Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr3

Orthogroup ID

OG0003929

Physical Location & Seq

Genomic Coordinates Forward (+)

6408629 .. 6412392

Gene Structure 3764 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom03g08010.6

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1074 bp

ATGGCGCAAGCTTCTTCCTCGCCTCGAAGCTCTGCGTATCTCGACGCGCTGACGCAAGAGATCGAGAAGAAGCTCCAGCGGGCGCTGGCTTCTCCGTCGCAGCGGCGGAATTTGTTGCAGGAGTTGTTTGCTGACATTGCTTTGGAGATCGATGAGCGAGCCAAAGAAATGATTCTCAGCAGGGAAGAGGATGCAATTTCTCCTGCTGAAGATGGCATTGAAGGACAGCTATGCTTTTACGATGTGCTCACTGATCATTATGTTTGGGTGCCTGAGAGTGGAAAACGCATCCTTGATTTGATTGTCCAACTATGGAGCCAGTCATTTGCATCTCATATTTTTGCCTTGTTGTTCCACAAATGGCTGTTTGAAGTCCAACTTGACAACCCTGAAGTACTTCTTCGTTACTCATCTGCTCTTGTTGAAGGTGCAACAAATGTTTTCTGGATTGATACGCAATCAAATGCAAGGCGATTTCAATCCCTCTTTCATTATCTGCTTGAGGATGTTGCTTTGGAGCCCAAACGGTTAAATAAAATTCCTGTACAGGTCCAGCGAGATCTATTTCTTTTACTCTCGAGGTTTATATTTTTTTATAACTCAGTTGACAAGCTCGACAGCTTCTTAAGGGCATTTCCTCTTTTTCCCAACGCTTTTCTGGTTGGTAGTTCAGCAGACTTCTTTGTTATTGAACTTGCAGATCAGCTTCAAAAACTGAAGGTGGAACCAGTATTGCTGCATTACCTTTTGCACATAAAACTTCTCCAGGGAATGGAGCTGAGAATGGCCACAAGTACGAGGTTAAAGGCGTGTTTGTATAGCTTCACTTCTCCTGGAGGTCCAATGTACCCCACAAGAGCTGTTCGTCATGCGGCATGGGATGCATTAGATTTGCTTTTTCCCGTTGGCAGATATCCTCGGCATCTTATAAGCCTGTTCTTCCGATTGCTATATCCATGGTACTGGCCCGTTTCTTGTTGGAATTTCGTAATGGATTGCGTGAAGGCAGTATTGTACTCTCTGTTGGGATTAATCTTTTCATGTTTGGAGAAGCTGAGAAGGCCAAAGTTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

358

Amino Acids

41.41

Weight (kDa)

6.72

Isoelectric Point (pI)

