Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr07

Orthogroup ID

OG0005075

Physical Location & Seq

Genomic Coordinates Forward (+)

10906769 .. 10924831

Gene Structure 18063 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD07G1099100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 582 bp

ATGGAGTATGAAGCTGCTGGTACGGAACTTCTTCTTGATAATGAAGATAATGATGGCTGGTTGGCAACCCATGGGAAGCCGAAGGATAGAAGTGGTGAGGAGGAAAACTTACCTGCCATTGAAAGTTTAGAAATCAGCAAGAATAGGGATGTGAAGTCAGTCCCCTCACATGTTGGAGCAGAAGATGAAGACGATATTCCTAACATGGCTGACTTTGAAGAAGCTGACAACATCGAATTTGACCCTGGAACATATCTTATTGCTCATGAACCTGACAATGACAATATTTTACGAACCCGAACATATGATGTTAGCATCACGTATGATAAATACTACCAGACTCCTCGAGTGTGGCTTACTGGGTATGATGAGTCAAGGATGCTTTTACAACCAGAGCTTGTACTTGAAGATGTCAGTCAAGATCATGCACGCAAAACTGTAACCATCGAGGATCATCCCCATTTGCCTGGAAAGCATGCATCTGTACATCCATGCCAACATGGGCCTGTGATGAAAAAAATTATTTATGTACTAATGTCACGCGGAGTGGAACCAGAAGTTGGTACCTGTTCTTATTCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000045 GO:0000151 GO:0000153 GO:0000422 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006914 GO:0006996 GO:0007005 GO:0007033 GO:0008150 GO:0008152 GO:0009056 GO:0009987 GO:0016043 GO:0016236 GO:0016740 GO:0019776 GO:0022411 GO:0022607 GO:0032991 GO:0044085 GO:0044237 GO:0044248 GO:0044424 GO:0044444 GO:0044464 GO:0044804 GO:0061726 GO:0061919 GO:0070925 GO:0071840 GO:1902494 GO:1903008 GO:1905037 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko04136 ko04138 ko04140 ko05167 map04136 map04138 map04140 map05167

Pfam Domains

Protein Families

Autophagy_C Autophagy_N Autophagy_act_C

Protein Analysis

194

Amino Acids

21.85

Weight (kDa)

4.53

Isoelectric Point (pI)

