BisI GCNGC 5 cut(s) 5, 23, 104, 470, 873
BlsI GCNGC 5 cut(s) 6, 24, 105, 471, 874
Bme1390I CCNGG 3 cut(s) 767, 834, 877
Bme18I GGWCC 3 cut(s) 550, 668, 839
BmeRI GACNNNNNGTC 1 cut(s) 457
BmeT110I CYCGRG 1 cut(s) 500
BmgT120I GGNCC 7 cut(s) 81, 82, 159, 550, 668, 839, 966
BmiI GGNNCC 4 cut(s) 83, 270, 317, 726
BmrFI CCNGG 3 cut(s) 767, 834, 877
BmsI GCATC 4 cut(s) 181, 297, 338, 871
BpmI CTGGAG 3 cut(s) 59, 334, 749
BpuEI CTTGAG 2 cut(s) 39, 635
BsaBI GATNNNNATC 2 cut(s) 478, 564
BsaJI CCNNGG 4 cut(s) 23, 766, 876, 956
BsaWI WCCGGW 1 cut(s) 727
Bsc4I CCNNNNNNNGG 3 cut(s) 118, 278, 772
Bse118I RCCGGY 1 cut(s) 727
Bse1I ACTGG 3 cut(s) 319, 902, 968
Bse3DI GCAATG 1 cut(s) 135
Bse8I GATNNNNATC 2 cut(s) 478, 564
BseBI CCWGG 3 cut(s) 767, 834, 877
BseDI CCNNGG 4 cut(s) 23, 766, 876, 956
BseGI GGATG 3 cut(s) 288, 511, 886
BseJI GATNNNNATC 2 cut(s) 478, 564
BseLI CCNNNNNNNGG 3 cut(s) 118, 278, 772
BseMI GCAATG 1 cut(s) 135
BseMII CTCAG 3 cut(s) 190, 264, 770
BseNI ACTGG 3 cut(s) 319, 902, 968
BseSI GKGCMC 1 cut(s) 85
BseXI GCAGC 1 cut(s) 859
Bsh1236I CGCG 1 cut(s) 25
BshFI GGCC 5 cut(s) 83, 161, 788, 967, 1063
BshNI GGYRCC 1 cut(s) 268
BshTI ACCGGT 1 cut(s) 727
BsiHKAI GWGCWC 1 cut(s) 32
BsiHKCI CYCGRG 1 cut(s) 500
BsiSI CCGG 1 cut(s) 728
BslI CCNNNNNNNGG 3 cut(s) 118, 278, 772
BsmI GAATGC 1 cut(s) 655
BsnI GGCC 5 cut(s) 83, 161, 788, 967, 1063
BsoBI CYCGRG 1 cut(s) 500
Bsp120I GGGCCC 1 cut(s) 81
Bsp1286I GDGCHC 2 cut(s) 32, 85
Bsp1407I TGTACA 1 cut(s) 544
Bsp143I GATC 4 cut(s) 223, 295, 559, 700
Bsp19I CCATGG 1 cut(s) 956
BspACI CCGC 9 cut(s) 5, 23, 25, 79, 103, 157, 180, 403, 469
BspANI GGCC 5 cut(s) 83, 161, 788, 967, 1063
BspCNI CTCAG 3 cut(s) 189, 265, 771
BspFNI CGCG 1 cut(s) 25
BspHI TCATGA 1 cut(s) 238
BspLI GGNNCC 4 cut(s) 83, 270, 317, 726
BspMAI CTGCAG 2 cut(s) 208, 676
BspT107I GGYRCC 1 cut(s) 268
BspTI CTTAAG 1 cut(s) 625
BsrBI CCGCTC 1 cut(s) 157
BsrDI GCAATG 1 cut(s) 135
BsrFI RCCGGY 1 cut(s) 727
BsrGI TGTACA 1 cut(s) 544
BsrI ACTGG 3 cut(s) 319, 902, 968
BssAI RCCGGY 1 cut(s) 727
BssECI CCNNGG 4 cut(s) 23, 766, 876, 956
