Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0005075

Physical Location & Seq

Genomic Coordinates Forward (+)

30349542 .. 30355522

Gene Structure 5981 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00308710.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 924 bp

ATGTATAGCATCAAACAAGAAATGTTACATGCCCCGGGCACCGTCGAGAAAATCACAGGGCCTCGCACCGTCTCCGCTTTCAAAGAGAAAGGCGTCCTCAGCGTCTCCGAGTTTGTCACCGCCGGCGATAACCTCGTCTCCAAGTGCCCTACCTGGTCTTGGGAATCCGGAGAGCCAAGCAAGAGGAAGCCATACCTACCATCTGAAAAGCAGTATTTGATTACTAGAAATGTCCCTTGTTTACGCAGGGCTGCTTGTGTGGAAGAGGAGTATGAAGCTGCAGGTTCGGAAGTTCTTATCGATAATGAAGATAATGATGGCTGGTTGGCAACACACGGGAAGCCAAAGGATAAAAGTAGTGAGGAGGAAAACTTTCCTTCCATTGAAAGTTTAGAAATCAGCAAGGTGAGGTCGGCCCCCTCGCAAGTTGGGGGTGAAGGTGAAGATGAAGATGATATCCCTGACATGGCTGATTATGAAGAAGCTGACAACATTGAAATAGATCCTGGAACATATCTTGTTGCTCATGAACCTGATGATGACAATATATTACGGACCCGGACATATGATGTCAGCATTACGTATGATAAATATTACCAAACTCCTCGGGTGTGGCTTACTGGCTATGATGAGTCAAGGATGCTTTTACAAGCAGAGCTTGTACTTGAAGATGTCAGTCAGGATCATGCACGCAAAACTGTAACTATTGAGGATCATCCTCACTTGCCCGGAAAGCATGCATCTGTCCATCCATGCCGACATGGGGCTGTGATGAAGAAAATAATTGATGTACTAATGTCACGTGGAGTGGAACCGGAAGTCGATAAGTACCTCTTCTTATTCTTGAAATTTGTTGCGTCTGTGATTCCAACCATCGAATATGACTATACGATGGACTTTGATCTTGGCAGCTCCAGCAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000045 GO:0000151 GO:0000153 GO:0000422 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006914 GO:0006996 GO:0007005 GO:0007033 GO:0008150 GO:0008152 GO:0009056 GO:0009987 GO:0016043 GO:0016236 GO:0016740 GO:0019776 GO:0022411 GO:0022607 GO:0032991 GO:0044085 GO:0044237 GO:0044248 GO:0044424 GO:0044444 GO:0044464 GO:0044804 GO:0061726 GO:0061919 GO:0070925 GO:0071840 GO:1902494 GO:1903008 GO:1905037 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko04136 ko04138 ko04140 ko05167 map04136 map04138 map04140 map05167

Pfam Domains

Protein Families

Autophagy_C Autophagy_N Autophagy_act_C

Protein Analysis

307

Amino Acids

34.57

Weight (kDa)

4.66

Isoelectric Point (pI)

