RLG00000029314

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0003929
Physical Location & Seq
Reverse (-)
36412068 .. 36413123
1056 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000029314

Sequence Viewer

Length: 384 bp
ATGGCATGTAAAGTCGTAACAATATCTTTCAATTGCAATTTTCTTGACAGTTCGAATAGTCTGTTTGCTACTCTGCTTAATTCCCACTGTTCTGGTTCATCATTAAGCATTTTGATTGACATTCAGTCAAATACAAGGCGGTTTGAATCCCTCTTTCTTTATCTTCTTGAGGATGTTGCTTTGGAACCCACCCGGTTAAATAAAATTCTTGTACAGGTCCAGCGAGATCTGTATCTTTTACTTTCAAGGTTTATATTCTTTTATAACTCAGTTGACAAACTTGAGAGCTTCTTAAGGCACTTTCCCGTATTCCCGAATGCTTTTCTGGTTGGTGGTCCTGCAGACTTCTTTGTTATTGAACTTGCAGATCAGGCATGGAGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

128

Amino Acids

14.5

Weight (kDa)

5.18

Isoelectric Point (pI)

44.84

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 264
AciI CCGC 1 cut(s) 139
AcsI RAATTY 1 cut(s) 204
AfaI GTAC 1 cut(s) 213
AflII CTTAAG 1 cut(s) 292
AgsI TTSAA 4 cut(s) 31, 146, 246, 359
AhdI GACNNNNNGTC 1 cut(s) 124
AluBI AGCT 2 cut(s) 288, 381
AluI AGCT 2 cut(s) 288, 381
ApoI RAATTY 1 cut(s) 204
AspS9I GGNCC 2 cut(s) 217, 335
AsuC2I CCSGG 1 cut(s) 193
AsuII TTCGAA 1 cut(s) 53
AvaII GGWCC 2 cut(s) 217, 335
BcnI CCSGG 1 cut(s) 193
BfmI CTRYAG 1 cut(s) 339
BfrI CTTAAG 1 cut(s) 292
BglII AGATCT 1 cut(s) 226
Bme1390I CCNGG 1 cut(s) 193
Bme18I GGWCC 2 cut(s) 217, 335
BmeRI GACNNNNNGTC 1 cut(s) 124
BmgT120I GGNCC 2 cut(s) 217, 335
BmiI GGNNCC 1 cut(s) 186
BmrFI CCNGG 1 cut(s) 193
Bpu14I TTCGAA 1 cut(s) 53
BpuEI CTTGAG 2 cut(s) 188, 302
BpuMI CCSGG 1 cut(s) 193
BsaBI GATNNNNATC 1 cut(s) 231
Bse8I GATNNNNATC 1 cut(s) 231
BseGI GGATG 1 cut(s) 178
BseJI GATNNNNATC 1 cut(s) 231
BseMII CTCAG 1 cut(s) 282
BsiSI CCGG 1 cut(s) 193
BsmI GAATGC 1 cut(s) 322
Bsp119I TTCGAA 1 cut(s) 53
Bsp1407I TGTACA 1 cut(s) 211
Bsp143I GATC 2 cut(s) 226, 367
BspACI CCGC 1 cut(s) 139
BspCNI CTCAG 1 cut(s) 281
BspLI GGNNCC 1 cut(s) 186
BspMAI CTGCAG 1 cut(s) 343
BspT104I TTCGAA 1 cut(s) 53
BspTI CTTAAG 1 cut(s) 292
BsrGI TGTACA 1 cut(s) 211
BssMI GATC 2 cut(s) 226, 367
Bst4CI ACNGT 2 cut(s) 50, 89
BstAFI CTTAAG 1 cut(s) 292
BstAUI TGTACA 1 cut(s) 211
BstBI TTCGAA 1 cut(s) 53
BstDEI CTNAG 1 cut(s) 268
BstF5I GGATG 1 cut(s) 178
BstKTI GATC 2 cut(s) 229, 370
BstMBI GATC 2 cut(s) 226, 367
BstMWI GCNNNNNNNGC 1 cut(s) 371
BstNSI RCATGY 1 cut(s) 9
BstSCI CCNGG 1 cut(s) 191
BstSFI CTRYAG 1 cut(s) 339
BstX2I RGATCY 1 cut(s) 226
BstXI CCANNNNNNTGG 1 cut(s) 92
BstYI RGATCY 1 cut(s) 226
BtsCI GGATG 1 cut(s) 178
BtsIMutI CAGTG 1 cut(s) 85
Cfr13I GGNCC 2 cut(s) 217, 335
Csp6I GTAC 1 cut(s) 212
