Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

tig00001310

Orthogroup ID

OG0005075

Physical Location & Seq

Genomic Coordinates Reverse (-)

52250 .. 54185

Gene Structure 1936 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom1310g00040.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 456 bp

ATGGTTCTGTCACAGAAGCTGCACGAGGCGTTCAAAGGAACGGTGGAGAAAATCACAGGTCACCGCACGGTCTCCGCCTTCAAAGAAAAAGGCGTTCTCAGCGTCTCCGAGTTCGTCACAACAAGTGGTGAGGTGGAAAACTTACCCTCCATTGAAAGTTTAGAAATCAGCAAGAATAGGGATGTGAAATCAGTCCCCTCGCATGTTGGAGTGGAAGATGAAGATGATATTCCTGACATGGCTGACTTTGAAGAAGCGGACAACATTGAGATTGATCCTGTAAGTGTTTACTTGCTTATTGCTCATGAACCTGACGATGACAATATTTTACGAACCCGAACATATGATGTCAGTTGCTCACTTACAGATATGATAAATATTACCAGACTCCTCGAGTGTGGCTTACTGGGTATGATGAGGTTAGTTTCAGTAGCTAGCAATTTTTTTTTTTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000045 GO:0000151 GO:0000153 GO:0000422 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006914 GO:0006996 GO:0007005 GO:0007033 GO:0008150 GO:0008152 GO:0009056 GO:0009987 GO:0016043 GO:0016236 GO:0016740 GO:0019776 GO:0022411 GO:0022607 GO:0032991 GO:0044085 GO:0044237 GO:0044248 GO:0044424 GO:0044444 GO:0044464 GO:0044804 GO:0061726 GO:0061919 GO:0070925 GO:0071840 GO:1902494 GO:1903008 GO:1905037 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko04136 ko04138 ko04140 ko05167 map04136 map04138 map04140 map05167

Pfam Domains

Protein Families

Autophagy_C Autophagy_N Autophagy_act_C

Protein Analysis

152

Amino Acids

16.84

Weight (kDa)

4.46

Isoelectric Point (pI)

