Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr07

Orthogroup ID

OG0005075

Physical Location & Seq

Genomic Coordinates Forward (+)

10906301 .. 10906767

Gene Structure 467 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD07G1099000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 183 bp

ATGGTTTTGAAACAGAAGCTGCACGAGGCGTTCAAAGGAACGGTGGAGAAAATCACAGGTCCCCGCACCGTCTCCGCCTTCAAAGAGAAAGGCGTTCTCAGCGTCTCCGAGTTCGTCACCTCCGGCGATAACCTCGTCTCCAAGTGCCCCACCTGGTCCTGGGAATCTGGTGAACCGAGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000045 GO:0000151 GO:0000153 GO:0000422 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006914 GO:0006996 GO:0007005 GO:0007033 GO:0008150 GO:0008152 GO:0009056 GO:0009987 GO:0016043 GO:0016236 GO:0016740 GO:0019776 GO:0022411 GO:0022607 GO:0032991 GO:0044085 GO:0044237 GO:0044248 GO:0044424 GO:0044444 GO:0044464 GO:0044804 GO:0061726 GO:0061919 GO:0070925 GO:0071840 GO:1902494 GO:1903008 GO:1905037 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko04136 ko04138 ko04140 ko05167 map04136 map04138 map04140 map05167

Pfam Domains

Protein Families

Autophagy_C Autophagy_N Autophagy_act_C

Protein Analysis

61

Amino Acids

6.57

Weight (kDa)

7.89

Isoelectric Point (pI)