54.2

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Autophagy_act_C	PF03987	37 - 296	2e-59	Autophagocytosis associated protein, active-site domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005075)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G61500 AT5G61500
fragaria_vesca	FvH4_7g09530 FvH4_7g09530 FvH4_7g09530 FvH4_7g09530
malus_domestica	MD02G1218100.v1.1 MD07G1099000.v1.1 MD07G1099100.v1.1
prunus_persica	Prupe.2G123000_v2.0.a1 Prupe.2G123000_v2.0.a1 Prupe.2G123000_v2.0.a1
pyrus_communis	pycom1310g00040
rosa_chinensis	RchiOBHm_Chr1g0346321 RchiOBHm_Chr4g0385331
rosa_laevigata	RLG00000028805
rosa_multiflora	Rmu_co8505273.1_g000001 Rmu_sc0003363.1_g000042 Rmu_sc0003522.1_g000055
rosa_roxburghii	Rroxscaffold_4G00308710
rosa_rugosa	Rorug01G0179200 Rorug01G0179300 Rorug01G0179400 Rorug02G0522300 Rorug04G0105900
rosa_samantha	Rh1AG198600 Rh1BG164600 Rh1CG183900 Rh1DG195300
rosa_wichuraiana	Rw1G016690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	272
AccB1I	GGYRCC	1 cut(s)	38
AccIII	TCCGGA	1 cut(s)	167
AciI	CCGC	2 cut(s)	75, 120
AclWI	GGATC	3 cut(s)	497, 690, 720
AcsI	RAATTY	1 cut(s)	848
AcvI	CACGTG	1 cut(s)	803
AcyI	GRCGYC	1 cut(s)	93
AfaI	GTAC	3 cut(s)	663, 792, 830
AfiI	CCNNNNNNNGG	3 cut(s)	159, 466, 763
AgsI	TTSAA	5 cut(s)	82, 386, 497, 668, 847
AjnI	CCWGG	2 cut(s)	152, 505
AluBI	AGCT	4 cut(s)	278, 485, 658, 912
AluI	AGCT	4 cut(s)	278, 485, 658, 912
Alw26I	GTCTC	3 cut(s)	76, 109, 142
AlwI	GGATC	3 cut(s)	497, 690, 720
Ama87I	CYCGRG	2 cut(s)	34, 606
Aor13HI	TCCGGA	1 cut(s)	167
AoxI	GGCC	2 cut(s)	59, 414
ApeKI	GCWGC	3 cut(s)	251, 278, 909
ApoI	RAATTY	1 cut(s)	848
Asp700I	GAANNNNTTC	1 cut(s)	372
AspS9I	GGNCC	3 cut(s)	59, 415, 555
AsuC2I	CCSGG	4 cut(s)	35, 36, 559, 729
AsuHPI	GGTGA	4 cut(s)	109, 418, 446, 452
AvaI	CYCGRG	2 cut(s)	34, 606
AvaII	GGWCC	1 cut(s)	555
BaeGI	GKGCMC	2 cut(s)	41, 149
BanI	GGYRCC	1 cut(s)	38
BbrPI	CACGTG	1 cut(s)	803
BbvCI	CCTCAGC	1 cut(s)	98
BbvI	GCAGC	2 cut(s)	238, 265
BccI	CCATC	5 cut(s)	208, 311, 756, 881, 886
BciT130I	CCWGG	2 cut(s)	154, 507
BcnI	CCSGG	4 cut(s)	35, 36, 559, 729
BcoDI	GTCTC	3 cut(s)	76, 109, 142
BfaI	CTAG	1 cut(s)	225
BfmI	CTRYAG	1 cut(s)	279
BfuAI	ACCTGC	1 cut(s)	272
BisI	GCNGC	3 cut(s)	252, 279, 910
BlsI	GCNGC	3 cut(s)	253, 280, 911
Bme1390I	CCNGG	6 cut(s)	35, 36, 154, 507, 559, 729
Bme18I	GGWCC	1 cut(s)	555
BmeT110I	CYCGRG	2 cut(s)	34, 606
BmgT120I	GGNCC	3 cut(s)	59, 415, 555
BmiI	GGNNCC	4 cut(s)	40, 417, 557, 813
BmrFI	CCNGG	6 cut(s)	35, 36, 154, 507, 559, 729
BmsI	GCATC	3 cut(s)	18, 630, 749
