Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0005075

Physical Location & Seq

Genomic Coordinates Reverse (-)

24733785 .. 24736876

Gene Structure 3092 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G61500.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 942 bp

ATGGTGCTTTCGCAAAAGCTTCATGAAGCATTTAAAGGAACAGTTGAGAGGATCACAGGTCCTCGTACGATCTCGGCGTTCAAGGAGAAGGGAGTTCTCAGCGTCAGCGAGTTCGTACTTGCCGGAGATAATCTCGTCTCCAAGTGTCCCACCTGGTCTTGGGAATCTGGTGACGCAAGCAAAAGGAAGCCATACTTGCCCTCGGACAAACAGTTTTTGATTACTAGAAATGTACCTTGTCTACGGAGAGCTGCTTCTGTGGCAGAGGATTATGAAGCTGCTGGAGGTGAAGTGTTGGTTGATGATGAAGATAATGATGGTTGGCTGGCTACACATGGGAAACCGAAAGATAAAGGCAAGGAAGAGGATAACTTACCATCCATGGATGCCTTGGATATAAACGAGAAAAATACTATCCAATCAATACCTACGTATTTTGGAGGTGAGGAGGATGATGATATTCCAGACATGGAGGAGTTCGATGAGGCTGACAATGTGGTAGAAAATGATCCGGCAACTCTTCAGTCAACTTATCTTGTGGCTCATGAACCTGATGACGATAACATTCTCCGAACTCGGACATATGATCTCAGCATAACGTATGATAAGTATTACCAAACTCCTCGTGTTTGGCTGACCGGTTATGATGAGTCAAGGATGCTGCTGCAACCTGAACTTGTAATGGAGGATGTTAGCCAAGACCATGCTCGTAAAACGGTCACAATCGAAGATCATCCACACTTGCCTGGTAAACATGCTTCAGTTCATCCATGTCGGCATGGAGCTGTTATGAAGAAAATCATTGATGTATTAATGTCGCGTGGAGTAGAACCTGAAGTCGACAAGTACCTCTTCCTGTTCTTGAAGTTCATGGCATCAGTTATTCCAACAATTGAGTACGATTACACAATGGACTTTGATCTCGGTAGCTCAAGCACCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000045 GO:0000151 GO:0000153 GO:0000422 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006914 GO:0006996 GO:0007005 GO:0007033 GO:0008150 GO:0008152 GO:0009056 GO:0009987 GO:0016043 GO:0016236 GO:0016740 GO:0019776 GO:0022411 GO:0022607 GO:0032991 GO:0044085 GO:0044237 GO:0044248 GO:0044424 GO:0044444 GO:0044464 GO:0044804 GO:0061726 GO:0061919 GO:0070925 GO:0071840 GO:1902494 GO:1903008 GO:1905037 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko04136 ko04138 ko04140 ko05167 map04136 map04138 map04140 map05167

Pfam Domains

Protein Families

Autophagy_C Autophagy_N Autophagy_act_C

Protein Analysis

313

Amino Acids

35.33

Weight (kDa)

4.63

Isoelectric Point (pI)

