Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3D

Orthogroup ID

OG0003929

Physical Location & Seq

Genomic Coordinates Forward (+)

34015694 .. 34021398

Gene Structure 5705 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3DG316400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 717 bp

ATGGGCTGGGCCGGAATCCATGGCGGCGGCGATCAGGCGGACCAGATTAGAGAGGGAGAGGGACTTGGCGGCGAGCTCGTCGAAGAAGCAGTCCATGGGGTCGGTAAGGCCAAGAGGCGGTGCCGATTTTCGGGAATTACTTCGGAGATCCTCAGGAGGATTGACATTCAGTCAAATACAAGGCGGTTTGAATCCCTCTTTCTTTATCTTCTTGAGGATGTTGCTTTGGAACCCACCCGGTTAAATAAAATTCCTATACAGGTCCAGCGAGATCTGTATCTTTTACTTTCAAGGTTTATATTCTTTTATAACTCAGTTGACAAACTTGAGAGCTTCTTAAGGCACTTTCCCGTATTCCCGAATGCTTTTCTGGTTGGTGGTCCTGCAGACTTCTTTGTTATTGAACTTGCAGATCAGCTTCAAAAATTGAAGGTGGAACCGGTATTGCTCCATTACTTTTCACACATTAAAGTTCTCCAGGGCATGGAGCTGAGAATGGCCACAAGTACAAGGATTAACAGACTCTGCGAGTTGTCTTTCTTTAATAAGGTTAGAGTATCTGATATCCCAGATTATCTCCTATTTCTTGGCTGTGATTGTAGGCATCTTGGAGATGACATAGGTAAGAATGTTGTAGGTGAATATAATGAGTGTTTTCTAGTAGTTATATATGGATACGATACTACAAGTTGTATGTCGCCAGACACATTCGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

238

Amino Acids

27.14

Weight (kDa)

5.71

Isoelectric Point (pI)