66.53

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003929)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G59960 AT5G59960 AT5G59960
fragaria_vesca	FvH4_3g35470 FvH4_3g35470
malus_domestica	MD03G1097100.v1.1 MD11G1143700.v1.1
prunus_persica	Prupe.4G098100_v2.0.a1 Prupe.6G081500_v2.0.a1 Prupe.6G081500_v2.0.a1 Prupe.6G081500_v2.0.a1
pyrus_communis	pycom03g08010 pycom11g09330
rosa_chinensis	RchiOBHm_Chr1g0369801 RchiOBHm_Chr5g0063631
rosa_laevigata	RLG00000029314 RLG00000035658
rosa_multiflora	Rmu_sc0000368.1_g000040 Rmu_ssc0000309.1_g000060
rosa_roxburghii	Rroxscaffold_1G00017170 Rroxscaffold_2G00129250
rosa_rugosa	Rorug05G0358400 Rorug05G0358500 Rorug05G0358500 Rorug05G0358600
rosa_samantha	Rh2CG479400 Rh3DG316400 Rh5AG417200 Rh5BG432800 Rh5CG456000 Rh5DG446200 Rh6CG100700
rosa_wichuraiana	Rw3G025090 Rw5G039210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	597, 929
AccB1I	GGYRCC	1 cut(s)	268
AccB7I	CCANNNNNTGG	1 cut(s)	772
AccII	CGCG	1 cut(s)	47
AciI	CCGC	4 cut(s)	79, 103, 106, 872
AcoI	YGGCCR	1 cut(s)	786
AcsI	RAATTY	3 cut(s)	109, 537, 982
AcuI	CTGAAG	3 cut(s)	228, 411, 737
AfaI	GTAC	6 cut(s)	396, 546, 796, 848, 962, 1016
AfiI	CCNNNNNNNGG	2 cut(s)	278, 772
AflII	CTTAAG	1 cut(s)	625
AgsI	TTSAA	6 cut(s)	221, 371, 425, 479, 692, 710
AjnI	CCWGG	2 cut(s)	765, 832
Alw21I	GWGCWC	1 cut(s)	249
Ama87I	CYCGRG	1 cut(s)	577
AoxI	GGCC	3 cut(s)	786, 965, 1061
ApeKI	GCWGC	2 cut(s)	100, 736
ApoI	RAATTY	3 cut(s)	109, 537, 982
AseI	ATTAAT	1 cut(s)	1031
Asp700I	GAANNNNTTC	2 cut(s)	171, 396
AspLEI	GCGC	3 cut(s)	7, 49, 85
AspS9I	GGNCC	3 cut(s)	550, 839, 966
AvaI	CYCGRG	1 cut(s)	577
AvaII	GGWCC	2 cut(s)	550, 839
BalI	TGGCCA	1 cut(s)	788
BanI	GGYRCC	1 cut(s)	268
BanII	GRGCYC	1 cut(s)	522
Bbv12I	GWGCWC	1 cut(s)	249
BbvI	GCAGC	2 cut(s)	112, 723
BccI	CCATC	1 cut(s)	206
BciT130I	CCWGG	2 cut(s)	767, 834
BclI	TGATCA	1 cut(s)	253
BfoI	RGCGCY	1 cut(s)	86
BfrI	CTTAAG	1 cut(s)	625
BglII	AGATCT	1 cut(s)	559
BisI	GCNGC	4 cut(s)	101, 104, 737, 873
BlsI	GCNGC	4 cut(s)	102, 105, 738, 874
BmcAI	AGTACT	1 cut(s)	396
Bme1390I	CCNGG	2 cut(s)	767, 834
Bme18I	GGWCC	2 cut(s)	550, 839
BmeT110I	CYCGRG	1 cut(s)	577
BmgT120I	GGNCC	3 cut(s)	550, 839, 966
BmiI	GGNNCC	4 cut(s)	270, 317, 519, 726
BmrFI	CCNGG	2 cut(s)	767, 834
BmsI	GCATC	5 cut(s)	181, 297, 338, 871, 931
BpmI	CTGGAG	3 cut(s)	59, 749, 855
BpuEI	CTTGAG	1 cut(s)	521
Bsa29I	ATCGAT	1 cut(s)	150
BsaBI	GATNNNNATC	1 cut(s)	478
BsaJI	CCNNGG	3 cut(s)	766, 917, 956
