Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0003929

Physical Location & Seq

Genomic Coordinates Forward (+)

64433305 .. 64436445

Gene Structure 3141 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG479400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 726 bp

ATGAGGAAGGATTTTCGTCTCACGGCCAAGGTTGTCACCAACCAGCTTTTTGAAGTTCAACTTGACAACTCTGAAGTCCTTCTACGATTCTCATCTGCTCTTGTTCAAGGTGCTACAAACATTTTCTGGATTGACATTCAGTCAAATACAAGGCGGTTTGAATCCCTCTTTCTTTATCTTCTTGAGGATGTTGCTTTGGAACCCACCCGGTTTATATTCTTTTATAACTCAGTTGACAAACTTGAGAGCTTCTTAAGGCACTTTCCCTCTTTCCCGAATGCTTTTCTGGTTGGTGGTCCTGCAGACTTCTTTGTTATTGAACTTGCAGATCAGCTTCAAAAATTGAAGGTGGAACCGGTATTGCTCCATTACTTTTCACACATTAAAGTTCTCCAGGGCATGGAGCTGAGAATGGCCACAAGTACAAGGTTAAAGACTTGTTTGTATAACTTCACTTCTCCTGGTGGTCCAATGTACCCTACAAGAGTTGTTCGTCATGCTGCCTGGGATGCTTTAGATTTACTTTTTCCATTATCTCTTGATTTTAGATTGGCAATAAGCTCAAGAAGTTTGCGACTTGTAAATATGTTACATATTTGTCAGGAGCATGAACTATCAAAATGTGATTTCAAGCTGTTGAGTAGCTTGAAAGTTTTGTGGGTCGTAGAGTTACAGAGAGAAGTAGAGAAGCAAAGGAGCGCTAGATCAACAAGAAAATCAGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

241

Amino Acids

28.04

Weight (kDa)

8.99

Isoelectric Point (pI)