BpmI	CTGGAG	1 cut(s)	898
Bpu10I	CCTNAGC	1 cut(s)	98
BpuMI	CCSGG	4 cut(s)	35, 36, 559, 729
Bsa29I	ATCGAT	1 cut(s)	300
BsaAI	YACGTR	2 cut(s)	582, 803
BsaHI	GRCGYC	1 cut(s)	93
BsaJI	CCNNGG	3 cut(s)	33, 34, 605
BsaWI	WCCGGW	2 cut(s)	167, 814
BsaXI	ACNNNNNCTCC	2 cut(s)	122, 152
Bsc4I	CCNNNNNNNGG	3 cut(s)	159, 466, 763
Bse118I	RCCGGY	1 cut(s)	122
Bse1I	ACTGG	1 cut(s)	625
BseAI	TCCGGA	1 cut(s)	167
BseBI	CCWGG	2 cut(s)	154, 507
BseCI	ATCGAT	1 cut(s)	300
BseDI	CCNNGG	3 cut(s)	33, 34, 605
BseGI	GGATG	3 cut(s)	645, 715, 748
BseLI	CCNNNNNNNGG	3 cut(s)	159, 466, 763
BseMII	CTCAG	1 cut(s)	112
BseNI	ACTGG	1 cut(s)	625
BseRI	GAGGAG	3 cut(s)	281, 377, 594
BseSI	GKGCMC	2 cut(s)	41, 149
BseXI	GCAGC	2 cut(s)	238, 265
BshFI	GGCC	2 cut(s)	61, 416
BshNI	GGYRCC	1 cut(s)	38
BshVI	ATCGAT	1 cut(s)	300
BsiHKCI	CYCGRG	2 cut(s)	34, 606
BsiSI	CCGG	6 cut(s)	35, 123, 168, 559, 729, 815
BslFI	GGGAC	1 cut(s)	218
BslI	CCNNNNNNNGG	3 cut(s)	159, 466, 763
BsmAI	GTCTC	3 cut(s)	76, 109, 142
BsmBI	CGTCTC	3 cut(s)	76, 109, 142
BsmFI	GGGAC	1 cut(s)	218
BsnI	GGCC	2 cut(s)	61, 416
BsoBI	CYCGRG	2 cut(s)	34, 606
Bsp1286I	GDGCHC	2 cut(s)	41, 149
Bsp13I	TCCGGA	1 cut(s)	167
Bsp143I	GATC	4 cut(s)	502, 682, 712, 901
BspACI	CCGC	2 cut(s)	75, 120
BspANI	GGCC	2 cut(s)	61, 416
BspCNI	CTCAG	1 cut(s)	111
BspDI	ATCGAT	1 cut(s)	300
BspEI	TCCGGA	1 cut(s)	167
BspHI	TCATGA	1 cut(s)	526
BspLI	GGNNCC	4 cut(s)	40, 417, 557, 813
BspMAI	CTGCAG	1 cut(s)	283
BspMI	ACCTGC	1 cut(s)	272
BspPI	GGATC	3 cut(s)	497, 690, 720
BspT107I	GGYRCC	1 cut(s)	38
BsrFI	RCCGGY	1 cut(s)	122
BsrI	ACTGG	1 cut(s)	625
BssAI	RCCGGY	1 cut(s)	122
BssECI	CCNNGG	3 cut(s)	33, 34, 605
BssMI	GATC	4 cut(s)	502, 682, 712, 901
BssNI	GRCGYC	1 cut(s)	93
Bst2UI	CCWGG	2 cut(s)	154, 507
Bst4CI	ACNGT	3 cut(s)	43, 70, 700
Bst6I	CTCTTC	2 cut(s)	258, 839
BstACI	GRCGYC	1 cut(s)	93
BstBAI	YACGTR	2 cut(s)	582, 803
BstC8I	GCNNGC	3 cut(s)	124, 691, 738
BstDEI	CTNAG	1 cut(s)	98
BstF5I	GGATG	3 cut(s)	645, 715, 748
BstKTI	GATC	4 cut(s)	505, 685, 715, 904
BstMAI	GTCTC	3 cut(s)	76, 109, 142
BstMBI	GATC	4 cut(s)	502, 682, 712, 901
BstMWI	GCNNNNNNNGC	3 cut(s)	99, 733, 915
BstNI	CCWGG	2 cut(s)	154, 507
BstNSI	RCATGY	2 cut(s)	32, 740
BstSCI	CCNGG	6 cut(s)	33, 34, 152, 505, 557, 727
BstSFI	CTRYAG	1 cut(s)	279
BstSLI	GKGCMC	2 cut(s)	41, 149
BstSNI	TACGTA	1 cut(s)	582
BstV1I	GCAGC	2 cut(s)	238, 265
BstX2I	RGATCY	1 cut(s)	502
BstYI	RGATCY	1 cut(s)	502
Bsu15I	ATCGAT	1 cut(s)	300
BsuRI	GGCC	2 cut(s)	61, 416
BsuTUI	ATCGAT	1 cut(s)	300
BtsCI	GGATG	3 cut(s)	645, 715, 748
BveI	ACCTGC	1 cut(s)	272