BssMI GATC 4 cut(s) 223, 295, 559, 700
BssT1I CCWWGG 1 cut(s) 956
Bst2UI CCWGG 3 cut(s) 767, 834, 877
Bst6I CTCTTC 1 cut(s) 976
BstAFI CTTAAG 1 cut(s) 625
BstAUI TGTACA 1 cut(s) 544
BstC8I GCNNGC 3 cut(s) 81, 159, 249
BstDEI CTNAG 3 cut(s) 176, 273, 779
BstDSI CCRYGG 2 cut(s) 23, 956
BstENI CCTNNNNNAGG 1 cut(s) 116
BstF5I GGATG 3 cut(s) 288, 511, 886
BstFNI CGCG 1 cut(s) 25
BstHHI GCGC 1 cut(s) 108
BstKTI GATC 4 cut(s) 226, 298, 562, 703
BstMBI GATC 4 cut(s) 223, 295, 559, 700
BstMWI GCNNNNNNNGC 2 cut(s) 881, 1060
BstNI CCWGG 3 cut(s) 767, 834, 877
BstSCI CCNGG 3 cut(s) 765, 832, 875
BstSFI CTRYAG 2 cut(s) 204, 672
BstSLI GKGCMC 1 cut(s) 85
BstUI CGCG 1 cut(s) 25
BstV1I GCAGC 1 cut(s) 859
BstXI CCANNNNNNTGG 1 cut(s) 963
BsuI GTATCC 1 cut(s) 963
BsuRI GGCC 5 cut(s) 83, 161, 788, 967, 1063
BtgI CCRYGG 2 cut(s) 23, 956
BtsCI GGATG 3 cut(s) 288, 511, 886
BtsI GCAGTG 1 cut(s) 98
BtsIMutI CAGTG 1 cut(s) 98
Cac8I GCNNGC 3 cut(s) 81, 159, 249
CciI TCATGA 1 cut(s) 238
CfoI GCGC 1 cut(s) 108
Cfr10I RCCGGY 1 cut(s) 727
Cfr13I GGNCC 7 cut(s) 81, 82, 159, 550, 668, 839, 966
Cfr42I CCGCGG 1 cut(s) 26
CseI GACGC 1 cut(s) 53
Csp6I GTAC 5 cut(s) 269, 545, 795, 847, 961
CspAI ACCGGT 1 cut(s) 727
CviAII CATG 3 cut(s) 239, 869, 957
CviQI GTAC 5 cut(s) 269, 545, 795, 847, 961
DdeI CTNAG 3 cut(s) 176, 273, 779
DpnI GATC 4 cut(s) 225, 297, 561, 702
DpnII GATC 4 cut(s) 223, 295, 559, 700
DriI GACNNNNNGTC 1 cut(s) 457
EaeI YGGCCR 1 cut(s) 786
Eam1104I CTCTTC 1 cut(s) 976
Eam1105I GACNNNNNGTC 1 cut(s) 457
EarI CTCTTC 1 cut(s) 976
Ecl136II GAGCTC 1 cut(s) 30
Eco130I CCWWGG 1 cut(s) 956
Eco24I GRGCYC 2 cut(s) 32, 85
Eco47I GGWCC 3 cut(s) 550, 668, 839
Eco53kI GAGCTC 1 cut(s) 30
Eco57I CTGAAG 2 cut(s) 411, 737
Eco88I CYCGRG 1 cut(s) 500
EcoICRI GAGCTC 1 cut(s) 30
EcoNI CCTNNNNNAGG 1 cut(s) 116
EcoO109I RGGNCCY 1 cut(s) 82
EcoRII CCWGG 3 cut(s) 765, 832, 875
EcoT14I CCWWGG 1 cut(s) 956
EcoT38I GRGCYC 2 cut(s) 32, 85
ErhI CCWWGG 1 cut(s) 956
FaeI CATG 3 cut(s) 242, 872, 960
FalI AAGNNNNNCTT 2 cut(s) 363, 395
FatI CATG 3 cut(s) 238, 868, 956
