Rorug05G0358500

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0003929
Physical Location & Seq
Forward (+)
45530222 .. 45532686
2465 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0358500.1

Sequence Viewer

Length: 855 bp
ATGAGAGGAGTTGCTCTTAGAGAGGTTTGGTCTAGAGAGAACTTAGATCATCTTAGAGATGTTGTTGTTGAATGTGAATGTTCTGCCGCCCCTCCTTCCTTGTTTAGCTCGGTTTCTCCTAGCCGAAGAATAACTCTGTCTTACCACAGAAACCTTGCGCACAGGAGTTTCAGGCTTCCCAAGTTTCTCGAGTACTTGTTTGCCTATATCGCTGTTCTTTCAGCTCAGGGAAGTCCAATTGACTGGGTGAGCACACACCGTTACCACCACCAGTATACAGATACAGAGAAAGATGCTCATAGCCCTCTAAAGGGTTTTTGGTTTAGTCACATGGGATGGATTTTGGATAGCAATACGCGGTTCAGAAGATATGGAGGACTGAAAAATGTTGAAGATTTGAAAAGGCAGCCATTCTATAGGTTTCTTCATCATACGTTCTTTTTACACTCATTTATTCTTGGAGGAATTCTATATGTCCTTGGTGGGTTTCCCTTCATCGTTTGGGGAATGGGAGTGAGGATGGTAATTGTTTTCCACAGCACTTTGCTAGTAAATTCGGCTGGCCACACATGGGGGTATCAAGCATGGAATACCGGTGATCTATCTAAGAACCTTTGGTGGTTAGGATTGCTTGTACTTGGAGAAGGGTGGCACAACAACCACCACGCTTTCGAATACTCGGCTCGACAAGGCCTCGAATGGTGGCAGATTGACGTGACTTGGTACGTCATAAGATTTCTTGAAGCTCTAGGGTTGGCAAAAGATGTGAAACTACCATCCGAAGCTCATAAGAAACGCAAAACTTTAGAGACCAGAACAACCGTCGCTTCTCATGAAATAAGCTACGAAGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

284

Amino Acids

33.16

Weight (kDa)

9.15

Isoelectric Point (pI)