48.87

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003929)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G59960 AT5G59960 AT5G59960
fragaria_vesca	FvH4_3g35470 FvH4_3g35470
malus_domestica	MD03G1097100.v1.1 MD11G1143700.v1.1
prunus_persica	Prupe.4G098100_v2.0.a1 Prupe.6G081500_v2.0.a1 Prupe.6G081500_v2.0.a1 Prupe.6G081500_v2.0.a1
pyrus_communis	pycom03g08010 pycom11g09330
rosa_chinensis	RchiOBHm_Chr1g0369801 RchiOBHm_Chr5g0063631
rosa_laevigata	RLG00000029314 RLG00000035658
rosa_multiflora	Rmu_sc0000368.1_g000040 Rmu_ssc0000309.1_g000060
rosa_roxburghii	Rroxscaffold_1G00017170 Rroxscaffold_2G00129250
rosa_rugosa	Rorug05G0358400 Rorug05G0358500 Rorug05G0358500 Rorug05G0358600
rosa_samantha	Rh2CG479400 Rh3DG316400 Rh5AG417200 Rh5BG432800 Rh5CG456000 Rh5DG446200 Rh6CG100700
rosa_wichuraiana	Rw3G025090 Rw5G039210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	309
AccB1I	GGYRCC	1 cut(s)	120
AccB7I	CCANNNNNTGG	1 cut(s)	484
AciI	CCGC	6 cut(s)	24, 27, 38, 69, 118, 184
AclWI	GGATC	1 cut(s)	142
AcoI	YGGCCR	1 cut(s)	498
AcsI	RAATTY	1 cut(s)	249
AfaI	GTAC	1 cut(s)	508
AfiI	CCNNNNNNNGG	3 cut(s)	117, 130, 484
AflII	CTTAAG	1 cut(s)	337
AgeI	ACCGGT	1 cut(s)	439
AgsI	TTSAA	5 cut(s)	191, 291, 404, 422, 430
AhdI	GACNNNNNGTC	1 cut(s)	169
AjnI	CCWGG	1 cut(s)	477
AluBI	AGCT	4 cut(s)	76, 333, 418, 490
AluI	AGCT	4 cut(s)	76, 333, 418, 490
Alw21I	GWGCWC	1 cut(s)	78
AlwI	GGATC	1 cut(s)	142
AlwNI	CAGNNNCTG	1 cut(s)	525
AoxI	GGCC	3 cut(s)	9, 108, 498
ApoI	RAATTY	1 cut(s)	249
ArsI	GACNNNNNNTTYG	2 cut(s)	75, 107
AsiGI	ACCGGT	1 cut(s)	439
Asp700I	GAANNNNTTC	1 cut(s)	139
AspS9I	GGNCC	4 cut(s)	9, 40, 262, 380
AsuC2I	CCSGG	1 cut(s)	238
AsuHPI	GGTGA	1 cut(s)	650
AvaII	GGWCC	3 cut(s)	40, 262, 380
AxyI	CCTNAGG	1 cut(s)	152
BalI	TGGCCA	1 cut(s)	500
BanI	GGYRCC	1 cut(s)	120
BanII	GRGCYC	1 cut(s)	78
Bbv12I	GWGCWC	1 cut(s)	78
BciT130I	CCWGG	1 cut(s)	479
BciVI	GTATCC	1 cut(s)	668
BcnI	CCSGG	1 cut(s)	238
BfaI	CTAG	1 cut(s)	659
BfmI	CTRYAG	1 cut(s)	384
BfrI	CTTAAG	1 cut(s)	337
BfuI	GTATCC	1 cut(s)	668
BglII	AGATCT	1 cut(s)	271
BisI	GCNGC	3 cut(s)	25, 28, 70
BlsI	GCNGC	3 cut(s)	26, 29, 71
Bme1390I	CCNGG	2 cut(s)	238, 479
Bme18I	GGWCC	3 cut(s)	40, 262, 380
BmeRI	GACNNNNNGTC	1 cut(s)	169
BmgT120I	GGNCC	4 cut(s)	9, 40, 262, 380
BmiI	GGNNCC	3 cut(s)	122, 231, 438
BmrFI	CCNGG	2 cut(s)	238, 479
BmsI	GCATC	1 cut(s)	613
BpmI	CTGGAG	1 cut(s)	461
BpuEI	CTTGAG	2 cut(s)	233, 347
BpuMI	CCSGG	1 cut(s)	238
BsaBI	GATNNNNATC	1 cut(s)	276
BsaJI	CCNNGG	3 cut(s)	19, 94, 478
BsaWI	WCCGGW	1 cut(s)	439
Bsc4I	CCNNNNNNNGG	3 cut(s)	117, 130, 484
Bse118I	RCCGGY	1 cut(s)	439
Bse21I	CCTNAGG	1 cut(s)	152
Bse8I	GATNNNNATC	1 cut(s)	276
BseBI	CCWGG	1 cut(s)	479
BseDI	CCNNGG	3 cut(s)	19, 94, 478
BseGI	GGATG	1 cut(s)	223
BseJI	GATNNNNATC	1 cut(s)	276
BseLI	CCNNNNNNNGG	3 cut(s)	117, 130, 484
BseMII	CTCAG	3 cut(s)	166, 327, 482