Bsc4I	CCNNNNNNNGG	2 cut(s)	278, 772
Bse1I	ACTGG	3 cut(s)	319, 728, 968
Bse3DI	GCAATG	1 cut(s)	135
Bse8I	GATNNNNATC	1 cut(s)	478
BseBI	CCWGG	2 cut(s)	767, 834
BseCI	ATCGAT	1 cut(s)	150
BseDI	CCNNGG	3 cut(s)	766, 917, 956
BseGI	GGATG	4 cut(s)	196, 288, 511, 886
BseJI	GATNNNNATC	1 cut(s)	478
BseLI	CCNNNNNNNGG	2 cut(s)	278, 772
BseMI	GCAATG	1 cut(s)	135
BseMII	CTCAG	5 cut(s)	190, 264, 615, 770, 1046
BseNI	ACTGG	3 cut(s)	319, 728, 968
BseXI	GCAGC	2 cut(s)	112, 723
Bsh1236I	CGCG	1 cut(s)	47
BshFI	GGCC	3 cut(s)	788, 967, 1063
BshNI	GGYRCC	1 cut(s)	268
BshVI	ATCGAT	1 cut(s)	150
BsiHKAI	GWGCWC	1 cut(s)	249
BsiHKCI	CYCGRG	1 cut(s)	577
BslI	CCNNNNNNNGG	2 cut(s)	278, 772
BsnI	GGCC	3 cut(s)	788, 967, 1063
BsoBI	CYCGRG	1 cut(s)	577
Bsp1286I	GDGCHC	2 cut(s)	249, 522
Bsp1407I	TGTACA	1 cut(s)	544
Bsp143I	GATC	5 cut(s)	60, 147, 253, 559, 700
Bsp19I	CCATGG	1 cut(s)	956
BspACI	CCGC	4 cut(s)	79, 103, 106, 872
BspANI	GGCC	3 cut(s)	788, 967, 1063
BspCNI	CTCAG	5 cut(s)	189, 265, 614, 771, 1047
BspDI	ATCGAT	1 cut(s)	150
BspFNI	CGCG	1 cut(s)	47
BspLI	GGNNCC	4 cut(s)	270, 317, 519, 726
BspT107I	GGYRCC	1 cut(s)	268
BspTI	CTTAAG	1 cut(s)	625
BsrDI	GCAATG	1 cut(s)	135
BsrGI	TGTACA	1 cut(s)	544
BsrI	ACTGG	3 cut(s)	319, 728, 968
BssECI	CCNNGG	3 cut(s)	766, 917, 956
BssMI	GATC	5 cut(s)	60, 147, 253, 559, 700
BssT1I	CCWWGG	1 cut(s)	956
Bst2UI	CCWGG	2 cut(s)	767, 834
Bst4CI	ACNGT	1 cut(s)	528
Bst6I	CTCTTC	1 cut(s)	180
BstAFI	CTTAAG	1 cut(s)	625
BstAPI	GCANNNNNTGC	1 cut(s)	881
BstAUI	TGTACA	1 cut(s)	544
BstC8I	GCNNGC	4 cut(s)	9, 81, 87, 159
BstDEI	CTNAG	5 cut(s)	176, 273, 601, 779, 1055
BstDSI	CCRYGG	1 cut(s)	956
BstF5I	GGATG	4 cut(s)	196, 288, 511, 886
BstFNI	CGCG	1 cut(s)	47
BstH2I	RGCGCY	1 cut(s)	86
BstHHI	GCGC	3 cut(s)	7, 49, 85
BstKTI	GATC	5 cut(s)	63, 150, 256, 562, 703
BstMBI	GATC	5 cut(s)	60, 147, 253, 559, 700
BstMWI	GCNNNNNNNGC	3 cut(s)	137, 881, 1060
BstNI	CCWGG	2 cut(s)	767, 834
BstSCI	CCNGG	2 cut(s)	765, 832
BstUI	CGCG	1 cut(s)	47
BstV1I	GCAGC	2 cut(s)	112, 723
BstX2I	RGATCY	1 cut(s)	559
BstXI	CCANNNNNNTGG	1 cut(s)	963
BstYI	RGATCY	1 cut(s)	559
Bsu15I	ATCGAT	1 cut(s)	150
BsuRI	GGCC	3 cut(s)	788, 967, 1063
BsuTUI	ATCGAT	1 cut(s)	150
BtgI	CCRYGG	1 cut(s)	956
BtsCI	GGATG	4 cut(s)	196, 288, 511, 886
BtsIMutI	CAGTG	1 cut(s)	249
Cac8I	GCNNGC	4 cut(s)	9, 81, 87, 159
CfoI	GCGC	3 cut(s)	7, 49, 85
Cfr13I	GGNCC	3 cut(s)	550, 839, 966
ClaI	ATCGAT	1 cut(s)	150
CseI	GACGC	2 cut(s)	53, 61
