Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000368.1

Orthogroup ID

OG0003929

Physical Location & Seq

Genomic Coordinates Reverse (-)

178686 .. 181739

Gene Structure 3054 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000368.1_g000040.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 810 bp

atgccatggacatctctctattcctccctttacccaagcccgggtttagtggacccttatccattcaaactcattcatctatctctctctctctctctccaatggcgtccagtacgcccggtctccctacgccgtcgtttctgcgcttatttgcgggagcgggagtttcaaatcggccctgtagagatggagagatctggtagaggcggtgccgattttcgggaattacttcggagatcctcaggaggtccgatttcattcttgagctttacgagagttggtatttctatcatagattcaaatacaaggcggtttgaatccctctttctttatcttcttgaggatgttgctttggaacccacccggttaaataaaattcctgtacaggtccagcgagatctgtatcttttactttcaaggtttatattcttttataactcagttgacaaacttgagagcttcttaaggcactttcccgtattcccgaatgcttttctggttggtggtcctgcagacttctttgttattgaacttgcagatcagcttcaaaaattgaaggtggaaccgggtggaactctctaccgccgccgctgcaaatgggtattctcttctctcacttctccacctcaaagaccggtagtagttcttggacgtcgacgaccctcttctgttcttgaacccgatccagttttacttcaaacaccggttcttgggtcttcttctgttcttgaatttgatcttgaaagagtggttccttgggcttcgacttcggcctcggtgtctctgaaattatctgatgtcttcaagtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

269

Amino Acids

30.77

Weight (kDa)

9.89

Isoelectric Point (pI)