CviAII CATG 2 cut(s) 6, 375
CviJI RGCY 2 cut(s) 288, 381
CviKI_1 RGCY 2 cut(s) 288, 381
CviQI GTAC 1 cut(s) 212
DdeI CTNAG 1 cut(s) 268
DpnI GATC 2 cut(s) 228, 369
DpnII GATC 2 cut(s) 226, 367
DriI GACNNNNNGTC 1 cut(s) 124
Eam1105I GACNNNNNGTC 1 cut(s) 124
Eco47I GGWCC 2 cut(s) 217, 335
FaeI CATG 2 cut(s) 9, 378
FaiI YATR 4 cut(s) 7, 254, 264, 376
FatI CATG 2 cut(s) 5, 374
FokI GGATG 1 cut(s) 185
HapII CCGG 1 cut(s) 193
Hin1II CATG 2 cut(s) 9, 378
HincII GTYRAC 1 cut(s) 274
HindII GTYRAC 1 cut(s) 274
HinfI GANTC 1 cut(s) 146
HpaII CCGG 1 cut(s) 193
Hpy166II GTNNAC 1 cut(s) 274
Hpy188III TCNNGA 3 cut(s) 44, 167, 313
Hpy8I GTNNAC 1 cut(s) 274
HpyCH4III ACNGT 2 cut(s) 50, 89
HpyCH4V TGCA 3 cut(s) 36, 341, 365
HpyF10VI GCNNNNNNNGC 1 cut(s) 371
HpyF3I CTNAG 1 cut(s) 268
Hsp92II CATG 2 cut(s) 9, 378
Kzo9I GATC 2 cut(s) 226, 367
LmnI GCTCC 1 cut(s) 378
LpnPI CCDG 7 cut(s) 78, 200, 206, 233, 311, 351, 356
MaeIII GTNAC 1 cut(s) 16
MalI GATC 2 cut(s) 228, 369
MboI GATC 2 cut(s) 226, 367
MboII GAAGA 1 cut(s) 155
MfeI CAATTG 1 cut(s) 31
MflI RGATCY 1 cut(s) 226
MluCI AATT 4 cut(s) 31, 37, 79, 204
MnlI CCTC 2 cut(s) 161, 163
MseI TTAA 4 cut(s) 78, 104, 197, 293
MspCI CTTAAG 1 cut(s) 292
MspI CCGG 1 cut(s) 193
MspR9I CCNGG 1 cut(s) 193
MunI CAATTG 1 cut(s) 31
Mva1269I GAATGC 1 cut(s) 322
MwoI GCNNNNNNNGC 1 cut(s) 371
NciI CCSGG 1 cut(s) 193
NdeII GATC 2 cut(s) 226, 367
NlaIII CATG 2 cut(s) 9, 378
NlaIV GGNNCC 1 cut(s) 186
NspI RCATGY 1 cut(s) 9
NspV TTCGAA 1 cut(s) 53
PctI GAATGC 1 cut(s) 322
PfeI GAWTC 1 cut(s) 146
PsiI TTATAA 1 cut(s) 264
PspN4I GGNNCC 1 cut(s) 186
PspPI GGNCC 2 cut(s) 217, 335
PstI CTGCAG 1 cut(s) 343
PsuI RGATCY 1 cut(s) 226
RsaI GTAC 1 cut(s) 213
RsaNI GTAC 1 cut(s) 212
SaqAI TTAA 4 cut(s) 78, 104, 197, 293
Sau3AI GATC 2 cut(s) 226, 367
Sau96I GGNCC 2 cut(s) 217, 335
ScrFI CCNGG 1 cut(s) 193
SetI ASST 4 cut(s) 219, 251, 290, 383
SfcI CTRYAG 1 cut(s) 339
SfuI TTCGAA 1 cut(s) 53
SinI GGWCC 2 cut(s) 217, 335
SmlI CTYRAG 3 cut(s) 167, 281, 292
SmoI CTYRAG 3 cut(s) 167, 281, 292
Sse9I AATT 4 cut(s) 31, 37, 79, 204
SsiI CCGC 1 cut(s) 139
StyD4I CCNGG 1 cut(s) 191
TaaI ACNGT 2 cut(s) 50, 89
TaqI TCGA 1 cut(s) 53
TasI AATT 4 cut(s) 31, 37, 79, 204
TatI WGTACW 1 cut(s) 211
TfiI GAWTC 1 cut(s) 146
Tru1I TTAA 4 cut(s) 78, 104, 197, 293
Tru9I TTAA 4 cut(s) 78, 104, 197, 293
TscAI CASTG 1 cut(s) 92
TspDTI ATGAA 1 cut(s) 87
TspRI CASTG 1 cut(s) 92
Vha464I CTTAAG 1 cut(s) 292
VpaK11BI GGWCC 2 cut(s) 217, 335
XapI RAATTY 1 cut(s) 204
XceI RCATGY 1 cut(s) 9
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.