Csp6I	GTAC	6 cut(s)	395, 545, 795, 847, 961, 1015
CviAII	CATG	4 cut(s)	869, 876, 957, 1041
CviQI	GTAC	6 cut(s)	395, 545, 795, 847, 961, 1015
DdeI	CTNAG	5 cut(s)	176, 273, 601, 779, 1055
DpnI	GATC	5 cut(s)	62, 149, 255, 561, 702
DpnII	GATC	5 cut(s)	60, 147, 253, 559, 700
EaeI	YGGCCR	1 cut(s)	786
Eam1104I	CTCTTC	1 cut(s)	180
EarI	CTCTTC	1 cut(s)	180
EciI	GGCGGA	1 cut(s)	121
Eco130I	CCWWGG	1 cut(s)	956
Eco24I	GRGCYC	1 cut(s)	522
Eco32I	GATATC	1 cut(s)	914
Eco47I	GGWCC	2 cut(s)	550, 839
Eco57I	CTGAAG	3 cut(s)	228, 411, 737
Eco88I	CYCGRG	1 cut(s)	577
EcoRII	CCWGG	2 cut(s)	765, 832
EcoRV	GATATC	1 cut(s)	914
EcoT14I	CCWWGG	1 cut(s)	956
EcoT22I	ATGCAT	1 cut(s)	886
EcoT38I	GRGCYC	1 cut(s)	522
ErhI	CCWWGG	1 cut(s)	956
FaeI	CATG	4 cut(s)	872, 879, 960, 1044
FalI	AAGNNNNNCTT	4 cut(s)	363, 395, 384, 416
FatI	CATG	4 cut(s)	868, 875, 956, 1040
FauI	CCCGC	1 cut(s)	72
FbaI	TGATCA	1 cut(s)	253
Fnu4HI	GCNGC	4 cut(s)	101, 104, 737, 873
FokI	GGATG	4 cut(s)	203, 275, 518, 893
FriOI	GRGCYC	1 cut(s)	522
Fsp4HI	GCNGC	4 cut(s)	101, 104, 737, 873
GlaI	GCGC	3 cut(s)	6, 48, 84
GluI	GCNGC	4 cut(s)	101, 104, 737, 873
GsuI	CTGGAG	3 cut(s)	59, 749, 855
HaeII	RGCGCY	1 cut(s)	86
HaeIII	GGCC	3 cut(s)	788, 967, 1063
HgaI	GACGC	2 cut(s)	53, 61
HhaI	GCGC	3 cut(s)	7, 49, 85
Hin1II	CATG	4 cut(s)	872, 879, 960, 1044
Hin6I	GCGC	3 cut(s)	5, 47, 83
HinP1I	GCGC	3 cut(s)	5, 47, 83
HincII	GTYRAC	1 cut(s)	607
HindII	GTYRAC	1 cut(s)	607
HindIII	AAGCTT	1 cut(s)	9
HinfI	GANTC	1 cut(s)	172
Hpy166II	GTNNAC	1 cut(s)	607
Hpy188I	TCNGA	1 cut(s)	944
Hpy188III	TCNNGA	4 cut(s)	41, 64, 445, 577
Hpy8I	GTNNAC	1 cut(s)	607
Hpy99I	CGWCG	2 cut(s)	47, 100
HpyAV	CCTTC	5 cut(s)	215, 419, 712, 997, 1053
HpyCH4III	ACNGT	1 cut(s)	528
HpyCH4V	TGCA	9 cut(s)	118, 194, 329, 431, 467, 698, 739, 751, 884
HpyF10VI	GCNNNNNNNGC	3 cut(s)	137, 881, 1060
HpyF3I	CTNAG	5 cut(s)	176, 273, 601, 779, 1055
Hsp92II	CATG	4 cut(s)	872, 879, 960, 1044
HspAI	GCGC	3 cut(s)	5, 47, 83
Ksp22I	TGATCA	1 cut(s)	253
Kzo9I	GATC	5 cut(s)	60, 147, 253, 559, 700
LmnI	GCTCC	4 cut(s)	78, 315, 517, 775
Lsp1109I	GCAGC	2 cut(s)	112, 723
LweI	GCATC	5 cut(s)	181, 297, 338, 871, 931
MaeIII	GTNAC	1 cut(s)	404
MalI	GATC	5 cut(s)	62, 149, 255, 561, 702
MboI	GATC	5 cut(s)	60, 147, 253, 559, 700
MboII	GAAGA	6 cut(s)	6, 79, 197, 221, 392, 931
MflI	RGATCY	1 cut(s)	559
MhlI	GDGCHC	2 cut(s)	249, 522
MlsI	TGGCCA	1 cut(s)	788
MluCI	AATT	4 cut(s)	109, 195, 537, 982
MluNI	TGGCCA	1 cut(s)	788
MmeI	TCCRAC	3 cut(s)	331, 400, 959