41.83

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Autophagy_act_C	PF03987	37 - 256	1e-35	Autophagocytosis associated protein, active-site domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005075)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G61500 AT5G61500
fragaria_vesca	FvH4_7g09530 FvH4_7g09530 FvH4_7g09530 FvH4_7g09530
malus_domestica	MD02G1218100.v1.1 MD07G1099000.v1.1 MD07G1099100.v1.1
prunus_persica	Prupe.2G123000_v2.0.a1 Prupe.2G123000_v2.0.a1 Prupe.2G123000_v2.0.a1
pyrus_communis	pycom1310g00040
rosa_chinensis	RchiOBHm_Chr1g0346321 RchiOBHm_Chr4g0385331
rosa_laevigata	RLG00000028805
rosa_multiflora	Rmu_co8505273.1_g000001 Rmu_sc0003363.1_g000042 Rmu_sc0003522.1_g000055
rosa_roxburghii	Rroxscaffold_4G00308710
rosa_rugosa	Rorug01G0179200 Rorug01G0179300 Rorug01G0179400 Rorug02G0522300 Rorug04G0105900
rosa_samantha	Rh1AG198600 Rh1BG164600 Rh1CG183900 Rh1DG195300
rosa_wichuraiana	Rw1G016690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	241, 840
AccII	CGCG	1 cut(s)	820
AclWI	GGATC	2 cut(s)	59, 503
AcuI	CTGAAG	3 cut(s)	506, 744, 855
AfaI	GTAC	5 cut(s)	67, 117, 234, 848, 899
AfiI	CCNNNNNNNGG	1 cut(s)	159
AgeI	ACCGGT	1 cut(s)	638
AgsI	TTSAA	2 cut(s)	82, 865
AjnI	CCWGG	2 cut(s)	152, 745
AluBI	AGCT	5 cut(s)	19, 251, 278, 785, 930
AluI	AGCT	5 cut(s)	19, 251, 278, 785, 930
Alw26I	GTCTC	1 cut(s)	142
AlwI	GGATC	2 cut(s)	59, 503
ApeKI	GCWGC	4 cut(s)	251, 278, 661, 664
AseI	ATTAAT	1 cut(s)	812
AsiGI	ACCGGT	1 cut(s)	638
AspS9I	GGNCC	1 cut(s)	59
AsuHPI	GGTGA	3 cut(s)	182, 299, 455
AvaII	GGWCC	1 cut(s)	59
BarI	GAAGNNNNNNTAC	2 cut(s)	742, 774
BauI	CACGAG	1 cut(s)	624
BbvI	GCAGC	4 cut(s)	238, 265, 648, 651
BccI	CCATC	2 cut(s)	311, 385
BciT130I	CCWGG	2 cut(s)	154, 747
BcoDI	GTCTC	1 cut(s)	142
BfaI	CTAG	1 cut(s)	225
BisI	GCNGC	4 cut(s)	252, 279, 662, 665
BlsI	GCNGC	4 cut(s)	253, 280, 663, 666
Bme1390I	CCNGG	2 cut(s)	154, 747
Bme18I	GGWCC	1 cut(s)	59
BmgT120I	GGNCC	1 cut(s)	59
BmrFI	CCNGG	2 cut(s)	154, 747
BmsI	GCATC	3 cut(s)	376, 648, 884
BplI	GAGNNNNNCTC	2 cut(s)	117, 149
BpmI	CTGGAG	1 cut(s)	303
BpuEI	CTTGAG	1 cut(s)	916
BsaAI	YACGTR	1 cut(s)	432
BsaJI	CCNNGG	3 cut(s)	201, 381, 390
BsaWI	WCCGGW	1 cut(s)	638
BsaXI	ACNNNNNCTCC	2 cut(s)	276, 306
Bsc4I	CCNNNNNNNGG	1 cut(s)	159
Bse118I	RCCGGY	1 cut(s)	638
BseBI	CCWGG	2 cut(s)	154, 747
BseDI	CCNNGG	3 cut(s)	201, 381, 390
BseGI	GGATG	7 cut(s)	377, 391, 457, 663, 694, 733, 766
BseLI	CCNNNNNNNGG	1 cut(s)	159
BseMII	CTCAG	2 cut(s)	112, 604
BseRI	GAGGAG	3 cut(s)	461, 488, 612
BseXI	GCAGC	4 cut(s)	238, 265, 648, 651
Bsh1236I	CGCG	1 cut(s)	820
BshTI	ACCGGT	1 cut(s)	638
BsiSI	CCGG	3 cut(s)	123, 512, 639
BsiWI	CGTACG	1 cut(s)	65
BslFI	GGGAC	1 cut(s)	132
BslI	CCNNNNNNNGG	1 cut(s)	159
BsmAI	GTCTC	1 cut(s)	142
BsmBI	CGTCTC	1 cut(s)	142