41.5

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FA_desaturase PF00487 34 - 240 5.4e-16 Fatty acid desaturase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 159
AccI GTMKAC 1 cut(s) 275
AccII CGCG 1 cut(s) 358
AciI CCGC 2 cut(s) 87, 358
AcoI YGGCCR 1 cut(s) 562
AcsI RAATTY 2 cut(s) 465, 553
AfaI GTAC 3 cut(s) 194, 636, 725
AfiI CCNNNNNNNGG 3 cut(s) 310, 311, 571
AgeI ACCGGT 1 cut(s) 593
AgsI TTSAA 4 cut(s) 71, 392, 400, 743
AjiI CACGTC 1 cut(s) 715
AluBI AGCT 5 cut(s) 108, 224, 746, 785, 843
AluI AGCT 5 cut(s) 108, 224, 746, 785, 843
Alw21I GWGCWC 1 cut(s) 254
Alw26I GTCTC 1 cut(s) 803
Ama87I CYCGRG 1 cut(s) 188
AoxI GGCC 2 cut(s) 562, 691
ApeKI GCWGC 1 cut(s) 406
ApoI RAATTY 2 cut(s) 465, 553
AsiGI ACCGGT 1 cut(s) 593
AspLEI GCGC 1 cut(s) 160
AsuHPI GGTGA 2 cut(s) 259, 608
AsuII TTCGAA 1 cut(s) 672
AvaI CYCGRG 1 cut(s) 188
BalI TGGCCA 1 cut(s) 564
Bbv12I GWGCWC 1 cut(s) 254
BbvI GCAGC 1 cut(s) 418
BccI CCATC 3 cut(s) 330, 514, 784
BcoDI GTCTC 1 cut(s) 803
BfaI CTAG 4 cut(s) 33, 120, 548, 749
BfmI CTRYAG 1 cut(s) 415
BisI GCNGC 2 cut(s) 87, 407
BlsI GCNGC 2 cut(s) 88, 408
BmcAI AGTACT 1 cut(s) 194
BmeT110I CYCGRG 1 cut(s) 188
BmgBI CACGTC 1 cut(s) 715
BmrI ACTGGG 1 cut(s) 253
BmsI GCATC 1 cut(s) 283
BmuI ACTGGG 1 cut(s) 253
Bpu10I CCTNAGC 1 cut(s) 225
Bpu14I TTCGAA 1 cut(s) 672
BsaI GGTCTC 1 cut(s) 803
BsaJI CCNNGG 1 cut(s) 478
BsaWI WCCGGW 1 cut(s) 593
Bsc4I CCNNNNNNNGG 3 cut(s) 310, 311, 571
Bse118I RCCGGY 1 cut(s) 593
Bse1I ACTGG 2 cut(s) 248, 271
BseDI CCNNGG 1 cut(s) 478
BseGI GGATG 3 cut(s) 341, 525, 776
BseLI CCNNNNNNNGG 3 cut(s) 310, 311, 571
BseMII CTCAG 1 cut(s) 239
BseNI ACTGG 2 cut(s) 248, 271
BseRI GAGGAG 1 cut(s) 21
BseXI GCAGC 1 cut(s) 418
Bsh1236I CGCG 1 cut(s) 358
BshFI GGCC 2 cut(s) 564, 693
BshTI ACCGGT 1 cut(s) 593
BsiHKAI GWGCWC 1 cut(s) 254
BsiHKCI CYCGRG 1 cut(s) 188
BsiSI CCGG 1 cut(s) 594
BslI CCNNNNNNNGG 3 cut(s) 310, 311, 571
BsmAI GTCTC 1 cut(s) 803
BsnI GGCC 2 cut(s) 564, 693
Bso31I GGTCTC 1 cut(s) 803
BsoBI CYCGRG 1 cut(s) 188
Bsp119I TTCGAA 1 cut(s) 672
Bsp1286I GDGCHC 1 cut(s) 254
Bsp143I GATC 2 cut(s) 46, 598
BspACI CCGC 2 cut(s) 87, 358
BspANI GGCC 2 cut(s) 564, 693
BspCNI CTCAG 1 cut(s) 238
BspFNI CGCG 1 cut(s) 358
BspHI TCATGA 1 cut(s) 832
BspT104I TTCGAA 1 cut(s) 672
BspTNI GGTCTC 1 cut(s) 803
BsrFI RCCGGY 1 cut(s) 593
BsrI ACTGG 2 cut(s) 248, 271
BssAI RCCGGY 1 cut(s) 593
BssECI CCNNGG 1 cut(s) 478
BssMI GATC 2 cut(s) 46, 598
BssNAI GTATAC 1 cut(s) 276
BssT1I CCWWGG 1 cut(s) 478
Bst1107I GTATAC 1 cut(s) 276
Bst4CI ACNGT 2 cut(s) 260, 823
BstBI TTCGAA 1 cut(s) 672
BstC8I GCNNGC 1 cut(s) 562
BstDEI CTNAG 5 cut(s) 17, 43, 53, 225, 606
BstF5I GGATG 3 cut(s) 341, 525, 776
BstFNI CGCG 1 cut(s) 358
BstHHI GCGC 1 cut(s) 160
BstKTI GATC 2 cut(s) 49, 601
BstMAI GTCTC 1 cut(s) 803
BstMBI GATC 2 cut(s) 46, 598
BstMWI GCNNNNNNNGC 1 cut(s) 209
BstSFI CTRYAG 1 cut(s) 415
BstUI CGCG 1 cut(s) 358
BstV1I GCAGC 1 cut(s) 418
BstXI CCANNNNNNTGG 1 cut(s) 243
BstZ17I GTATAC 1 cut(s) 276
BsuRI GGCC 2 cut(s) 564, 693
BtrI CACGTC 1 cut(s) 715
BtsCI GGATG 3 cut(s) 341, 525, 776
Cac8I GCNNGC 1 cut(s) 562
CciI TCATGA 1 cut(s) 832
CfoI GCGC 1 cut(s) 160
Cfr10I RCCGGY 1 cut(s) 593
Csp6I GTAC 3 cut(s) 193, 635, 724
CspAI ACCGGT 1 cut(s) 593
CviAII CATG 4 cut(s) 331, 570, 585, 833
CviQI GTAC 3 cut(s) 193, 635, 724
DdeI CTNAG 5 cut(s) 17, 43, 53, 225, 606
DpnI GATC 2 cut(s) 48, 600