53.24

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Autophagy_act_C	PF03987	3 - 175	1.2e-33	Autophagocytosis associated protein, active-site domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005075)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G61500 AT5G61500
fragaria_vesca	FvH4_7g09530 FvH4_7g09530 FvH4_7g09530 FvH4_7g09530
malus_domestica	MD02G1218100.v1.1 MD07G1099000.v1.1 MD07G1099100.v1.1
prunus_persica	Prupe.2G123000_v2.0.a1 Prupe.2G123000_v2.0.a1 Prupe.2G123000_v2.0.a1
pyrus_communis	pycom1310g00040
rosa_chinensis	RchiOBHm_Chr1g0346321 RchiOBHm_Chr4g0385331
rosa_laevigata	RLG00000028805
rosa_multiflora	Rmu_co8505273.1_g000001 Rmu_sc0003363.1_g000042 Rmu_sc0003522.1_g000055
rosa_roxburghii	Rroxscaffold_4G00308710
rosa_rugosa	Rorug01G0179200 Rorug01G0179300 Rorug01G0179400 Rorug02G0522300 Rorug04G0105900
rosa_samantha	Rh1AG198600 Rh1BG164600 Rh1CG183900 Rh1DG195300
rosa_wichuraiana	Rw1G016690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	121
Acc65I	GGTACC	1 cut(s)	563
AccB1I	GGYRCC	1 cut(s)	563
AccB7I	CCANNNNNTGG	1 cut(s)	560
AccII	CGCG	1 cut(s)	543
AciI	CCGC	1 cut(s)	543
AclWI	GGATC	1 cut(s)	459
AcsI	RAATTY	1 cut(s)	236
AfaI	GTAC	5 cut(s)	22, 402, 486, 531, 565
AfiI	CCNNNNNNNGG	1 cut(s)	560
AflIII	ACRYGT	1 cut(s)	169
AgsI	TTSAA	3 cut(s)	122, 218, 407
AjnI	CCWGG	2 cut(s)	244, 466
AjuI	GAANNNNNNNTTGG	2 cut(s)	543, 575
AluBI	AGCT	3 cut(s)	14, 224, 397
AluI	AGCT	3 cut(s)	14, 224, 397
AlwI	GGATC	1 cut(s)	459
Ama87I	CYCGRG	1 cut(s)	345
AoxI	GGCC	1 cut(s)	503
ApeKI	GCWGC	1 cut(s)	14
ApoI	RAATTY	1 cut(s)	236
Asp700I	GAANNNNTTC	1 cut(s)	30
Asp718I	GGTACC	1 cut(s)	563
AspS9I	GGNCC	1 cut(s)	503
AsuHPI	GGTGA	1 cut(s)	107
AvaI	CYCGRG	1 cut(s)	345
BanI	GGYRCC	1 cut(s)	563
BbsI	GAAGAC	1 cut(s)	195
BccI	CCATC	2 cut(s)	47, 452
BciT130I	CCWGG	2 cut(s)	246, 468
BfuAI	ACCTGC	1 cut(s)	121
BisI	GCNGC	1 cut(s)	15
BlsI	GCNGC	1 cut(s)	16
Bme1390I	CCNGG	2 cut(s)	246, 468
BmeT110I	CYCGRG	1 cut(s)	345
BmgT120I	GGNCC	1 cut(s)	503
BmiI	GGNNCC	2 cut(s)	552, 565
BmrFI	CCNGG	2 cut(s)	246, 468
BmrI	ACTGGG	1 cut(s)	369
BmsI	GCATC	3 cut(s)	324, 369, 488
BmuI	ACTGGG	1 cut(s)	369
BpiI	GAAGAC	1 cut(s)	195
BsaAI	YACGTR	1 cut(s)	321
BsaJI	CCNNGG	2 cut(s)	70, 244
Bsc4I	CCNNNNNNNGG	1 cut(s)	560
Bse1I	ACTGG	1 cut(s)	364
BseBI	CCWGG	2 cut(s)	246, 468
BseDI	CCNNGG	2 cut(s)	70, 244
BseGI	GGATG	4 cut(s)	154, 384, 454, 487
BseLI	CCNNNNNNNGG	1 cut(s)	560
BseNI	ACTGG	1 cut(s)	364
BseRI	GAGGAG	2 cut(s)	113, 333