BseYI	CCCAGC	1 cut(s)	6
BshFI	GGCC	3 cut(s)	11, 110, 500
BshNI	GGYRCC	1 cut(s)	120
BshTI	ACCGGT	1 cut(s)	439
BsiHKAI	GWGCWC	1 cut(s)	78
BsiSI	CCGG	3 cut(s)	12, 238, 440
BslFI	GGGAC	1 cut(s)	75
BslI	CCNNNNNNNGG	3 cut(s)	117, 130, 484
BsmFI	GGGAC	1 cut(s)	75
BsmI	GAATGC	1 cut(s)	367
BsnI	GGCC	3 cut(s)	11, 110, 500
Bsp1286I	GDGCHC	1 cut(s)	78
Bsp143I	GATC	4 cut(s)	31, 147, 271, 412
Bsp19I	CCATGG	2 cut(s)	19, 94
BspACI	CCGC	6 cut(s)	24, 27, 38, 69, 118, 184
BspANI	GGCC	3 cut(s)	11, 110, 500
BspCNI	CTCAG	3 cut(s)	165, 326, 483
BspLI	GGNNCC	3 cut(s)	122, 231, 438
BspMAI	CTGCAG	1 cut(s)	388
BspPI	GGATC	1 cut(s)	142
BspT107I	GGYRCC	1 cut(s)	120
BspTI	CTTAAG	1 cut(s)	337
BsrFI	RCCGGY	1 cut(s)	439
BssAI	RCCGGY	1 cut(s)	439
BssECI	CCNNGG	3 cut(s)	19, 94, 478
BssMI	GATC	4 cut(s)	31, 147, 271, 412
BssT1I	CCWWGG	2 cut(s)	19, 94
Bst2UI	CCWGG	1 cut(s)	479
BstAFI	CTTAAG	1 cut(s)	337
BstC8I	GCNNGC	1 cut(s)	74
BstDEI	CTNAG	3 cut(s)	152, 313, 491
BstDSI	CCRYGG	2 cut(s)	19, 94
BstF5I	GGATG	1 cut(s)	223
BstKTI	GATC	4 cut(s)	34, 150, 274, 415
BstMBI	GATC	4 cut(s)	31, 147, 271, 412
BstNI	CCWGG	1 cut(s)	479
BstSCI	CCNGG	2 cut(s)	236, 477
BstSFI	CTRYAG	1 cut(s)	384
BstX2I	RGATCY	2 cut(s)	147, 271
BstYI	RGATCY	2 cut(s)	147, 271
Bsu36I	CCTNAGG	1 cut(s)	152
BsuI	GTATCC	1 cut(s)	668
BsuRI	GGCC	3 cut(s)	11, 110, 500
BtgI	CCRYGG	2 cut(s)	19, 94
BtsCI	GGATG	1 cut(s)	223
Cac8I	GCNNGC	1 cut(s)	74
CaiI	CAGNNNCTG	1 cut(s)	525
Cfr10I	RCCGGY	1 cut(s)	439
Cfr13I	GGNCC	4 cut(s)	9, 40, 262, 380
Csp6I	GTAC	1 cut(s)	507
CspAI	ACCGGT	1 cut(s)	439
CviAII	CATG	3 cut(s)	20, 95, 484
CviJI	RGCY	9 cut(s)	6, 11, 76, 110, 333, 418, 490, 500, 591
CviKI_1	RGCY	9 cut(s)	6, 11, 76, 110, 333, 418, 490, 500, 591
CviQI	GTAC	1 cut(s)	507
DdeI	CTNAG	3 cut(s)	152, 313, 491
DpnI	GATC	4 cut(s)	33, 149, 273, 414
DpnII	GATC	4 cut(s)	31, 147, 271, 412
DriI	GACNNNNNGTC	1 cut(s)	169
EaeI	YGGCCR	1 cut(s)	498
Eam1105I	GACNNNNNGTC	1 cut(s)	169
EciI	GGCGGA	1 cut(s)	53
Ecl136II	GAGCTC	1 cut(s)	76
Eco130I	CCWWGG	2 cut(s)	19, 94
Eco24I	GRGCYC	1 cut(s)	78
Eco32I	GATATC	1 cut(s)	565
Eco47I	GGWCC	3 cut(s)	40, 262, 380
Eco53kI	GAGCTC	1 cut(s)	76
Eco81I	CCTNAGG	1 cut(s)	152
EcoICRI	GAGCTC	1 cut(s)	76
EcoRII	CCWGG	1 cut(s)	477
EcoRV	GATATC	1 cut(s)	565
EcoT14I	CCWWGG	2 cut(s)	19, 94
EcoT38I	GRGCYC	1 cut(s)	78
ErhI	CCWWGG	2 cut(s)	19, 94
FaeI	CATG	3 cut(s)	23, 98, 487
FaqI	GGGAC	1 cut(s)	75
FatI	CATG	3 cut(s)	19, 94, 483
Fnu4HI	GCNGC	3 cut(s)	25, 28, 70
FokI	GGATG	1 cut(s)	230
FriOI	GRGCYC	1 cut(s)	78
Fsp4HI	GCNGC	3 cut(s)	25, 28, 70
FspBI	CTAG	1 cut(s)	659
GluI	GCNGC	3 cut(s)	25, 28, 70
GsaI	CCCAGC	1 cut(s)	10
GsuI	CTGGAG	1 cut(s)	461
HaeIII	GGCC	3 cut(s)	11, 110, 500
HapII	CCGG	3 cut(s)	12, 238, 440
Hin1II	CATG	3 cut(s)	23, 98, 487
HincII	GTYRAC	1 cut(s)	319
HindII	GTYRAC	1 cut(s)	319
HinfI	GANTC	3 cut(s)	15, 191, 522
HpaII	CCGG	3 cut(s)	12, 238, 440