BsmFI	GGGAC	1 cut(s)	132
Bsp143I	GATC	6 cut(s)	51, 69, 508, 586, 730, 919
Bsp19I	CCATGG	1 cut(s)	381
BspCNI	CTCAG	2 cut(s)	111, 603
BspFNI	CGCG	1 cut(s)	820
BspHI	TCATGA	2 cut(s)	22, 544
BspPI	GGATC	2 cut(s)	59, 503
BsrFI	RCCGGY	1 cut(s)	638
BssAI	RCCGGY	1 cut(s)	638
BssECI	CCNNGG	3 cut(s)	201, 381, 390
BssMI	GATC	6 cut(s)	51, 69, 508, 586, 730, 919
BssSI	CACGAG	1 cut(s)	624
BssT1I	CCWWGG	2 cut(s)	381, 390
Bst2BI	CACGAG	1 cut(s)	624
Bst2UI	CCWGG	2 cut(s)	154, 747
Bst4CI	ACNGT	3 cut(s)	43, 213, 718
Bst6I	CTCTTC	3 cut(s)	357, 525, 857
BstBAI	YACGTR	1 cut(s)	432
BstC8I	GCNNGC	2 cut(s)	178, 327
BstDEI	CTNAG	2 cut(s)	98, 590
BstDSI	CCRYGG	1 cut(s)	381
BstF5I	GGATG	7 cut(s)	377, 391, 457, 663, 694, 733, 766
BstFNI	CGCG	1 cut(s)	820
BstKTI	GATC	6 cut(s)	54, 72, 511, 589, 733, 922
BstMAI	GTCTC	1 cut(s)	142
BstMBI	GATC	6 cut(s)	51, 69, 508, 586, 730, 919
BstMWI	GCNNNNNNNGC	2 cut(s)	196, 260
BstNI	CCWGG	2 cut(s)	154, 747
BstNSI	RCATGY	1 cut(s)	758
BstSCI	CCNGG	2 cut(s)	152, 745
BstSNI	TACGTA	1 cut(s)	432
BstUI	CGCG	1 cut(s)	820
BstV1I	GCAGC	4 cut(s)	238, 265, 648, 651
BtgI	CCRYGG	1 cut(s)	381
BtsCI	GGATG	7 cut(s)	377, 391, 457, 663, 694, 733, 766
Cac8I	GCNNGC	2 cut(s)	178, 327
CciI	TCATGA	2 cut(s)	22, 544
Cfr10I	RCCGGY	1 cut(s)	638
Cfr13I	GGNCC	1 cut(s)	59
CseI	GACGC	2 cut(s)	91, 182
CsiI	ACCWGGT	1 cut(s)	152
Csp6I	GTAC	5 cut(s)	66, 116, 233, 847, 898
CspAI	ACCGGT	1 cut(s)	638
CviQI	GTAC	5 cut(s)	66, 116, 233, 847, 898
DdeI	CTNAG	2 cut(s)	98, 590
DpnI	GATC	6 cut(s)	53, 71, 510, 588, 732, 921
DpnII	GATC	6 cut(s)	51, 69, 508, 586, 730, 919
DraI	TTTAAA	1 cut(s)	34
Eam1104I	CTCTTC	3 cut(s)	357, 525, 857
EarI	CTCTTC	3 cut(s)	357, 525, 857
Eco105I	TACGTA	1 cut(s)	432
Eco130I	CCWWGG	2 cut(s)	381, 390
Eco47I	GGWCC	1 cut(s)	59
Eco57I	CTGAAG	3 cut(s)	506, 744, 855
EcoO109I	RGGNCCY	1 cut(s)	59
EcoRII	CCWGG	2 cut(s)	152, 745
EcoT14I	CCWWGG	2 cut(s)	381, 390
ErhI	CCWWGG	2 cut(s)	381, 390
Esp3I	CGTCTC	1 cut(s)	142
FalI	AAGNNNNNCTT	4 cut(s)	179, 211, 836, 868
FaqI	GGGAC	1 cut(s)	132
FauNDI	CATATG	1 cut(s)	583
FblI	GTMKAC	2 cut(s)	241, 840
Fnu4HI	GCNGC	4 cut(s)	252, 279, 662, 665
FokI	GGATG	7 cut(s)	364, 398, 464, 670, 701, 720, 753
Fsp4HI	GCNGC	4 cut(s)	252, 279, 662, 665
FspBI	CTAG	1 cut(s)	225
GluI	GCNGC	4 cut(s)	252, 279, 662, 665
GsuI	CTGGAG	1 cut(s)	303
HapII	CCGG	3 cut(s)	123, 512, 639
HgaI	GACGC	2 cut(s)	91, 182
HincII	GTYRAC	2 cut(s)	528, 841
HindII	GTYRAC	2 cut(s)	528, 841
HindIII	AAGCTT	1 cut(s)	17
HinfI	GANTC	2 cut(s)	164, 650
HpaII	CCGG	3 cut(s)	123, 512, 639
HphI	GGTGA	3 cut(s)	182, 299, 455
Hpy166II	GTNNAC	4 cut(s)	242, 528, 752, 841
Hpy188I	TCNGA	3 cut(s)	205, 572, 579
Hpy188III	TCNNGA	4 cut(s)	23, 464, 545, 862
Hpy8I	GTNNAC	4 cut(s)	242, 528, 752, 841
HpyAV	CCTTC	1 cut(s)	82