DpnII GATC 2 cut(s) 46, 598
EaeI YGGCCR 1 cut(s) 562
Eco130I CCWWGG 1 cut(s) 478
Eco147I AGGCCT 1 cut(s) 693
Eco31I GGTCTC 1 cut(s) 803
Eco88I CYCGRG 1 cut(s) 188
EcoRI GAATTC 1 cut(s) 465
EcoT14I CCWWGG 1 cut(s) 478
ErhI CCWWGG 1 cut(s) 478
FaeI CATG 4 cut(s) 334, 573, 588, 836
FatI CATG 4 cut(s) 330, 569, 584, 832
FblI GTMKAC 1 cut(s) 275
Fnu4HI GCNGC 2 cut(s) 87, 407
FokI GGATG 3 cut(s) 348, 532, 763
Fsp4HI GCNGC 2 cut(s) 87, 407
FspBI CTAG 4 cut(s) 33, 120, 548, 749
FspI TGCGCA 1 cut(s) 159
GlaI GCGC 1 cut(s) 159
GluI GCNGC 2 cut(s) 87, 407
HaeIII GGCC 2 cut(s) 564, 693
HapII CCGG 1 cut(s) 594
HhaI GCGC 1 cut(s) 160
Hin1II CATG 4 cut(s) 334, 573, 588, 836
Hin6I GCGC 1 cut(s) 158
HinP1I GCGC 1 cut(s) 158
HpaII CCGG 1 cut(s) 594
HphI GGTGA 2 cut(s) 259, 608
Hpy166II GTNNAC 1 cut(s) 276
Hpy188I TCNGA 2 cut(s) 365, 781
Hpy188III TCNNGA 4 cut(s) 33, 188, 740, 833
Hpy8I GTNNAC 1 cut(s) 276
Hpy99I CGWCG 1 cut(s) 827
HpyAV CCTTC 3 cut(s) 105, 502, 638
HpyCH4III ACNGT 2 cut(s) 260, 823
HpyCH4IV ACGT 3 cut(s) 434, 714, 726
HpyF10VI GCNNNNNNNGC 1 cut(s) 209
HpyF3I CTNAG 5 cut(s) 17, 43, 53, 225, 606
HpySE526I ACGT 3 cut(s) 434, 714, 726
Hsp92II CATG 4 cut(s) 334, 573, 588, 836
HspAI GCGC 1 cut(s) 158
Kzo9I GATC 2 cut(s) 46, 598
LpnPI CCDG 8 cut(s) 148, 157, 212, 229, 284, 546, 607, 826
Lsp1109I GCAGC 1 cut(s) 418
LweI GCATC 1 cut(s) 283
MaeI CTAG 4 cut(s) 33, 120, 548, 749
MaeII ACGT 3 cut(s) 434, 714, 726
MaeIII GTNAC 3 cut(s) 260, 326, 715
MalI GATC 2 cut(s) 48, 600
MboI GATC 2 cut(s) 46, 598
MboII GAAGA 4 cut(s) 138, 378, 404, 416
MfeI CAATTG 1 cut(s) 237
MhlI GDGCHC 1 cut(s) 254
MlsI TGGCCA 1 cut(s) 564
MluCI AATT 4 cut(s) 237, 465, 525, 553
MluNI TGGCCA 1 cut(s) 564
MnlI CCTC 7 cut(s) 16, 102, 315, 368, 455, 510, 704
Mox20I TGGCCA 1 cut(s) 564
MscI TGGCCA 1 cut(s) 564
MseI TTAA 1 cut(s) 853
Msp20I TGGCCA 1 cut(s) 564
MspI CCGG 1 cut(s) 594
MunI CAATTG 1 cut(s) 237
MvnI CGCG 1 cut(s) 358
MwoI GCNNNNNNNGC 1 cut(s) 209
NdeII GATC 2 cut(s) 46, 598
NlaIII CATG 4 cut(s) 334, 573, 588, 836
NmeAIII GCCGAG 1 cut(s) 659
NmuCI GTSAC 2 cut(s) 326, 715
NsbI TGCGCA 1 cut(s) 159
NspV TTCGAA 1 cut(s) 672
PaeR7I CTCGAG 1 cut(s) 188
PagI TCATGA 1 cut(s) 832
PceI AGGCCT 1 cut(s) 693
PinAI ACCGGT 1 cut(s) 593
PkrI GCNGC 2 cut(s) 88, 408
RsaI GTAC 3 cut(s) 194, 636, 725
RsaNI GTAC 3 cut(s) 193, 635, 724
SaqAI TTAA 1 cut(s) 853
SatI GCNGC 2 cut(s) 87, 407
Sau3AI GATC 2 cut(s) 46, 598
ScaI AGTACT 1 cut(s) 194
SduI GDGCHC 1 cut(s) 254
SfaNI GCATC 1 cut(s) 283
SfcI CTRYAG 1 cut(s) 415
Sfr274I CTCGAG 1 cut(s) 188
SfuI TTCGAA 1 cut(s) 672
SlaI CTCGAG 1 cut(s) 188
SmlI CTYRAG 1 cut(s) 188
SmoI CTYRAG 1 cut(s) 188
Sse9I AATT 4 cut(s) 237, 465, 525, 553
SseBI AGGCCT 1 cut(s) 693
SsiI CCGC 2 cut(s) 87, 358
SspMI CTAG 4 cut(s) 33, 120, 548, 749
StuI AGGCCT 1 cut(s) 693
StyI CCWWGG 1 cut(s) 478
TaaI ACNGT 2 cut(s) 260, 823
TaiI ACGT 3 cut(s) 437, 717, 729
TaqI TCGA 4 cut(s) 189, 672, 685, 696
TasI AATT 4 cut(s) 237, 465, 525, 553
TatI WGTACW 2 cut(s) 192, 634
TauI GCSGC 1 cut(s) 89
Tru1I TTAA 1 cut(s) 853
Tru9I TTAA 1 cut(s) 853
TseFI GTSAC 2 cut(s) 326, 715
TseI GCWGC 1 cut(s) 406
Tsp45I GTSAC 2 cut(s) 326, 715
TspDTI ATGAA 3 cut(s) 416, 484, 849
XapI RAATTY 2 cut(s) 465, 553
XbaI TCTAGA 1 cut(s) 32
XhoI CTCGAG 1 cut(s) 188
XmiI GTMKAC 1 cut(s) 275
XspI CTAG 4 cut(s) 33, 120, 548, 749
ZrmI AGTACT 1 cut(s) 194
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.