48.69

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003929)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G59960 AT5G59960 AT5G59960
fragaria_vesca	FvH4_3g35470 FvH4_3g35470
malus_domestica	MD03G1097100.v1.1 MD11G1143700.v1.1
prunus_persica	Prupe.4G098100_v2.0.a1 Prupe.6G081500_v2.0.a1 Prupe.6G081500_v2.0.a1 Prupe.6G081500_v2.0.a1
pyrus_communis	pycom03g08010 pycom11g09330
rosa_chinensis	RchiOBHm_Chr1g0369801 RchiOBHm_Chr5g0063631
rosa_laevigata	RLG00000029314 RLG00000035658
rosa_multiflora	Rmu_sc0000368.1_g000040 Rmu_ssc0000309.1_g000060
rosa_roxburghii	Rroxscaffold_1G00017170 Rroxscaffold_2G00129250
rosa_rugosa	Rorug05G0358400 Rorug05G0358500 Rorug05G0358500 Rorug05G0358600
rosa_samantha	Rh2CG479400 Rh3DG316400 Rh5AG417200 Rh5BG432800 Rh5CG456000 Rh5DG446200 Rh6CG100700
rosa_wichuraiana	Rw3G025090 Rw5G039210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	225
AccB7I	CCANNNNNTGG	1 cut(s)	400
AciI	CCGC	1 cut(s)	154
AcoI	YGGCCR	2 cut(s)	24, 414
AcuI	CTGAAG	1 cut(s)	93
AfaI	GTAC	2 cut(s)	424, 476
AfeI	AGCGCT	1 cut(s)	700
AfiI	CCNNNNNNNGG	1 cut(s)	400
AflII	CTTAAG	1 cut(s)	253
AgeI	ACCGGT	1 cut(s)	355
AgsI	TTSAA	9 cut(s)	53, 59, 107, 161, 320, 338, 346, 631, 649
AhdI	GACNNNNNGTC	1 cut(s)	139
AjnI	CCWGG	3 cut(s)	393, 460, 503
AluBI	AGCT	7 cut(s)	46, 249, 334, 406, 561, 634, 645
AluI	AGCT	7 cut(s)	46, 249, 334, 406, 561, 634, 645
Alw26I	GTCTC	1 cut(s)	23
Aor51HI	AGCGCT	1 cut(s)	700
AoxI	GGCC	2 cut(s)	24, 414
ApeKI	GCWGC	1 cut(s)	500
AsiGI	ACCGGT	1 cut(s)	355
Asp700I	GAANNNNTTC	1 cut(s)	78
AspLEI	GCGC	1 cut(s)	701
AspS9I	GGNCC	2 cut(s)	296, 467
AsuC2I	CCSGG	1 cut(s)	208
AsuHPI	GGTGA	1 cut(s)	28
AvaII	GGWCC	2 cut(s)	296, 467
BalI	TGGCCA	1 cut(s)	416
BarI	GAAGNNNNNNTAC	2 cut(s)	66, 98
BbvI	GCAGC	1 cut(s)	487
BceAI	ACGGC	1 cut(s)	39
BciT130I	CCWGG	3 cut(s)	395, 462, 505
BcnI	CCSGG	1 cut(s)	208
BcoDI	GTCTC	1 cut(s)	23
BfaI	CTAG	1 cut(s)	702
BfmI	CTRYAG	1 cut(s)	300
BfoI	RGCGCY	1 cut(s)	702
BfrI	CTTAAG	1 cut(s)	253
BisI	GCNGC	1 cut(s)	501
BlsI	GCNGC	1 cut(s)	502
Bme1390I	CCNGG	4 cut(s)	208, 395, 462, 505
Bme18I	GGWCC	2 cut(s)	296, 467
BmeRI	GACNNNNNGTC	1 cut(s)	139
BmgT120I	GGNCC	2 cut(s)	296, 467
BmiI	GGNNCC	2 cut(s)	201, 354
BmrFI	CCNGG	4 cut(s)	208, 395, 462, 505
BmsI	GCATC	1 cut(s)	499
BpmI	CTGGAG	1 cut(s)	377
BpuEI	CTTGAG	3 cut(s)	203, 263, 547
BpuMI	CCSGG	1 cut(s)	208
BsaBI	GATNNNNATC	1 cut(s)	91
BsaJI	CCNNGG	3 cut(s)	27, 394, 504
BsaWI	WCCGGW	1 cut(s)	355
Bsc4I	CCNNNNNNNGG	1 cut(s)	400
Bse118I	RCCGGY	1 cut(s)	355
Bse8I	GATNNNNATC	1 cut(s)	91
BseBI	CCWGG	3 cut(s)	395, 462, 505