Cac8I	GCNNGC	3 cut(s)	124, 691, 738
CciI	TCATGA	1 cut(s)	526
Cfr10I	RCCGGY	1 cut(s)	122
Cfr13I	GGNCC	3 cut(s)	59, 415, 555
Cfr9I	CCCGGG	1 cut(s)	34
ClaI	ATCGAT	1 cut(s)	300
CseI	GACGC	3 cut(s)	82, 91, 846
CsiI	ACCWGGT	1 cut(s)	152
Csp6I	GTAC	3 cut(s)	662, 791, 829
CviAII	CATG	7 cut(s)	29, 466, 527, 686, 737, 753, 761
CviQI	GTAC	3 cut(s)	662, 791, 829
DdeI	CTNAG	1 cut(s)	98
DpnI	GATC	4 cut(s)	504, 684, 714, 903
DpnII	GATC	4 cut(s)	502, 682, 712, 901
Eam1104I	CTCTTC	2 cut(s)	258, 839
EarI	CTCTTC	2 cut(s)	258, 839
Eco105I	TACGTA	1 cut(s)	582
Eco32I	GATATC	1 cut(s)	457
Eco47I	GGWCC	1 cut(s)	555
Eco72I	CACGTG	1 cut(s)	803
Eco88I	CYCGRG	2 cut(s)	34, 606
EcoO109I	RGGNCCY	1 cut(s)	59
EcoRII	CCWGG	2 cut(s)	152, 505
EcoRV	GATATC	1 cut(s)	457
EcoT22I	ATGCAT	1 cut(s)	742
Esp3I	CGTCTC	3 cut(s)	76, 109, 142
FaeI	CATG	7 cut(s)	32, 469, 530, 689, 740, 756, 764
FalI	AAGNNNNNCTT	4 cut(s)	642, 674, 818, 850
FaqI	GGGAC	1 cut(s)	218
FatI	CATG	7 cut(s)	28, 465, 526, 685, 736, 752, 760
FauNDI	CATATG	1 cut(s)	565
Fnu4HI	GCNGC	3 cut(s)	252, 279, 910
FokI	GGATG	3 cut(s)	652, 702, 735
Fsp4HI	GCNGC	3 cut(s)	252, 279, 910
FspBI	CTAG	1 cut(s)	225
GluI	GCNGC	3 cut(s)	252, 279, 910
GsuI	CTGGAG	1 cut(s)	898
HaeIII	GGCC	2 cut(s)	61, 416
HapII	CCGG	6 cut(s)	35, 123, 168, 559, 729, 815
HgaI	GACGC	3 cut(s)	82, 91, 846
Hin1I	GRCGYC	1 cut(s)	93
Hin1II	CATG	7 cut(s)	32, 469, 530, 689, 740, 756, 764
HinfI	GANTC	3 cut(s)	164, 632, 865
HpaII	CCGG	6 cut(s)	35, 123, 168, 559, 729, 815
HphI	GGTGA	4 cut(s)	109, 418, 446, 452
Hpy166II	GTNNAC	1 cut(s)	242
Hpy188I	TCNGA	3 cut(s)	109, 205, 289
Hpy188III	TCNNGA	5 cut(s)	46, 168, 527, 680, 844
Hpy8I	GTNNAC	1 cut(s)	242
Hpy99I	CGWCG	1 cut(s)	47
HpyAV	CCTTC	2 cut(s)	387, 431
HpyCH4III	ACNGT	3 cut(s)	43, 70, 700
HpyCH4IV	ACGT	2 cut(s)	581, 802
HpyCH4V	TGCA	3 cut(s)	281, 689, 740
HpyF10VI	GCNNNNNNNGC	3 cut(s)	99, 733, 915
HpyF3I	CTNAG	1 cut(s)	98
HpySE526I	ACGT	2 cut(s)	581, 802
Hsp92I	GRCGYC	1 cut(s)	93
Hsp92II	CATG	7 cut(s)	32, 469, 530, 689, 740, 756, 764
Kpn2I	TCCGGA	1 cut(s)	167
KroI	GCCGGC	1 cut(s)	122
KroNI	GCCGGC	1 cut(s)	124
Kzo9I	GATC	4 cut(s)	502, 682, 712, 901
LmnI	GCTCC	1 cut(s)	917
Lsp1109I	GCAGC	2 cut(s)	238, 265
LweI	GCATC	3 cut(s)	18, 630, 749
MabI	ACCWGGT	1 cut(s)	152
MaeI	CTAG	1 cut(s)	225
MaeII	ACGT	2 cut(s)	581, 802
MaeIII	GTNAC	4 cut(s)	24, 115, 700, 798
MalI	GATC	4 cut(s)	504, 684, 714, 903
MboI	GATC	4 cut(s)	502, 682, 712, 901
MboII	GAAGA	8 cut(s)	275, 320, 455, 461, 491, 680, 787, 826
MflI	RGATCY	1 cut(s)	502
MhlI	GDGCHC	2 cut(s)	41, 149