8.47

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005075)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G61500 AT5G61500
fragaria_vesca	FvH4_7g09530 FvH4_7g09530 FvH4_7g09530 FvH4_7g09530
malus_domestica	MD02G1218100.v1.1 MD07G1099000.v1.1 MD07G1099100.v1.1
prunus_persica	Prupe.2G123000_v2.0.a1 Prupe.2G123000_v2.0.a1 Prupe.2G123000_v2.0.a1
pyrus_communis	pycom1310g00040
rosa_chinensis	RchiOBHm_Chr1g0346321 RchiOBHm_Chr4g0385331
rosa_laevigata	RLG00000028805
rosa_multiflora	Rmu_co8505273.1_g000001 Rmu_sc0003363.1_g000042 Rmu_sc0003522.1_g000055
rosa_roxburghii	Rroxscaffold_4G00308710
rosa_rugosa	Rorug01G0179200 Rorug01G0179300 Rorug01G0179400 Rorug02G0522300 Rorug04G0105900
rosa_samantha	Rh1AG198600 Rh1BG164600 Rh1CG183900 Rh1DG195300
rosa_wichuraiana	Rw1G016690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	64, 75
AfiI	CCNNNNNNNGG	1 cut(s)	159
AgsI	TTSAA	3 cut(s)	10, 34, 82
AjnI	CCWGG	2 cut(s)	152, 158
AluBI	AGCT	2 cut(s)	19, 180
AluI	AGCT	2 cut(s)	19, 180
Alw26I	GTCTC	3 cut(s)	76, 109, 142
AlwNI	CAGNNNCTG	1 cut(s)	19
ApeKI	GCWGC	1 cut(s)	19
AspS9I	GGNCC	2 cut(s)	59, 156
AsuHPI	GGTGA	2 cut(s)	109, 182
AvaII	GGWCC	2 cut(s)	59, 156
BaeGI	GKGCMC	1 cut(s)	149
BauI	CACGAG	1 cut(s)	23
BbvI	GCAGC	1 cut(s)	6
BciT130I	CCWGG	2 cut(s)	154, 160
BcoDI	GTCTC	3 cut(s)	76, 109, 142
BfaI	CTAG	1 cut(s)	181
BisI	GCNGC	1 cut(s)	20
BlsI	GCNGC	1 cut(s)	21
Bme1390I	CCNGG	2 cut(s)	154, 160
Bme18I	GGWCC	2 cut(s)	59, 156
BmgT120I	GGNCC	2 cut(s)	59, 156
BmiI	GGNNCC	1 cut(s)	61
BmrFI	CCNGG	2 cut(s)	154, 160
BsaJI	CCNNGG	1 cut(s)	159
BsaXI	ACNNNNNCTCC	2 cut(s)	122, 152
Bsc4I	CCNNNNNNNGG	1 cut(s)	159
BseBI	CCWGG	2 cut(s)	154, 160
BseDI	CCNNGG	1 cut(s)	159
BseLI	CCNNNNNNNGG	1 cut(s)	159
BseMII	CTCAG	1 cut(s)	112
BseSI	GKGCMC	1 cut(s)	149
BseXI	GCAGC	1 cut(s)	6
BsgI	GTGCAG	1 cut(s)	5
BsiSI	CCGG	1 cut(s)	123
BslFI	GGGAC	1 cut(s)	45
BslI	CCNNNNNNNGG	1 cut(s)	159
BsmAI	GTCTC	3 cut(s)	76, 109, 142
BsmBI	CGTCTC	3 cut(s)	76, 109, 142
BsmFI	GGGAC	1 cut(s)	45
Bsp1286I	GDGCHC	1 cut(s)	149
BspACI	CCGC	2 cut(s)	64, 75
BspCNI	CTCAG	1 cut(s)	111
BspLI	GGNNCC	1 cut(s)	61
BssECI	CCNNGG	1 cut(s)	159
BssSI	CACGAG	1 cut(s)	23
Bst2BI	CACGAG	1 cut(s)	23
Bst2UI	CCWGG	2 cut(s)	154, 160
Bst4CI	ACNGT	2 cut(s)	43, 70
BstDEI	CTNAG	1 cut(s)	98
BstMAI	GTCTC	3 cut(s)	76, 109, 142
BstMWI	GCNNNNNNNGC	1 cut(s)	99
BstNI	CCWGG	2 cut(s)	154, 160
BstSCI	CCNGG	2 cut(s)	152, 158
BstSLI	GKGCMC	1 cut(s)	149
BstV1I	GCAGC	1 cut(s)	6
CaiI	CAGNNNCTG	1 cut(s)	19
Cfr13I	GGNCC	2 cut(s)	59, 156
CseI	GACGC	1 cut(s)	91
CsiI	ACCWGGT	1 cut(s)	152
CviJI	RGCY	2 cut(s)	19, 180
CviKI_1	RGCY	2 cut(s)	19, 180
DdeI	CTNAG	1 cut(s)	98
EciI	GGCGGA	1 cut(s)	64
Eco47I	GGWCC	2 cut(s)	59, 156
EcoO109I	RGGNCCY	1 cut(s)	59
EcoRII	CCWGG	2 cut(s)	152, 158
Esp3I	CGTCTC	3 cut(s)	76, 109, 142
FaqI	GGGAC	1 cut(s)	45
FauI	CCCGC	1 cut(s)	71
Fnu4HI	GCNGC	1 cut(s)	20
Fsp4HI	GCNGC	1 cut(s)	20
FspBI	CTAG	1 cut(s)	181
GluI	GCNGC	1 cut(s)	20
HapII	CCGG	1 cut(s)	123
HgaI	GACGC	1 cut(s)	91
HinfI	GANTC	1 cut(s)	164
HpaII	CCGG	1 cut(s)	123
HphI	GGTGA	2 cut(s)	109, 182
Hpy166II	GTNNAC	1 cut(s)	173
Hpy188I	TCNGA	1 cut(s)	109
Hpy8I	GTNNAC	1 cut(s)	173
HpyAV	CCTTC	1 cut(s)	88
HpyCH4III	ACNGT	2 cut(s)	43, 70
HpyCH4V	TGCA	1 cut(s)	22
HpyF10VI	GCNNNNNNNGC	1 cut(s)	99
HpyF3I	CTNAG	1 cut(s)	98
LpnPI	CCDG	7 cut(s)	42, 136, 139, 145, 153, 166, 172
Lsp1109I	GCAGC	1 cut(s)	6
MabI	ACCWGGT	1 cut(s)	152
MaeI	CTAG	1 cut(s)	181
MaeIII	GTNAC	1 cut(s)	115
MhlI	GDGCHC	1 cut(s)	149
MnlI	CCTC	3 cut(s)	19, 130, 143
MspI	CCGG	1 cut(s)	123
MspR9I	CCNGG	2 cut(s)	154, 160
MvaI	CCWGG	2 cut(s)	154, 160
MwoI	GCNNNNNNNGC	1 cut(s)	99
NlaIV	GGNNCC	1 cut(s)	61
NmuCI	GTSAC	1 cut(s)	115
PfeI	GAWTC	1 cut(s)	164
PkrI	GCNGC	1 cut(s)	21
PpuMI	RGGWCCY	1 cut(s)	59
Psp5II	RGGWCCY	1 cut(s)	59
Psp6I	CCWGG	2 cut(s)	152, 158
PspGI	CCWGG	2 cut(s)	152, 158
PspN4I	GGNNCC	1 cut(s)	61
PspPI	GGNCC	2 cut(s)	59, 156
PspPPI	RGGWCCY	1 cut(s)	59
PstNI	CAGNNNCTG	1 cut(s)	19
SatI	GCNGC	1 cut(s)	20
Sau96I	GGNCC	2 cut(s)	59, 156
ScrFI	CCNGG	2 cut(s)	154, 160
SduI	GDGCHC	1 cut(s)	149
SetI	ASST	6 cut(s)	21, 61, 122, 135, 155, 182
SexAI	ACCWGGT	1 cut(s)	152
SinI	GGWCC	2 cut(s)	59, 156
SsiI	CCGC	2 cut(s)	64, 75
SspMI	CTAG	1 cut(s)	181
StyD4I	CCNGG	2 cut(s)	152, 158
TaaI	ACNGT	2 cut(s)	43, 70
TfiI	GAWTC	1 cut(s)	164
TseFI	GTSAC	1 cut(s)	115
TseI	GCWGC	1 cut(s)	19
Tsp45I	GTSAC	1 cut(s)	115
VpaK11BI	GGWCC	2 cut(s)	59, 156
XspI	CTAG	1 cut(s)	181

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.