BseDI	CCNNGG	3 cut(s)	27, 394, 504
BseGI	GGATG	2 cut(s)	193, 514
BseJI	GATNNNNATC	1 cut(s)	91
BseLI	CCNNNNNNNGG	1 cut(s)	400
BseMII	CTCAG	2 cut(s)	243, 398
BseXI	GCAGC	1 cut(s)	487
BshFI	GGCC	2 cut(s)	26, 416
BshTI	ACCGGT	1 cut(s)	355
BsiSI	CCGG	2 cut(s)	208, 356
BslI	CCNNNNNNNGG	1 cut(s)	400
BsmAI	GTCTC	1 cut(s)	23
BsmBI	CGTCTC	1 cut(s)	23
BsmI	GAATGC	1 cut(s)	283
BsnI	GGCC	2 cut(s)	26, 416
Bsp143I	GATC	2 cut(s)	328, 704
BspACI	CCGC	1 cut(s)	154
BspANI	GGCC	2 cut(s)	26, 416
BspCNI	CTCAG	2 cut(s)	242, 399
BspLI	GGNNCC	2 cut(s)	201, 354
BspMAI	CTGCAG	1 cut(s)	304
BspTI	CTTAAG	1 cut(s)	253
BsrFI	RCCGGY	1 cut(s)	355
BssAI	RCCGGY	1 cut(s)	355
BssECI	CCNNGG	3 cut(s)	27, 394, 504
BssMI	GATC	2 cut(s)	328, 704
BssT1I	CCWWGG	1 cut(s)	27
Bst2UI	CCWGG	3 cut(s)	395, 462, 505
BstAFI	CTTAAG	1 cut(s)	253
BstDEI	CTNAG	2 cut(s)	229, 407
BstF5I	GGATG	2 cut(s)	193, 514
BstH2I	RGCGCY	1 cut(s)	702
BstHHI	GCGC	1 cut(s)	701
BstKTI	GATC	2 cut(s)	331, 707
BstMAI	GTCTC	1 cut(s)	23
BstMBI	GATC	2 cut(s)	328, 704
BstMWI	GCNNNNNNNGC	1 cut(s)	509
BstNI	CCWGG	3 cut(s)	395, 462, 505
BstSCI	CCNGG	4 cut(s)	206, 393, 460, 503
BstSFI	CTRYAG	1 cut(s)	300
BstV1I	GCAGC	1 cut(s)	487
BsuRI	GGCC	2 cut(s)	26, 416
BtsCI	GGATG	2 cut(s)	193, 514
CfoI	GCGC	1 cut(s)	701
Cfr10I	RCCGGY	1 cut(s)	355
Cfr13I	GGNCC	2 cut(s)	296, 467
Csp6I	GTAC	2 cut(s)	423, 475
CspAI	ACCGGT	1 cut(s)	355
CviAII	CATG	3 cut(s)	400, 497, 608
CviJI	RGCY	9 cut(s)	26, 46, 249, 334, 406, 416, 561, 634, 645
CviKI_1	RGCY	9 cut(s)	26, 46, 249, 334, 406, 416, 561, 634, 645
CviQI	GTAC	2 cut(s)	423, 475
DdeI	CTNAG	2 cut(s)	229, 407
DpnI	GATC	2 cut(s)	330, 706
DpnII	GATC	2 cut(s)	328, 704
DriI	GACNNNNNGTC	1 cut(s)	139
EaeI	YGGCCR	2 cut(s)	24, 414
Eam1105I	GACNNNNNGTC	1 cut(s)	139
Eco130I	CCWWGG	1 cut(s)	27
Eco47I	GGWCC	2 cut(s)	296, 467
Eco47III	AGCGCT	1 cut(s)	700
Eco57I	CTGAAG	1 cut(s)	93
EcoRII	CCWGG	3 cut(s)	393, 460, 503
EcoT14I	CCWWGG	1 cut(s)	27
ErhI	CCWWGG	1 cut(s)	27
Esp3I	CGTCTC	1 cut(s)	23
FaeI	CATG	3 cut(s)	403, 500, 611
FaiI	YATR	8 cut(s)	215, 225, 401, 447, 498, 587, 594, 609
FalI	AAGNNNNNCTT	2 cut(s)	45, 77
FatI	CATG	3 cut(s)	399, 496, 607
Fnu4HI	GCNGC	1 cut(s)	501
FokI	GGATG	2 cut(s)	200, 521
Fsp4HI	GCNGC	1 cut(s)	501
FspBI	CTAG	1 cut(s)	702
GlaI	GCGC	1 cut(s)	700
GluI	GCNGC	1 cut(s)	501
GsuI	CTGGAG	1 cut(s)	377
HaeII	RGCGCY	1 cut(s)	702
HaeIII	GGCC	2 cut(s)	26, 416
HapII	CCGG	2 cut(s)	208, 356
HhaI	GCGC	1 cut(s)	701
Hin1II	CATG	3 cut(s)	403, 500, 611
Hin6I	GCGC	1 cut(s)	699
HinP1I	GCGC	1 cut(s)	699
HincII	GTYRAC	1 cut(s)	235
HindII	GTYRAC	1 cut(s)	235