40.49

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005075)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G61500 AT5G61500
fragaria_vesca	FvH4_7g09530 FvH4_7g09530 FvH4_7g09530 FvH4_7g09530
malus_domestica	MD02G1218100.v1.1 MD07G1099000.v1.1 MD07G1099100.v1.1
prunus_persica	Prupe.2G123000_v2.0.a1 Prupe.2G123000_v2.0.a1 Prupe.2G123000_v2.0.a1
pyrus_communis	pycom1310g00040
rosa_chinensis	RchiOBHm_Chr1g0346321 RchiOBHm_Chr4g0385331
rosa_laevigata	RLG00000028805
rosa_multiflora	Rmu_co8505273.1_g000001 Rmu_sc0003363.1_g000042 Rmu_sc0003522.1_g000055
rosa_roxburghii	Rroxscaffold_4G00308710
rosa_rugosa	Rorug01G0179200 Rorug01G0179300 Rorug01G0179400 Rorug02G0522300 Rorug04G0105900
rosa_samantha	Rh1AG198600 Rh1BG164600 Rh1CG183900 Rh1DG195300
rosa_wichuraiana	Rw1G016690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	64, 75, 257
AclWI	GGATC	1 cut(s)	269
AgsI	TTSAA	4 cut(s)	34, 82, 155, 251
AluBI	AGCT	2 cut(s)	19, 434
AluI	AGCT	2 cut(s)	19, 434
Alw26I	GTCTC	2 cut(s)	76, 109
AlwI	GGATC	1 cut(s)	269
AlwNI	CAGNNNCTG	1 cut(s)	19
Ama87I	CYCGRG	1 cut(s)	392
ApeKI	GCWGC	1 cut(s)	19
AsuHPI	GGTGA	2 cut(s)	53, 140
AsuNHI	GCTAGC	1 cut(s)	434
AvaI	CYCGRG	1 cut(s)	392
BauI	CACGAG	1 cut(s)	23
BbvI	GCAGC	1 cut(s)	6
BcoDI	GTCTC	2 cut(s)	76, 109
BfaI	CTAG	1 cut(s)	435
BisI	GCNGC	1 cut(s)	20
BlsI	GCNGC	1 cut(s)	21
BmeT110I	CYCGRG	1 cut(s)	392
BmrI	ACTGGG	1 cut(s)	416
BmtI	GCTAGC	1 cut(s)	438
BmuI	ACTGGG	1 cut(s)	416
BsaI	GGTCTC	1 cut(s)	76
BsaXI	ACNNNNNCTCC	2 cut(s)	131, 161
Bse1I	ACTGG	1 cut(s)	411
BseGI	GGATG	1 cut(s)	187
BseMII	CTCAG	1 cut(s)	112
BseNI	ACTGG	1 cut(s)	411
BseRI	GAGGAG	1 cut(s)	380
BseXI	GCAGC	1 cut(s)	6
BsgI	GTGCAG	1 cut(s)	5
BsiHKCI	CYCGRG	1 cut(s)	392
BslFI	GGGAC	1 cut(s)	179
BsmAI	GTCTC	2 cut(s)	76, 109
BsmBI	CGTCTC	1 cut(s)	109
BsmFI	GGGAC	1 cut(s)	179
Bso31I	GGTCTC	1 cut(s)	76
BsoBI	CYCGRG	1 cut(s)	392
Bsp143I	GATC	1 cut(s)	274
BspACI	CCGC	3 cut(s)	64, 75, 257
BspCNI	CTCAG	1 cut(s)	111
BspHI	TCATGA	1 cut(s)	304
BspOI	GCTAGC	1 cut(s)	438
BspPI	GGATC	1 cut(s)	269
BspTNI	GGTCTC	1 cut(s)	76
BsrI	ACTGG	1 cut(s)	411
BssMI	GATC	1 cut(s)	274
BssSI	CACGAG	1 cut(s)	23
Bst2BI	CACGAG	1 cut(s)	23
Bst4CI	ACNGT	2 cut(s)	43, 70
BstC8I	GCNNGC	1 cut(s)	436
BstDEI	CTNAG	1 cut(s)	98
BstEII	GGTNACC	1 cut(s)	59
BstF5I	GGATG	1 cut(s)	187
BstKTI	GATC	1 cut(s)	277
BstMAI	GTCTC	2 cut(s)	76, 109
BstMBI	GATC	1 cut(s)	274
BstMWI	GCNNNNNNNGC	1 cut(s)	99
BstNSI	RCATGY	1 cut(s)	206
BstPI	GGTNACC	1 cut(s)	59
BstV1I	GCAGC	1 cut(s)	6
BtsCI	GGATG	1 cut(s)	187
Cac8I	GCNNGC	1 cut(s)	436