62.71

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003929)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G59960 AT5G59960 AT5G59960
fragaria_vesca	FvH4_3g35470 FvH4_3g35470
malus_domestica	MD03G1097100.v1.1 MD11G1143700.v1.1
prunus_persica	Prupe.4G098100_v2.0.a1 Prupe.6G081500_v2.0.a1 Prupe.6G081500_v2.0.a1 Prupe.6G081500_v2.0.a1
pyrus_communis	pycom03g08010 pycom11g09330
rosa_chinensis	RchiOBHm_Chr1g0369801 RchiOBHm_Chr5g0063631
rosa_laevigata	RLG00000029314 RLG00000035658
rosa_multiflora	Rmu_sc0000368.1_g000040 Rmu_ssc0000309.1_g000060
rosa_roxburghii	Rroxscaffold_1G00017170 Rroxscaffold_2G00129250
rosa_rugosa	Rorug05G0358400 Rorug05G0358500 Rorug05G0358500 Rorug05G0358600
rosa_samantha	Rh2CG479400 Rh3DG316400 Rh5AG417200 Rh5BG432800 Rh5CG456000 Rh5DG446200 Rh6CG100700
rosa_wichuraiana	Rw3G025090 Rw5G039210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	435
AatII	GACGTC	1 cut(s)	655
AccB1I	GGYRCC	1 cut(s)	209
AccBSI	CCGCTC	1 cut(s)	160
AccI	GTMKAC	1 cut(s)	655
AciI	CCGC	7 cut(s)	154, 160, 207, 310, 583, 586, 589
AclWI	GGATC	2 cut(s)	231, 677
AcsI	RAATTY	2 cut(s)	375, 731
AcyI	GRCGYC	2 cut(s)	106, 652
AfaI	GTAC	2 cut(s)	114, 384
AfiI	CCNNNNNNNGG	4 cut(s)	40, 41, 219, 710
AflII	CTTAAG	1 cut(s)	463
AgeI	ACCGGT	2 cut(s)	634, 703
AluBI	AGCT	3 cut(s)	267, 459, 544
AluI	AGCT	3 cut(s)	267, 459, 544
Alw26I	GTCTC	2 cut(s)	127, 786
AlwI	GGATC	2 cut(s)	231, 677
Ama87I	CYCGRG	1 cut(s)	40
AoxI	GGCC	2 cut(s)	175, 771
ApeKI	GCWGC	1 cut(s)	591
ApoI	RAATTY	2 cut(s)	375, 731
AsiGI	ACCGGT	2 cut(s)	634, 703
Asp700I	GAANNNNTTC	1 cut(s)	228
AspLEI	GCGC	1 cut(s)	146
AspS9I	GGNCC	5 cut(s)	52, 176, 248, 388, 506
AsuC2I	CCSGG	5 cut(s)	41, 42, 119, 364, 567
AvaI	CYCGRG	1 cut(s)	40
AvaII	GGWCC	4 cut(s)	52, 248, 388, 506
AxyI	CCTNAGG	1 cut(s)	241
BanI	GGYRCC	1 cut(s)	209
BbsI	GAAGAC	2 cut(s)	708, 793
BbvI	GCAGC	1 cut(s)	578
BccI	CCATC	1 cut(s)	181
BceAI	ACGGC	1 cut(s)	117
BcnI	CCSGG	5 cut(s)	41, 42, 119, 364, 567
BcoDI	GTCTC	2 cut(s)	127, 786
BfmI	CTRYAG	2 cut(s)	180, 510
BfrI	CTTAAG	1 cut(s)	463
BglII	AGATCT	2 cut(s)	194, 397
BisI	GCNGC	3 cut(s)	586, 589, 592
BlsI	GCNGC	3 cut(s)	587, 590, 593
Bme1390I	CCNGG	5 cut(s)	41, 42, 119, 364, 567
Bme18I	GGWCC	4 cut(s)	52, 248, 388, 506
BmeT110I	CYCGRG	1 cut(s)	40
BmgT120I	GGNCC	5 cut(s)	52, 176, 248, 388, 506