MluCI	AATT	2 cut(s)	783, 848
MlyI	GAGTC	1 cut(s)	641
MmeI	TCCRAC	1 cut(s)	893
Mph1103I	ATGCAT	1 cut(s)	742
MreI	CGCCGGCG	1 cut(s)	122
MroI	TCCGGA	1 cut(s)	167
MroNI	GCCGGC	1 cut(s)	122
MroXI	GAANNNNTTC	1 cut(s)	372
MspI	CCGG	6 cut(s)	35, 123, 168, 559, 729, 815
MspR9I	CCNGG	6 cut(s)	35, 36, 154, 507, 559, 729
MvaI	CCWGG	2 cut(s)	154, 507
MwoI	GCNNNNNNNGC	3 cut(s)	99, 733, 915
NaeI	GCCGGC	1 cut(s)	124
NciI	CCSGG	4 cut(s)	35, 36, 559, 729
NdeI	CATATG	1 cut(s)	565
NdeII	GATC	4 cut(s)	502, 682, 712, 901
NgoMIV	GCCGGC	1 cut(s)	122
NlaIII	CATG	7 cut(s)	32, 469, 530, 689, 740, 756, 764
NlaIV	GGNNCC	4 cut(s)	40, 417, 557, 813
NmuCI	GTSAC	2 cut(s)	115, 798
NsiI	ATGCAT	1 cut(s)	742
NspI	RCATGY	2 cut(s)	32, 740
PaeI	GCATGC	1 cut(s)	740
PagI	TCATGA	1 cut(s)	526
PdiI	GCCGGC	1 cut(s)	124
PdmI	GAANNNNTTC	1 cut(s)	372
PfeI	GAWTC	2 cut(s)	164, 865
PfoI	TCCNGGA	1 cut(s)	505
PkrI	GCNGC	3 cut(s)	253, 280, 911
PleI	GAGTC	1 cut(s)	640
PmaCI	CACGTG	1 cut(s)	803
PmlI	CACGTG	1 cut(s)	803
PpsI	GAGTC	1 cut(s)	640
Ppu21I	YACGTR	2 cut(s)	582, 803
Psp6I	CCWGG	2 cut(s)	152, 505
PspCI	CACGTG	1 cut(s)	803
PspGI	CCWGG	2 cut(s)	152, 505
PspN4I	GGNNCC	4 cut(s)	40, 417, 557, 813
PspPI	GGNCC	3 cut(s)	59, 415, 555
PstI	CTGCAG	1 cut(s)	283
PsuI	RGATCY	1 cut(s)	502
RsaI	GTAC	3 cut(s)	663, 792, 830
RsaNI	GTAC	3 cut(s)	662, 791, 829
SatI	GCNGC	3 cut(s)	252, 279, 910
Sau3AI	GATC	4 cut(s)	502, 682, 712, 901
Sau96I	GGNCC	3 cut(s)	59, 415, 555
SchI	GAGTC	1 cut(s)	641
ScrFI	CCNGG	6 cut(s)	35, 36, 154, 507, 559, 729
SduI	GDGCHC	2 cut(s)	41, 149
SexAI	ACCWGGT	1 cut(s)	152
SfaNI	GCATC	3 cut(s)	18, 630, 749
SfcI	CTRYAG	1 cut(s)	279
SgrAI	CRCCGGYG	1 cut(s)	122
SinI	GGWCC	1 cut(s)	555
SmaI	CCCGGG	1 cut(s)	36
SnaBI	TACGTA	1 cut(s)	582
SphI	GCATGC	1 cut(s)	740
Sse9I	AATT	2 cut(s)	783, 848
SsiI	CCGC	2 cut(s)	75, 120
SspI	AATATT	1 cut(s)	593
SspMI	CTAG	1 cut(s)	225
StyD4I	CCNGG	6 cut(s)	33, 34, 152, 505, 557, 727
TaaI	ACNGT	3 cut(s)	43, 70, 700
TaiI	ACGT	2 cut(s)	584, 805
TaqI	TCGA	4 cut(s)	45, 300, 822, 876
TasI	AATT	2 cut(s)	783, 848
TatI	WGTACW	2 cut(s)	661, 790
TfiI	GAWTC	2 cut(s)	164, 865
TseFI	GTSAC	2 cut(s)	115, 798
TseI	GCWGC	3 cut(s)	251, 278, 909
Tsp45I	GTSAC	2 cut(s)	115, 798
TspDTI	ATGAA	6 cut(s)	288, 321, 462, 492, 543, 788
TspGWI	ACGGA	1 cut(s)	568
TspMI	CCCGGG	1 cut(s)	34
VpaK11BI	GGWCC	1 cut(s)	555
XapI	RAATTY	1 cut(s)	848
XceI	RCATGY	2 cut(s)	32, 740
XmaI	CCCGGG	1 cut(s)	34
XmnI	GAANNNNTTC	1 cut(s)	372
XspI	CTAG	1 cut(s)	225
Zsp2I	ATGCAT	1 cut(s)	742

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.