CaiI	CAGNNNCTG	1 cut(s)	19
CciI	TCATGA	1 cut(s)	304
CseI	GACGC	1 cut(s)	91
CviAII	CATG	3 cut(s)	203, 238, 305
CviJI	RGCY	4 cut(s)	19, 242, 402, 434
CviKI_1	RGCY	4 cut(s)	19, 242, 402, 434
DdeI	CTNAG	1 cut(s)	98
DpnI	GATC	1 cut(s)	276
DpnII	GATC	1 cut(s)	274
EciI	GGCGGA	1 cut(s)	64
Eco31I	GGTCTC	1 cut(s)	76
Eco88I	CYCGRG	1 cut(s)	392
Eco91I	GGTNACC	1 cut(s)	59
EcoO65I	GGTNACC	1 cut(s)	59
Esp3I	CGTCTC	1 cut(s)	109
FaeI	CATG	3 cut(s)	206, 241, 308
FaiI	YATR	7 cut(s)	204, 239, 306, 343, 345, 371, 413
FaqI	GGGAC	1 cut(s)	179
FatI	CATG	3 cut(s)	202, 237, 304
FauNDI	CATATG	1 cut(s)	343
Fnu4HI	GCNGC	1 cut(s)	20
FokI	GGATG	1 cut(s)	194
Fsp4HI	GCNGC	1 cut(s)	20
FspBI	CTAG	1 cut(s)	435
GluI	GCNGC	1 cut(s)	20
HgaI	GACGC	1 cut(s)	91
Hin1II	CATG	3 cut(s)	206, 241, 308
HinfI	GANTC	1 cut(s)	387
HphI	GGTGA	2 cut(s)	53, 140
Hpy166II	GTNNAC	1 cut(s)	289
Hpy188I	TCNGA	1 cut(s)	109
Hpy188III	TCNNGA	2 cut(s)	233, 305
Hpy8I	GTNNAC	1 cut(s)	289
HpyAV	CCTTC	1 cut(s)	88
HpyCH4III	ACNGT	2 cut(s)	43, 70
HpyCH4V	TGCA	1 cut(s)	22
HpyF10VI	GCNNNNNNNGC	1 cut(s)	99
HpyF3I	CTNAG	1 cut(s)	98
Hsp92II	CATG	3 cut(s)	206, 241, 308
Kzo9I	GATC	1 cut(s)	274
LpnPI	CCDG	6 cut(s)	42, 246, 291, 324, 392, 397
Lsp1109I	GCAGC	1 cut(s)	6
MaeI	CTAG	1 cut(s)	435
MaeIII	GTNAC	3 cut(s)	9, 59, 115
MalI	GATC	1 cut(s)	276
MboI	GATC	1 cut(s)	274
MboII	GAAGA	3 cut(s)	227, 233, 263
MluCI	AATT	1 cut(s)	439
MlyI	GAGTC	1 cut(s)	381
MmeI	TCCRAC	1 cut(s)	187
MnlI	CCTC	6 cut(s)	19, 124, 157, 208, 401, 411
MwoI	GCNNNNNNNGC	1 cut(s)	99
NdeI	CATATG	1 cut(s)	343
NdeII	GATC	1 cut(s)	274
NheI	GCTAGC	1 cut(s)	434
NlaIII	CATG	3 cut(s)	206, 241, 308
NmuCI	GTSAC	3 cut(s)	9, 59, 115
NspI	RCATGY	1 cut(s)	206
PaeR7I	CTCGAG	1 cut(s)	392
PagI	TCATGA	1 cut(s)	304
PkrI	GCNGC	1 cut(s)	21
PleI	GAGTC	1 cut(s)	381
PpsI	GAGTC	1 cut(s)	381
PspEI	GGTNACC	1 cut(s)	59
PspXI	VCTCGAGB	1 cut(s)	392
PstNI	CAGNNNCTG	1 cut(s)	19
SatI	GCNGC	1 cut(s)	20
Sau3AI	GATC	1 cut(s)	274
SchI	GAGTC	1 cut(s)	381
SetI	ASST	6 cut(s)	21, 61, 135, 313, 422, 436
Sfr274I	CTCGAG	1 cut(s)	392
SlaI	CTCGAG	1 cut(s)	392
SmlI	CTYRAG	1 cut(s)	392
SmoI	CTYRAG	1 cut(s)	392
Sse9I	AATT	1 cut(s)	439
SsiI	CCGC	3 cut(s)	64, 75, 257
SspI	AATATT	2 cut(s)	325, 379
SspMI	CTAG	1 cut(s)	435
TaaI	ACNGT	2 cut(s)	43, 70
TaqI	TCGA	1 cut(s)	393
TasI	AATT	1 cut(s)	439
TseFI	GTSAC	3 cut(s)	9, 59, 115
TseI	GCWGC	1 cut(s)	19
Tsp45I	GTSAC	3 cut(s)	9, 59, 115
TspDTI	ATGAA	2 cut(s)	234, 321
XceI	RCATGY	1 cut(s)	206
XhoI	CTCGAG	1 cut(s)	392
XspI	CTAG	1 cut(s)	435

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.