BmiI	GGNNCC	5 cut(s)	54, 211, 357, 564, 753
BmrFI	CCNGG	5 cut(s)	41, 42, 119, 364, 567
BpiI	GAAGAC	2 cut(s)	708, 793
BpuEI	CTTGAG	3 cut(s)	283, 359, 473
BpuMI	CCSGG	5 cut(s)	41, 42, 119, 364, 567
BsaBI	GATNNNNATC	1 cut(s)	402
BsaHI	GRCGYC	2 cut(s)	106, 652
BsaI	GGTCTC	1 cut(s)	127
BsaJI	CCNNGG	4 cut(s)	5, 40, 755, 774
BsaWI	WCCGGW	2 cut(s)	634, 703
BsaXI	ACNNNNNCTCC	2 cut(s)	149, 179
Bsc4I	CCNNNNNNNGG	4 cut(s)	40, 41, 219, 710
Bse118I	RCCGGY	2 cut(s)	634, 703
Bse1I	ACTGG	2 cut(s)	110, 686
Bse21I	CCTNAGG	1 cut(s)	241
Bse8I	GATNNNNATC	1 cut(s)	402
BseDI	CCNNGG	4 cut(s)	5, 40, 755, 774
BseGI	GGATG	1 cut(s)	349
BseJI	GATNNNNATC	1 cut(s)	402
BseLI	CCNNNNNNNGG	4 cut(s)	40, 41, 219, 710
BseMII	CTCAG	2 cut(s)	255, 453
BseNI	ACTGG	2 cut(s)	110, 686
BseXI	GCAGC	1 cut(s)	578
BshFI	GGCC	2 cut(s)	177, 773
BshNI	GGYRCC	1 cut(s)	209
BshTI	ACCGGT	2 cut(s)	634, 703
BsiHKCI	CYCGRG	1 cut(s)	40
BsiSI	CCGG	6 cut(s)	41, 119, 364, 566, 635, 704
BslI	CCNNNNNNNGG	4 cut(s)	40, 41, 219, 710
BsmAI	GTCTC	2 cut(s)	127, 786
BsmI	GAATGC	1 cut(s)	493
BsnI	GGCC	2 cut(s)	177, 773
Bso31I	GGTCTC	1 cut(s)	127
BsoBI	CYCGRG	1 cut(s)	40
Bsp1407I	TGTACA	1 cut(s)	382
Bsp143I	GATC	6 cut(s)	194, 236, 397, 538, 682, 736
Bsp19I	CCATGG	1 cut(s)	5
BspACI	CCGC	7 cut(s)	154, 160, 207, 310, 583, 586, 589
BspANI	GGCC	2 cut(s)	177, 773
BspCNI	CTCAG	2 cut(s)	254, 452
BspLI	GGNNCC	5 cut(s)	54, 211, 357, 564, 753
BspMAI	CTGCAG	1 cut(s)	514
BspPI	GGATC	2 cut(s)	231, 677
BspT107I	GGYRCC	1 cut(s)	209
BspTI	CTTAAG	1 cut(s)	463
BspTNI	GGTCTC	1 cut(s)	127
BsrBI	CCGCTC	1 cut(s)	160
BsrFI	RCCGGY	2 cut(s)	634, 703
BsrGI	TGTACA	1 cut(s)	382
BsrI	ACTGG	2 cut(s)	110, 686
BssAI	RCCGGY	2 cut(s)	634, 703
BssECI	CCNNGG	4 cut(s)	5, 40, 755, 774
BssMI	GATC	6 cut(s)	194, 236, 397, 538, 682, 736
BssNI	GRCGYC	2 cut(s)	106, 652
BssT1I	CCWWGG	2 cut(s)	5, 755
Bst6I	CTCTTC	2 cut(s)	613, 670
BstACI	GRCGYC	2 cut(s)	106, 652
BstAFI	CTTAAG	1 cut(s)	463
BstAUI	TGTACA	1 cut(s)	382
BstDEI	CTNAG	2 cut(s)	241, 439
BstDSI	CCRYGG	1 cut(s)	5
BstF5I	GGATG	1 cut(s)	349
BstHHI	GCGC	1 cut(s)	146
BstKTI	GATC	6 cut(s)	197, 239, 400, 541, 685, 739
BstMAI	GTCTC	2 cut(s)	127, 786
BstMBI	GATC	6 cut(s)	194, 236, 397, 538, 682, 736
BstMWI	GCNNNNNNNGC	1 cut(s)	591
BstSCI	CCNGG	5 cut(s)	39, 40, 117, 362, 565
BstSFI	CTRYAG	2 cut(s)	180, 510
BstV1I	GCAGC	1 cut(s)	578