FauI CCCGC 3 cut(s) 72, 150, 173
FbaI TGATCA 1 cut(s) 223
Fnu4HI GCNGC 5 cut(s) 5, 23, 104, 470, 873
FokI GGATG 3 cut(s) 275, 518, 893
FriOI GRGCYC 2 cut(s) 32, 85
Fsp4HI GCNGC 5 cut(s) 5, 23, 104, 470, 873
FspBI CTAG 1 cut(s) 86
GlaI GCGC 1 cut(s) 107
GluI GCNGC 5 cut(s) 5, 23, 104, 470, 873
GsuI CTGGAG 3 cut(s) 59, 334, 749
HaeIII GGCC 5 cut(s) 83, 161, 788, 967, 1063
HapII CCGG 1 cut(s) 728
HgaI GACGC 1 cut(s) 53
HhaI GCGC 1 cut(s) 108
Hin1II CATG 3 cut(s) 242, 872, 960
Hin6I GCGC 1 cut(s) 106
HinP1I GCGC 1 cut(s) 106
HincII GTYRAC 1 cut(s) 607
HindII GTYRAC 1 cut(s) 607
HinfI GANTC 2 cut(s) 479, 518
HpaII CCGG 1 cut(s) 728
Hpy166II GTNNAC 2 cut(s) 129, 607
Hpy188I TCNGA 3 cut(s) 300, 391, 944
Hpy188III TCNNGA 8 cut(s) 41, 56, 64, 239, 313, 445, 500, 646
Hpy8I GTNNAC 2 cut(s) 129, 607
Hpy99I CGWCG 1 cut(s) 47
HpyAV CCTTC 1 cut(s) 712
HpyCH4V TGCA 7 cut(s) 118, 206, 216, 329, 674, 698, 999
HpyF10VI GCNNNNNNNGC 2 cut(s) 881, 1060
HpyF3I CTNAG 3 cut(s) 176, 273, 779
Hsp92II CATG 3 cut(s) 242, 872, 960
HspAI GCGC 1 cut(s) 106
KpnI GGTACC 1 cut(s) 272
Ksp22I TGATCA 1 cut(s) 223
KspI CCGCGG 1 cut(s) 26
Kzo9I GATC 4 cut(s) 223, 295, 559, 700
LmnI GCTCC 5 cut(s) 27, 78, 315, 741, 775
Lsp1109I GCAGC 1 cut(s) 859
LweI GCATC 4 cut(s) 181, 297, 338, 871
MaeI CTAG 1 cut(s) 86
MalI GATC 4 cut(s) 225, 297, 561, 702
MbiI CCGCTC 1 cut(s) 157
MboI GATC 4 cut(s) 223, 295, 559, 700
MboII GAAGA 5 cut(s) 79, 197, 488, 931, 963
MhlI GDGCHC 2 cut(s) 32, 85
MlsI TGGCCA 1 cut(s) 788
MluCI AATT 4 cut(s) 171, 537, 632, 982
MluNI TGGCCA 1 cut(s) 788
MmeI TCCRAC 2 cut(s) 331, 959
MnlI CCTC 6 cut(s) 202, 302, 494, 496, 927, 979
Mox20I TGGCCA 1 cut(s) 788
MscI TGGCCA 1 cut(s) 788
MseI TTAA 6 cut(s) 530, 626, 756, 803, 1031, 1072
Msp20I TGGCCA 1 cut(s) 788
MspA1I CMGCKG 3 cut(s) 25, 79, 180
MspCI CTTAAG 1 cut(s) 625
MspI CCGG 1 cut(s) 728
MspR9I CCNGG 3 cut(s) 767, 834, 877
Mva1269I GAATGC 1 cut(s) 655
MvaI CCWGG 3 cut(s) 767, 834, 877
MvnI CGCG 1 cut(s) 25
MwoI GCNNNNNNNGC 2 cut(s) 881, 1060
NcoI CCATGG 1 cut(s) 956
NdeII GATC 4 cut(s) 223, 295, 559, 700