Mox20I	TGGCCA	1 cut(s)	788
Mph1103I	ATGCAT	1 cut(s)	886
MroXI	GAANNNNTTC	2 cut(s)	171, 396
MscI	TGGCCA	1 cut(s)	788
MseI	TTAA	4 cut(s)	530, 626, 803, 1031
Msp20I	TGGCCA	1 cut(s)	788
MspA1I	CMGCKG	2 cut(s)	79, 103
MspCI	CTTAAG	1 cut(s)	625
MspR9I	CCNGG	2 cut(s)	767, 834
MvaI	CCWGG	2 cut(s)	767, 834
MvnI	CGCG	1 cut(s)	47
MwoI	GCNNNNNNNGC	3 cut(s)	137, 881, 1060
NcoI	CCATGG	1 cut(s)	956
NdeII	GATC	5 cut(s)	60, 147, 253, 559, 700
NlaIII	CATG	4 cut(s)	872, 879, 960, 1044
NlaIV	GGNNCC	4 cut(s)	270, 317, 519, 726
NmeAIII	GCCGAG	1 cut(s)	898
NsiI	ATGCAT	1 cut(s)	886
PaeR7I	CTCGAG	1 cut(s)	577
PdmI	GAANNNNTTC	2 cut(s)	171, 396
PfeI	GAWTC	1 cut(s)	172
PflMI	CCANNNNNTGG	1 cut(s)	772
PfoI	TCCNGGA	1 cut(s)	832
PkrI	GCNGC	4 cut(s)	102, 105, 738, 874
PshBI	ATTAAT	1 cut(s)	1031
PsiI	TTATAA	2 cut(s)	597, 929
Psp6I	CCWGG	2 cut(s)	765, 832
PspGI	CCWGG	2 cut(s)	765, 832
PspN4I	GGNNCC	4 cut(s)	270, 317, 519, 726
PspPI	GGNCC	3 cut(s)	550, 839, 966
PsuI	RGATCY	1 cut(s)	559
RsaI	GTAC	6 cut(s)	396, 546, 796, 848, 962, 1016
RsaNI	GTAC	6 cut(s)	395, 545, 795, 847, 961, 1015
SaqAI	TTAA	4 cut(s)	530, 626, 803, 1031
SatI	GCNGC	4 cut(s)	101, 104, 737, 873
Sau3AI	GATC	5 cut(s)	60, 147, 253, 559, 700
Sau96I	GGNCC	3 cut(s)	550, 839, 966
ScaI	AGTACT	1 cut(s)	396
ScrFI	CCNGG	2 cut(s)	767, 834
SduI	GDGCHC	2 cut(s)	249, 522
SfaNI	GCATC	5 cut(s)	181, 297, 338, 871, 931
Sfr274I	CTCGAG	1 cut(s)	577
SinI	GGWCC	2 cut(s)	550, 839
SlaI	CTCGAG	1 cut(s)	577
SmlI	CTYRAG	3 cut(s)	500, 577, 625
SmoI	CTYRAG	3 cut(s)	500, 577, 625
Sse9I	AATT	4 cut(s)	109, 195, 537, 982
SsiI	CCGC	4 cut(s)	79, 103, 106, 872
StyD4I	CCNGG	2 cut(s)	765, 832
StyI	CCWWGG	1 cut(s)	956
TaaI	ACNGT	1 cut(s)	528
TaqI	TCGA	6 cut(s)	25, 42, 63, 150, 578, 615
TasI	AATT	4 cut(s)	109, 195, 537, 982
TatI	WGTACW	3 cut(s)	394, 544, 1014
TauI	GCSGC	2 cut(s)	106, 875
TfiI	GAWTC	1 cut(s)	172
Tru1I	TTAA	4 cut(s)	530, 626, 803, 1031
Tru9I	TTAA	4 cut(s)	530, 626, 803, 1031
TscAI	CASTG	1 cut(s)	256
TseI	GCWGC	2 cut(s)	100, 736
TspDTI	ATGAA	2 cut(s)	479, 1029
TspGWI	ACGGA	1 cut(s)	84
TspRI	CASTG	1 cut(s)	256
Van91I	CCANNNNNTGG	1 cut(s)	772
Vha464I	CTTAAG	1 cut(s)	625
VpaK11BI	GGWCC	2 cut(s)	550, 839
VspI	ATTAAT	1 cut(s)	1031
XapI	RAATTY	3 cut(s)	109, 537, 982
XcmI	CCANNNNNNNNNTGG	1 cut(s)	655
XhoI	CTCGAG	1 cut(s)	577
XmnI	GAANNNNTTC	2 cut(s)	171, 396
ZrmI	AGTACT	1 cut(s)	396
Zsp2I	ATGCAT	1 cut(s)	886

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.