BstV2I	GAAGAC	2 cut(s)	708, 793
BstX2I	RGATCY	3 cut(s)	194, 236, 397
BstYI	RGATCY	3 cut(s)	194, 236, 397
Bsu36I	CCTNAGG	1 cut(s)	241
BsuRI	GGCC	2 cut(s)	177, 773
BtgI	CCRYGG	1 cut(s)	5
BtsCI	GGATG	1 cut(s)	349
CfoI	GCGC	1 cut(s)	146
Cfr10I	RCCGGY	2 cut(s)	634, 703
Cfr13I	GGNCC	5 cut(s)	52, 176, 248, 388, 506
Cfr9I	CCCGGG	1 cut(s)	40
CseI	GACGC	1 cut(s)	95
Csp6I	GTAC	2 cut(s)	113, 383
CspAI	ACCGGT	2 cut(s)	634, 703
CviAII	CATG	1 cut(s)	6
CviJI	RGCY	7 cut(s)	39, 177, 267, 459, 544, 761, 773
CviKI_1	RGCY	7 cut(s)	39, 177, 267, 459, 544, 761, 773
CviQI	GTAC	2 cut(s)	113, 383
DdeI	CTNAG	2 cut(s)	241, 439
DpnI	GATC	6 cut(s)	196, 238, 399, 540, 684, 738
DpnII	GATC	6 cut(s)	194, 236, 397, 538, 682, 736
Eam1104I	CTCTTC	2 cut(s)	613, 670
EarI	CTCTTC	2 cut(s)	613, 670
Eco130I	CCWWGG	2 cut(s)	5, 755
Eco31I	GGTCTC	1 cut(s)	127
Eco47I	GGWCC	4 cut(s)	52, 248, 388, 506
Eco81I	CCTNAGG	1 cut(s)	241
Eco88I	CYCGRG	1 cut(s)	40
EcoT14I	CCWWGG	2 cut(s)	5, 755
ErhI	CCWWGG	2 cut(s)	5, 755
FaeI	CATG	1 cut(s)	9
FaiI	YATR	4 cut(s)	7, 293, 425, 435
FatI	CATG	1 cut(s)	5
FauI	CCCGC	2 cut(s)	147, 153
FblI	GTMKAC	1 cut(s)	655
Fnu4HI	GCNGC	3 cut(s)	586, 589, 592
FokI	GGATG	1 cut(s)	356
Fsp4HI	GCNGC	3 cut(s)	586, 589, 592
GlaI	GCGC	1 cut(s)	145
GluI	GCNGC	3 cut(s)	586, 589, 592
HaeIII	GGCC	2 cut(s)	177, 773
HapII	CCGG	6 cut(s)	41, 119, 364, 566, 635, 704
HgaI	GACGC	1 cut(s)	95
HhaI	GCGC	1 cut(s)	146
Hin1I	GRCGYC	2 cut(s)	106, 652
Hin1II	CATG	1 cut(s)	9
Hin6I	GCGC	1 cut(s)	144
HinP1I	GCGC	1 cut(s)	144
HincII	GTYRAC	2 cut(s)	445, 656
HindII	GTYRAC	2 cut(s)	445, 656
HinfI	GANTC	2 cut(s)	296, 317
HpaII	CCGG	6 cut(s)	41, 119, 364, 566, 635, 704
Hpy166II	GTNNAC	3 cut(s)	52, 445, 656
Hpy188I	TCNGA	4 cut(s)	234, 252, 786, 796
Hpy188III	TCNNGA	8 cut(s)	221, 243, 262, 338, 484, 674, 728, 740
Hpy8I	GTNNAC	3 cut(s)	52, 445, 656
Hpy99I	CGWCG	3 cut(s)	138, 657, 660
HpyAV	CCTTC	1 cut(s)	550
HpyCH4IV	ACGT	1 cut(s)	652
HpyCH4V	TGCA	3 cut(s)	512, 536, 594
HpyF10VI	GCNNNNNNNGC	1 cut(s)	591
HpyF3I	CTNAG	2 cut(s)	241, 439
HpySE526I	ACGT	1 cut(s)	652
Hsp92I	GRCGYC	2 cut(s)	106, 652
Hsp92II	CATG	1 cut(s)	9
HspAI	GCGC	1 cut(s)	144
Kzo9I	GATC	6 cut(s)	194, 236, 397, 538, 682, 736
LmnI	GCTCC	1 cut(s)	157
Lsp1109I	GCAGC	1 cut(s)	578
MaeII	ACGT	1 cut(s)	652
MalI	GATC	6 cut(s)	196, 238, 399, 540, 684, 738
MbiI	CCGCTC	1 cut(s)	160