HpyCH4III	ACNGT	3 cut(s)	43, 213, 718
HpyCH4IV	ACGT	2 cut(s)	431, 599
HpyCH4V	TGCA	1 cut(s)	667
HpyF10VI	GCNNNNNNNGC	2 cut(s)	196, 260
HpyF3I	CTNAG	2 cut(s)	98, 590
HpySE526I	ACGT	2 cut(s)	431, 599
Kzo9I	GATC	6 cut(s)	51, 69, 508, 586, 730, 919
LmnI	GCTCC	1 cut(s)	782
Lsp1109I	GCAGC	4 cut(s)	238, 265, 648, 651
LweI	GCATC	3 cut(s)	376, 648, 884
MabI	ACCWGGT	1 cut(s)	152
MaeI	CTAG	1 cut(s)	225
MaeII	ACGT	2 cut(s)	431, 599
MaeIII	GTNAC	2 cut(s)	170, 718
MalI	GATC	6 cut(s)	53, 71, 510, 588, 732, 921
MboI	GATC	6 cut(s)	51, 69, 508, 586, 730, 919
MboII	GAAGA	6 cut(s)	320, 374, 512, 740, 805, 844
MfeI	CAATTG	1 cut(s)	891
MluCI	AATT	1 cut(s)	891
MlyI	GAGTC	1 cut(s)	659
MmeI	TCCRAC	1 cut(s)	911
MseI	TTAA	2 cut(s)	33, 812
MspI	CCGG	3 cut(s)	123, 512, 639
MspR9I	CCNGG	2 cut(s)	154, 747
MunI	CAATTG	1 cut(s)	891
MvaI	CCWGG	2 cut(s)	154, 747
MvnI	CGCG	1 cut(s)	820
MwoI	GCNNNNNNNGC	2 cut(s)	196, 260
NcoI	CCATGG	1 cut(s)	381
NdeI	CATATG	1 cut(s)	583
NdeII	GATC	6 cut(s)	51, 69, 508, 586, 730, 919
NmeAIII	GCCGAG	1 cut(s)	53
NmuCI	GTSAC	2 cut(s)	170, 718
NspI	RCATGY	1 cut(s)	758
PagI	TCATGA	2 cut(s)	22, 544
PcsI	WCGNNNNNNNCGW	1 cut(s)	74
PfeI	GAWTC	1 cut(s)	164
Pfl23II	CGTACG	1 cut(s)	65
PinAI	ACCGGT	1 cut(s)	638
PkrI	GCNGC	4 cut(s)	253, 280, 663, 666
PleI	GAGTC	1 cut(s)	658
PpsI	GAGTC	1 cut(s)	658
Ppu21I	YACGTR	1 cut(s)	432
PpuMI	RGGWCCY	1 cut(s)	59
PshBI	ATTAAT	1 cut(s)	812
Psp5II	RGGWCCY	1 cut(s)	59
Psp6I	CCWGG	2 cut(s)	152, 745
PspGI	CCWGG	2 cut(s)	152, 745
PspLI	CGTACG	1 cut(s)	65
PspPI	GGNCC	1 cut(s)	59
PspPPI	RGGWCCY	1 cut(s)	59
RsaI	GTAC	5 cut(s)	67, 117, 234, 848, 899
RsaNI	GTAC	5 cut(s)	66, 116, 233, 847, 898
SalI	GTCGAC	1 cut(s)	839
SaqAI	TTAA	2 cut(s)	33, 812
SatI	GCNGC	4 cut(s)	252, 279, 662, 665
Sau3AI	GATC	6 cut(s)	51, 69, 508, 586, 730, 919
Sau96I	GGNCC	1 cut(s)	59
SchI	GAGTC	1 cut(s)	659
ScrFI	CCNGG	2 cut(s)	154, 747
SexAI	ACCWGGT	1 cut(s)	152
SfaNI	GCATC	3 cut(s)	376, 648, 884
SinI	GGWCC	1 cut(s)	59
SmlI	CTYRAG	1 cut(s)	931
SmoI	CTYRAG	1 cut(s)	931
SnaBI	TACGTA	1 cut(s)	432
Sse9I	AATT	1 cut(s)	891
SspMI	CTAG	1 cut(s)	225
StyD4I	CCNGG	2 cut(s)	152, 745
StyI	CCWWGG	2 cut(s)	381, 390
TaaI	ACNGT	3 cut(s)	43, 213, 718
TaiI	ACGT	2 cut(s)	434, 602
TaqI	TCGA	3 cut(s)	480, 726, 840
TasI	AATT	1 cut(s)	891
TfiI	GAWTC	1 cut(s)	164
Tru1I	TTAA	2 cut(s)	33, 812
Tru9I	TTAA	2 cut(s)	33, 812
TseFI	GTSAC	2 cut(s)	170, 718
TseI	GCWGC	4 cut(s)	251, 278, 661, 664
Tsp45I	GTSAC	2 cut(s)	170, 718
TspDTI	ATGAA	8 cut(s)	11, 39, 288, 321, 561, 755, 806, 859
TspGWI	ACGGA	1 cut(s)	259
VpaK11BI	GGWCC	1 cut(s)	59
VspI	ATTAAT	1 cut(s)	812
XceI	RCATGY	1 cut(s)	758
XcmI	CCANNNNNNNNNTGG	1 cut(s)	388
XmiI	GTMKAC	2 cut(s)	241, 840
XspI	CTAG	1 cut(s)	225

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.