HphI	GGTGA	1 cut(s)	650
Hpy166II	GTNNAC	1 cut(s)	319
Hpy188I	TCNGA	2 cut(s)	145, 562
Hpy188III	TCNNGA	4 cut(s)	132, 154, 212, 358
Hpy8I	GTNNAC	1 cut(s)	319
Hpy99I	CGWCG	1 cut(s)	83
HpyAV	CCTTC	1 cut(s)	424
HpyCH4V	TGCA	2 cut(s)	386, 410
HpyF3I	CTNAG	3 cut(s)	152, 313, 491
Hsp92II	CATG	3 cut(s)	23, 98, 487
Kzo9I	GATC	4 cut(s)	31, 147, 271, 412
LmnI	GCTCC	2 cut(s)	453, 487
LweI	GCATC	1 cut(s)	613
MaeI	CTAG	1 cut(s)	659
MalI	GATC	4 cut(s)	33, 149, 273, 414
MboI	GATC	4 cut(s)	31, 147, 271, 412
MboII	GAAGA	2 cut(s)	95, 200
MflI	RGATCY	2 cut(s)	147, 271
MhlI	GDGCHC	1 cut(s)	78
MlsI	TGGCCA	1 cut(s)	500
MluCI	AATT	3 cut(s)	135, 249, 425
MluNI	TGGCCA	1 cut(s)	500
MlyI	GAGTC	1 cut(s)	516
MnlI	CCTC	7 cut(s)	46, 52, 108, 150, 161, 206, 208
Mox20I	TGGCCA	1 cut(s)	500
MroXI	GAANNNNTTC	1 cut(s)	139
MscI	TGGCCA	1 cut(s)	500
MseI	TTAA	6 cut(s)	242, 338, 468, 516, 543, 715
Msp20I	TGGCCA	1 cut(s)	500
MspCI	CTTAAG	1 cut(s)	337
MspI	CCGG	3 cut(s)	12, 238, 440
MspR9I	CCNGG	2 cut(s)	238, 479
Mva1269I	GAATGC	1 cut(s)	367
MvaI	CCWGG	1 cut(s)	479
NciI	CCSGG	1 cut(s)	238
NcoI	CCATGG	2 cut(s)	19, 94
NdeII	GATC	4 cut(s)	31, 147, 271, 412
NlaIII	CATG	3 cut(s)	23, 98, 487
NlaIV	GGNNCC	3 cut(s)	122, 231, 438
PctI	GAATGC	1 cut(s)	367
PdmI	GAANNNNTTC	1 cut(s)	139
PfeI	GAWTC	2 cut(s)	15, 191
PflMI	CCANNNNNTGG	1 cut(s)	484
PinAI	ACCGGT	1 cut(s)	439
PkrI	GCNGC	3 cut(s)	26, 29, 71
PleI	GAGTC	1 cut(s)	516
PpsI	GAGTC	1 cut(s)	516
PsiI	TTATAA	1 cut(s)	309
Psp124BI	GAGCTC	1 cut(s)	78
Psp6I	CCWGG	1 cut(s)	477
PspFI	CCCAGC	1 cut(s)	6
PspGI	CCWGG	1 cut(s)	477
PspN4I	GGNNCC	3 cut(s)	122, 231, 438
PspPI	GGNCC	4 cut(s)	9, 40, 262, 380
PstI	CTGCAG	1 cut(s)	388
PstNI	CAGNNNCTG	1 cut(s)	525
PsuI	RGATCY	2 cut(s)	147, 271
RsaI	GTAC	1 cut(s)	508
RsaNI	GTAC	1 cut(s)	507
SacI	GAGCTC	1 cut(s)	78
SaqAI	TTAA	6 cut(s)	242, 338, 468, 516, 543, 715
SatI	GCNGC	3 cut(s)	25, 28, 70
Sau3AI	GATC	4 cut(s)	31, 147, 271, 412
Sau96I	GGNCC	4 cut(s)	9, 40, 262, 380
SchI	GAGTC	1 cut(s)	516
ScrFI	CCNGG	2 cut(s)	238, 479
SduI	GDGCHC	1 cut(s)	78
SfaNI	GCATC	1 cut(s)	613
SfcI	CTRYAG	1 cut(s)	384
SinI	GGWCC	3 cut(s)	40, 262, 380
SmlI	CTYRAG	3 cut(s)	212, 326, 337
SmoI	CTYRAG	3 cut(s)	212, 326, 337
Sse9I	AATT	3 cut(s)	135, 249, 425
SsiI	CCGC	6 cut(s)	24, 27, 38, 69, 118, 184
SspMI	CTAG	1 cut(s)	659
SstI	GAGCTC	1 cut(s)	78
StyD4I	CCNGG	2 cut(s)	236, 477
StyI	CCWWGG	2 cut(s)	19, 94
TaqI	TCGA	1 cut(s)	81
TasI	AATT	3 cut(s)	135, 249, 425
TatI	WGTACW	1 cut(s)	506
TauI	GCSGC	3 cut(s)	27, 30, 72
TfiI	GAWTC	2 cut(s)	15, 191
Tru1I	TTAA	6 cut(s)	242, 338, 468, 516, 543, 715
Tru9I	TTAA	6 cut(s)	242, 338, 468, 516, 543, 715
Van91I	CCANNNNNTGG	1 cut(s)	484
Vha464I	CTTAAG	1 cut(s)	337
VpaK11BI	GGWCC	3 cut(s)	40, 262, 380
XapI	RAATTY	1 cut(s)	249
XmnI	GAANNNNTTC	1 cut(s)	139
XspI	CTAG	1 cut(s)	659

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.