MboI	GATC	6 cut(s)	194, 236, 397, 538, 682, 736
MboII	GAAGA	6 cut(s)	326, 600, 657, 708, 711, 793
MflI	RGATCY	3 cut(s)	194, 236, 397
MluCI	AATT	5 cut(s)	224, 375, 551, 731, 788
MnlI	CCTC	9 cut(s)	34, 197, 239, 250, 332, 334, 636, 673, 784
MroXI	GAANNNNTTC	1 cut(s)	228
MseI	TTAA	2 cut(s)	368, 464
MspA1I	CMGCKG	1 cut(s)	591
MspCI	CTTAAG	1 cut(s)	463
MspI	CCGG	6 cut(s)	41, 119, 364, 566, 635, 704
MspR9I	CCNGG	5 cut(s)	41, 42, 119, 364, 567
Mva1269I	GAATGC	1 cut(s)	493
MwoI	GCNNNNNNNGC	1 cut(s)	591
NciI	CCSGG	5 cut(s)	41, 42, 119, 364, 567
NcoI	CCATGG	1 cut(s)	5
NdeII	GATC	6 cut(s)	194, 236, 397, 538, 682, 736
NlaIII	CATG	1 cut(s)	9
NlaIV	GGNNCC	5 cut(s)	54, 211, 357, 564, 753
PctI	GAATGC	1 cut(s)	493
PdmI	GAANNNNTTC	1 cut(s)	228
PfeI	GAWTC	2 cut(s)	296, 317
PinAI	ACCGGT	2 cut(s)	634, 703
PkrI	GCNGC	3 cut(s)	587, 590, 593
PsiI	TTATAA	1 cut(s)	435
PspN4I	GGNNCC	5 cut(s)	54, 211, 357, 564, 753
PspPI	GGNCC	5 cut(s)	52, 176, 248, 388, 506
PstI	CTGCAG	1 cut(s)	514
PsuI	RGATCY	3 cut(s)	194, 236, 397
RsaI	GTAC	2 cut(s)	114, 384
RsaNI	GTAC	2 cut(s)	113, 383
SalI	GTCGAC	1 cut(s)	654
SaqAI	TTAA	2 cut(s)	368, 464
SatI	GCNGC	3 cut(s)	586, 589, 592
Sau3AI	GATC	6 cut(s)	194, 236, 397, 538, 682, 736
Sau96I	GGNCC	5 cut(s)	52, 176, 248, 388, 506
ScrFI	CCNGG	5 cut(s)	41, 42, 119, 364, 567
SetI	ASST	9 cut(s)	250, 269, 390, 422, 461, 546, 561, 628, 655
SfcI	CTRYAG	2 cut(s)	180, 510
SgrDI	CGTCGACG	1 cut(s)	654
SinI	GGWCC	4 cut(s)	52, 248, 388, 506
SmaI	CCCGGG	1 cut(s)	42
SmlI	CTYRAG	4 cut(s)	262, 338, 452, 463
SmoI	CTYRAG	4 cut(s)	262, 338, 452, 463
Sse9I	AATT	5 cut(s)	224, 375, 551, 731, 788
SsiI	CCGC	7 cut(s)	154, 160, 207, 310, 583, 586, 589
StyD4I	CCNGG	5 cut(s)	39, 40, 117, 362, 565
StyI	CCWWGG	2 cut(s)	5, 755
TaiI	ACGT	1 cut(s)	655
TaqI	TCGA	2 cut(s)	655, 764
TasI	AATT	5 cut(s)	224, 375, 551, 731, 788
TatI	WGTACW	1 cut(s)	382
TauI	GCSGC	2 cut(s)	588, 591
TfiI	GAWTC	2 cut(s)	296, 317
Tru1I	TTAA	2 cut(s)	368, 464
Tru9I	TTAA	2 cut(s)	368, 464
TseI	GCWGC	1 cut(s)	591
TspDTI	ATGAA	2 cut(s)	65, 246
TspMI	CCCGGG	1 cut(s)	40
Vha464I	CTTAAG	1 cut(s)	463
VpaK11BI	GGWCC	4 cut(s)	52, 248, 388, 506
XapI	RAATTY	2 cut(s)	375, 731
XmaI	CCCGGG	1 cut(s)	40
XmiI	GTMKAC	1 cut(s)	655
XmnI	GAANNNNTTC	1 cut(s)	228
ZraI	GACGTC	1 cut(s)	653

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.