NlaIII CATG 3 cut(s) 242, 872, 960
NlaIV GGNNCC 4 cut(s) 83, 270, 317, 726
PaeR7I CTCGAG 1 cut(s) 500
PagI TCATGA 1 cut(s) 238
PctI GAATGC 1 cut(s) 655
PfeI GAWTC 2 cut(s) 479, 518
PflMI CCANNNNNTGG 1 cut(s) 772
PinAI ACCGGT 1 cut(s) 727
PkrI GCNGC 5 cut(s) 6, 24, 105, 471, 874
PsiI TTATAA 1 cut(s) 597
Psp124BI GAGCTC 1 cut(s) 32
Psp6I CCWGG 3 cut(s) 765, 832, 875
PspGI CCWGG 3 cut(s) 765, 832, 875
PspN4I GGNNCC 4 cut(s) 83, 270, 317, 726
PspOMI GGGCCC 1 cut(s) 81
PspPI GGNCC 7 cut(s) 81, 82, 159, 550, 668, 839, 966
PstI CTGCAG 2 cut(s) 208, 676
RsaI GTAC 5 cut(s) 270, 546, 796, 848, 962
RsaNI GTAC 5 cut(s) 269, 545, 795, 847, 961
SacI GAGCTC 1 cut(s) 32
SacII CCGCGG 1 cut(s) 26
SaqAI TTAA 6 cut(s) 530, 626, 756, 803, 1031, 1072
SatI GCNGC 5 cut(s) 5, 23, 104, 470, 873
Sau3AI GATC 4 cut(s) 223, 295, 559, 700
Sau96I GGNCC 7 cut(s) 81, 82, 159, 550, 668, 839, 966
ScrFI CCNGG 3 cut(s) 767, 834, 877
SduI GDGCHC 2 cut(s) 32, 85
SfaNI GCATC 4 cut(s) 181, 297, 338, 871
SfcI CTRYAG 2 cut(s) 204, 672
Sfr274I CTCGAG 1 cut(s) 500
Sfr303I CCGCGG 1 cut(s) 26
SgrBI CCGCGG 1 cut(s) 26
SinI GGWCC 3 cut(s) 550, 668, 839
SlaI CTCGAG 1 cut(s) 500
SmlI CTYRAG 4 cut(s) 54, 500, 614, 625
SmoI CTYRAG 4 cut(s) 54, 500, 614, 625
Sse9I AATT 4 cut(s) 171, 537, 632, 982
SsiI CCGC 9 cut(s) 5, 23, 25, 79, 103, 157, 180, 403, 469
SspMI CTAG 1 cut(s) 86
SstI GAGCTC 1 cut(s) 32
StyD4I CCNGG 3 cut(s) 765, 832, 875
StyI CCWWGG 1 cut(s) 956
TaqI TCGA 5 cut(s) 42, 63, 294, 501, 919
TasI AATT 4 cut(s) 171, 537, 632, 982
TatI WGTACW 2 cut(s) 544, 794
TauI GCSGC 4 cut(s) 7, 25, 106, 472
TfiI GAWTC 2 cut(s) 479, 518
Tru1I TTAA 6 cut(s) 530, 626, 756, 803, 1031, 1072
Tru9I TTAA 6 cut(s) 530, 626, 756, 803, 1031, 1072
TscAI CASTG 1 cut(s) 105
TseI GCWGC 1 cut(s) 872
TspDTI ATGAA 2 cut(s) 227, 574
TspRI CASTG 1 cut(s) 105
Van91I CCANNNNNTGG 1 cut(s) 772
Vha464I CTTAAG 1 cut(s) 625
VpaK11BI GGWCC 3 cut(s) 550, 668, 839
XagI CCTNNNNNAGG 1 cut(s) 116
XapI RAATTY 2 cut(s) 537, 982
XhoI CTCGAG 1 cut(s) 500
XspI CTAG 1 cut(s) 86
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.