Bsh1236I	CGCG	1 cut(s)	543
BshFI	GGCC	1 cut(s)	505
BshNI	GGYRCC	1 cut(s)	563
BsiHKCI	CYCGRG	1 cut(s)	345
BslFI	GGGAC	1 cut(s)	146
BslI	CCNNNNNNNGG	1 cut(s)	560
BsmFI	GGGAC	1 cut(s)	146
BsnI	GGCC	1 cut(s)	505
BsoBI	CYCGRG	1 cut(s)	345
Bsp1407I	TGTACA	1 cut(s)	484
Bsp143I	GATC	2 cut(s)	421, 451
Bsp19I	CCATGG	1 cut(s)	70
BspACI	CCGC	1 cut(s)	543
BspANI	GGCC	1 cut(s)	505
BspFNI	CGCG	1 cut(s)	543
BspHI	TCATGA	1 cut(s)	265
BspLI	GGNNCC	2 cut(s)	552, 565
BspMI	ACCTGC	1 cut(s)	121
BspPI	GGATC	1 cut(s)	459
BspT107I	GGYRCC	1 cut(s)	563
BsrGI	TGTACA	1 cut(s)	484
BsrI	ACTGG	1 cut(s)	364
BssECI	CCNNGG	2 cut(s)	70, 244
BssMI	GATC	2 cut(s)	421, 451
BssT1I	CCWWGG	1 cut(s)	70
Bst2UI	CCWGG	2 cut(s)	246, 468
Bst4CI	ACNGT	1 cut(s)	439
BstAUI	TGTACA	1 cut(s)	484
BstBAI	YACGTR	1 cut(s)	321
BstC8I	GCNNGC	2 cut(s)	430, 477
BstDSI	CCRYGG	1 cut(s)	70
BstF5I	GGATG	4 cut(s)	154, 384, 454, 487
BstFNI	CGCG	1 cut(s)	543
BstKTI	GATC	2 cut(s)	424, 454
BstMBI	GATC	2 cut(s)	421, 451
BstMWI	GCNNNNNNNGC	1 cut(s)	472
BstNI	CCWGG	2 cut(s)	246, 468
BstNSI	RCATGY	2 cut(s)	173, 479
BstSCI	CCNGG	2 cut(s)	244, 466
BstUI	CGCG	1 cut(s)	543
BstV2I	GAAGAC	1 cut(s)	195
BstXI	CCANNNNNNTGG	1 cut(s)	467
BsuRI	GGCC	1 cut(s)	505
BtgI	CCRYGG	1 cut(s)	70
BtsCI	GGATG	4 cut(s)	154, 384, 454, 487
BveI	ACCTGC	1 cut(s)	121
Cac8I	GCNNGC	2 cut(s)	430, 477
CciI	TCATGA	1 cut(s)	265
Cfr13I	GGNCC	1 cut(s)	503
Csp6I	GTAC	5 cut(s)	21, 401, 485, 530, 564
CviAII	CATG	8 cut(s)	71, 170, 205, 266, 425, 476, 492, 500
CviJI	RGCY	8 cut(s)	14, 57, 79, 209, 224, 355, 397, 505
CviKI_1	RGCY	8 cut(s)	14, 57, 79, 209, 224, 355, 397, 505
CviQI	GTAC	5 cut(s)	21, 401, 485, 530, 564
DpnI	GATC	2 cut(s)	423, 453
DpnII	GATC	2 cut(s)	421, 451
Eco130I	CCWWGG	1 cut(s)	70
Eco88I	CYCGRG	1 cut(s)	345
EcoRII	CCWGG	2 cut(s)	244, 466
EcoT14I	CCWWGG	1 cut(s)	70
EcoT22I	ATGCAT	1 cut(s)	481
ErhI	CCWWGG	1 cut(s)	70
FaeI	CATG	8 cut(s)	74, 173, 208, 269, 428, 479, 495, 503
FaqI	GGGAC	1 cut(s)	146
FatI	CATG	8 cut(s)	70, 169, 204, 265, 424, 475, 491, 499
FauNDI	CATATG	1 cut(s)	304
Fnu4HI	GCNGC	1 cut(s)	15
FokI	GGATG	4 cut(s)	161, 391, 441, 474
Fsp4HI	GCNGC	1 cut(s)	15
GluI	GCNGC	1 cut(s)	15
HaeIII	GGCC	1 cut(s)	505
Hin1II	CATG	8 cut(s)	74, 173, 208, 269, 428, 479, 495, 503
HinfI	GANTC	2 cut(s)	340, 371
HphI	GGTGA	1 cut(s)	107
Hpy188III	TCNNGA	4 cut(s)	35, 266, 419, 579
HpyAV	CCTTC	1 cut(s)	76
HpyCH4III	ACNGT	1 cut(s)	439
HpyCH4IV	ACGT	1 cut(s)	320
HpyCH4V	TGCA	2 cut(s)	428, 479