HinfI	GANTC	2 cut(s)	87, 161
HpaII	CCGG	2 cut(s)	208, 356
HphI	GGTGA	1 cut(s)	28
Hpy166II	GTNNAC	1 cut(s)	235
Hpy188I	TCNGA	2 cut(s)	73, 721
Hpy188III	TCNNGA	6 cut(s)	127, 182, 274, 539, 564, 602
Hpy8I	GTNNAC	1 cut(s)	235
HpyAV	CCTTC	2 cut(s)	89, 340
HpyCH4V	TGCA	2 cut(s)	302, 326
HpyF10VI	GCNNNNNNNGC	1 cut(s)	509
HpyF3I	CTNAG	2 cut(s)	229, 407
Hsp92II	CATG	3 cut(s)	403, 500, 611
HspAI	GCGC	1 cut(s)	699
Kzo9I	GATC	2 cut(s)	328, 704
LmnI	GCTCC	4 cut(s)	369, 403, 604, 696
Lsp1109I	GCAGC	1 cut(s)	487
LweI	GCATC	1 cut(s)	499
MaeI	CTAG	1 cut(s)	702
MaeIII	GTNAC	3 cut(s)	34, 588, 669
MalI	GATC	2 cut(s)	330, 706
MboI	GATC	2 cut(s)	328, 704
MboII	GAAGA	1 cut(s)	170
MlsI	TGGCCA	1 cut(s)	416
MluCI	AATT	1 cut(s)	341
MluNI	TGGCCA	1 cut(s)	416
MnlI	CCTC	3 cut(s)	176, 178, 277
Mox20I	TGGCCA	1 cut(s)	416
MroXI	GAANNNNTTC	1 cut(s)	78
MscI	TGGCCA	1 cut(s)	416
MseI	TTAA	3 cut(s)	254, 384, 431
Msp20I	TGGCCA	1 cut(s)	416
MspCI	CTTAAG	1 cut(s)	253
MspI	CCGG	2 cut(s)	208, 356
MspR9I	CCNGG	4 cut(s)	208, 395, 462, 505
Mva1269I	GAATGC	1 cut(s)	283
MvaI	CCWGG	3 cut(s)	395, 462, 505
MwoI	GCNNNNNNNGC	1 cut(s)	509
NciI	CCSGG	1 cut(s)	208
NdeII	GATC	2 cut(s)	328, 704
NlaIII	CATG	3 cut(s)	403, 500, 611
NlaIV	GGNNCC	2 cut(s)	201, 354
NmuCI	GTSAC	1 cut(s)	34
PctI	GAATGC	1 cut(s)	283
PdmI	GAANNNNTTC	1 cut(s)	78
PfeI	GAWTC	2 cut(s)	87, 161
PflMI	CCANNNNNTGG	1 cut(s)	400
PinAI	ACCGGT	1 cut(s)	355
PkrI	GCNGC	1 cut(s)	502
PsiI	TTATAA	1 cut(s)	225
Psp6I	CCWGG	3 cut(s)	393, 460, 503
PspGI	CCWGG	3 cut(s)	393, 460, 503
PspN4I	GGNNCC	2 cut(s)	201, 354
PspPI	GGNCC	2 cut(s)	296, 467
PstI	CTGCAG	1 cut(s)	304
RsaI	GTAC	2 cut(s)	424, 476
RsaNI	GTAC	2 cut(s)	423, 475
SaqAI	TTAA	3 cut(s)	254, 384, 431
SatI	GCNGC	1 cut(s)	501
Sau3AI	GATC	2 cut(s)	328, 704
Sau96I	GGNCC	2 cut(s)	296, 467
ScrFI	CCNGG	4 cut(s)	208, 395, 462, 505
SfaNI	GCATC	1 cut(s)	499
SfcI	CTRYAG	1 cut(s)	300
SinI	GGWCC	2 cut(s)	296, 467
SmlI	CTYRAG	4 cut(s)	182, 242, 253, 562
SmoI	CTYRAG	4 cut(s)	182, 242, 253, 562
Sse9I	AATT	1 cut(s)	341
SsiI	CCGC	1 cut(s)	154
SspMI	CTAG	1 cut(s)	702
StyD4I	CCNGG	4 cut(s)	206, 393, 460, 503
StyI	CCWWGG	1 cut(s)	27
TasI	AATT	1 cut(s)	341
TatI	WGTACW	1 cut(s)	422
TfiI	GAWTC	2 cut(s)	87, 161
Tru1I	TTAA	3 cut(s)	254, 384, 431
Tru9I	TTAA	3 cut(s)	254, 384, 431
TseFI	GTSAC	1 cut(s)	34
TseI	GCWGC	1 cut(s)	500
Tsp45I	GTSAC	1 cut(s)	34
TspDTI	ATGAA	1 cut(s)	624
Van91I	CCANNNNNTGG	1 cut(s)	400
Vha464I	CTTAAG	1 cut(s)	253
VpaK11BI	GGWCC	2 cut(s)	296, 467
XmnI	GAANNNNTTC	1 cut(s)	78
XspI	CTAG	1 cut(s)	702

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.