HpyF10VI	GCNNNNNNNGC	1 cut(s)	472
HpySE526I	ACGT	1 cut(s)	320
Hsp92II	CATG	8 cut(s)	74, 173, 208, 269, 428, 479, 495, 503
KpnI	GGTACC	1 cut(s)	567
Kzo9I	GATC	2 cut(s)	421, 451
LmnI	GCTCC	1 cut(s)	176
LweI	GCATC	3 cut(s)	324, 369, 488
MaeII	ACGT	1 cut(s)	320
MaeIII	GTNAC	2 cut(s)	439, 537
MalI	GATC	2 cut(s)	423, 453
MboI	GATC	2 cut(s)	421, 451
MboII	GAAGA	6 cut(s)	23, 56, 194, 200, 230, 419
MluCI	AATT	2 cut(s)	236, 519
MlyI	GAGTC	2 cut(s)	334, 380
MmeI	TCCRAC	1 cut(s)	154
MnlI	CCTC	5 cut(s)	91, 94, 175, 354, 442
Mph1103I	ATGCAT	1 cut(s)	481
MroXI	GAANNNNTTC	1 cut(s)	30
MspR9I	CCNGG	2 cut(s)	246, 468
MvaI	CCWGG	2 cut(s)	246, 468
MvnI	CGCG	1 cut(s)	543
MwoI	GCNNNNNNNGC	1 cut(s)	472
NcoI	CCATGG	1 cut(s)	70
NdeI	CATATG	1 cut(s)	304
NdeII	GATC	2 cut(s)	421, 451
NlaIII	CATG	8 cut(s)	74, 173, 208, 269, 428, 479, 495, 503
NlaIV	GGNNCC	2 cut(s)	552, 565
NmuCI	GTSAC	1 cut(s)	537
NsiI	ATGCAT	1 cut(s)	481
NspI	RCATGY	2 cut(s)	173, 479
PaeI	GCATGC	1 cut(s)	479
PaeR7I	CTCGAG	1 cut(s)	345
PagI	TCATGA	1 cut(s)	265
PciI	ACATGT	1 cut(s)	169
PdmI	GAANNNNTTC	1 cut(s)	30
PflMI	CCANNNNNTGG	1 cut(s)	560
PkrI	GCNGC	1 cut(s)	16
PleI	GAGTC	2 cut(s)	334, 379
PpsI	GAGTC	2 cut(s)	334, 379
Ppu21I	YACGTR	1 cut(s)	321
PscI	ACATGT	1 cut(s)	169
Psp6I	CCWGG	2 cut(s)	244, 466
PspGI	CCWGG	2 cut(s)	244, 466
PspN4I	GGNNCC	2 cut(s)	552, 565
PspPI	GGNCC	1 cut(s)	503
PspXI	VCTCGAGB	1 cut(s)	345
RsaI	GTAC	5 cut(s)	22, 402, 486, 531, 565
RsaNI	GTAC	5 cut(s)	21, 401, 485, 530, 564
SatI	GCNGC	1 cut(s)	15
Sau3AI	GATC	2 cut(s)	421, 451
Sau96I	GGNCC	1 cut(s)	503
SchI	GAGTC	2 cut(s)	334, 380
ScrFI	CCNGG	2 cut(s)	246, 468
SetI	ASST	7 cut(s)	16, 115, 226, 274, 323, 399, 569
SfaNI	GCATC	3 cut(s)	324, 369, 488
Sfr274I	CTCGAG	1 cut(s)	345
SlaI	CTCGAG	1 cut(s)	345
SmlI	CTYRAG	1 cut(s)	345
SmoI	CTYRAG	1 cut(s)	345
SphI	GCATGC	1 cut(s)	479
Sse9I	AATT	2 cut(s)	236, 519
SsiI	CCGC	1 cut(s)	543
SspI	AATATT	1 cut(s)	286
StyD4I	CCNGG	2 cut(s)	244, 466
StyI	CCWWGG	1 cut(s)	70
TaaI	ACNGT	1 cut(s)	439
TaiI	ACGT	1 cut(s)	323
TaqI	TCGA	3 cut(s)	234, 346, 447
TasI	AATT	2 cut(s)	236, 519
TatI	WGTACW	3 cut(s)	400, 484, 529
TseFI	GTSAC	1 cut(s)	537
TseI	GCWGC	1 cut(s)	14
Tsp45I	GTSAC	1 cut(s)	537
TspDTI	ATGAA	5 cut(s)	24, 57, 201, 282, 527
TspGWI	ACGGA	1 cut(s)	38
Van91I	CCANNNNNTGG	1 cut(s)	560
XapI	RAATTY	1 cut(s)	236
XceI	RCATGY	2 cut(s)	173, 479
XhoI	CTCGAG	1 cut(s)	345
XmnI	GAANNNNTTC	1 cut(s)	30
Zsp2I	ATGCAT	1 cut(s)	481

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.