Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0005075

Physical Location & Seq

Genomic Coordinates Reverse (-)

17949178 .. 17955184

Gene Structure 6007 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G123000.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 927 bp

ATGGTTCTGTCGCAGAAGCTTCACGAGGCCTTCAAAGGGACCGTAGAGAAAATCACAGGGCCTCGTACGGTCTCCGCCTTTAAAGAAAAGGGTGTTCTCAGCGTCACCGAGTTCGTCACTGCTGGTGATAACCTCGTCTCCAAGTGCCCCACCTGGTCTTGGGAATCAGGTGAGCCAAGCAAGAGGAAGCCATACTTACCACCAGAAAAGCAGTATTTGATTACTAGAAATGTCCCTTGCTTACGGAGGGCTGCATCTATTGAAGAGGAGTATGAAGCTGCTGGTATGGAAGTTCTTCTTGATAATGAAGATAATGATGGCTGGTTGGCAACCCATGGGAAGCCAAAGGATAGAAGTTGCGAGGAGGAAAACTTACCCTCCATTGAAAGTTTAGAAATCAGCAAGAATAAGGCTGTGAAGTTGGCCCCTTCACATGTTGGAGGGGAAGATGAAGACGATATTCCTGACATGGCTGACTATGAAGAAGCTGACAACATTGAAATAGATCCTGGAACTTATATTATTGCTCATGAACCTGAAGATGACAATATTTTACGAACACGAACCTATGATGTCAGCATTACGTATGATAAATATTACCAAACTCCTCGAGTGTGGCTTACTGGGTATGATGAGTCAAGGATGCTTTTACAAGCAGAGCTCGTACTTGAAGATGTCAGTCAAGATCATGCACGCAAAACTGTAACAATTGAGGACCATCCCCACTTGCCTGGAAAGCATGCATCCGTCCATCCATGCCGACATGGAGCTGTGATGAAAAAGATTATTGATGTACTTATGTCACGTGGAGTGGAACCAGAAGTTGATAAGTACCTTTTCTTATTCTTGAAATTTGTTGCCTCTGTAATTCCAACTATTGAATATGACTATACGATGGACTTTGATCTTGGCAGCTCCAGCAGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000045 GO:0000151 GO:0000153 GO:0000422 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006914 GO:0006996 GO:0007005 GO:0007033 GO:0008150 GO:0008152 GO:0009056 GO:0009987 GO:0016043 GO:0016236 GO:0016740 GO:0019776 GO:0022411 GO:0022607 GO:0032991 GO:0044085 GO:0044237 GO:0044248 GO:0044424 GO:0044444 GO:0044464 GO:0044804 GO:0061726 GO:0061919 GO:0070925 GO:0071840 GO:1902494 GO:1903008 GO:1905037 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko04136 ko04138 ko04140 ko05167 map04136 map04138 map04140 map05167

Pfam Domains

Protein Families

Autophagy_C Autophagy_N Autophagy_act_C

Protein Analysis

309

Amino Acids

34.79

Weight (kDa)

4.8

Isoelectric Point (pI)

52.72

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005075)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G61500 AT5G61500
fragaria_vesca	FvH4_7g09530 FvH4_7g09530 FvH4_7g09530 FvH4_7g09530
malus_domestica	MD02G1218100.v1.1 MD07G1099000.v1.1 MD07G1099100.v1.1
prunus_persica	Prupe.2G123000_v2.0.a1 Prupe.2G123000_v2.0.a1 Prupe.2G123000_v2.0.a1
pyrus_communis	pycom1310g00040
rosa_chinensis	RchiOBHm_Chr1g0346321 RchiOBHm_Chr4g0385331
rosa_laevigata	RLG00000028805
rosa_multiflora	Rmu_co8505273.1_g000001 Rmu_sc0003363.1_g000042 Rmu_sc0003522.1_g000055
rosa_roxburghii	Rroxscaffold_4G00308710
rosa_rugosa	Rorug01G0179200 Rorug01G0179300 Rorug01G0179400 Rorug02G0522300 Rorug04G0105900
rosa_samantha	Rh1AG198600 Rh1BG164600 Rh1CG183900 Rh1DG195300
rosa_wichuraiana	Rw1G016690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	75
AclWI	GGATC	1 cut(s)	500
AcsI	RAATTY	1 cut(s)	851
AcuI	CTGAAG	1 cut(s)	558
AcvI	CACGTG	1 cut(s)	806
AfaI	GTAC	4 cut(s)	67, 666, 795, 833
AfiI	CCNNNNNNNGG	2 cut(s)	36, 159
AflIII	ACRYGT	1 cut(s)	433
AgsI	TTSAA	7 cut(s)	34, 263, 386, 500, 671, 850, 881
AjnI	CCWGG	3 cut(s)	152, 508, 730
AluBI	AGCT	6 cut(s)	19, 278, 488, 661, 770, 915
AluI	AGCT	6 cut(s)	19, 278, 488, 661, 770, 915
Alw21I	GWGCWC	1 cut(s)	663
Alw26I	GTCTC	2 cut(s)	76, 142
AlwI	GGATC	1 cut(s)	500
Ama87I	CYCGRG	1 cut(s)	609
AoxI	GGCC	3 cut(s)	27, 59, 423
ApeKI	GCWGC	3 cut(s)	251, 278, 912
ApoI	RAATTY	1 cut(s)	851
Asp700I	GAANNNNTTC	1 cut(s)	294
AspS9I	GGNCC	4 cut(s)	39, 59, 424, 715
AsuHPI	GGTGA	3 cut(s)	97, 137, 182
AvaI	CYCGRG	1 cut(s)	609
AvaII	GGWCC	2 cut(s)	39, 715
BaeGI	GKGCMC	1 cut(s)	149
BanII	GRGCYC	1 cut(s)	663
BauI	CACGAG	1 cut(s)	23
BbrPI	CACGTG	1 cut(s)	806
BbsI	GAAGAC	1 cut(s)	459
Bbv12I	GWGCWC	1 cut(s)	663
BbvI	GCAGC	2 cut(s)	238, 265
BccI	CCATC	4 cut(s)	311, 726, 759, 889
BciT130I	CCWGG	3 cut(s)	154, 510, 732
BcoDI	GTCTC	2 cut(s)	76, 142
BfaI	CTAG	1 cut(s)	225
BisI	GCNGC	3 cut(s)	252, 279, 913
BlsI	GCNGC	3 cut(s)	253, 280, 914
Bme1390I	CCNGG	3 cut(s)	154, 510, 732
Bme18I	GGWCC	2 cut(s)	39, 715
BmeT110I	CYCGRG	1 cut(s)	609
BmgT120I	GGNCC	4 cut(s)	39, 59, 424, 715
BmiI	GGNNCC	3 cut(s)	40, 426, 816
BmrFI	CCNGG	3 cut(s)	154, 510, 732
BmrI	ACTGGG	1 cut(s)	633
BmsI	GCATC	3 cut(s)	263, 633, 752
BmuI	ACTGGG	1 cut(s)	633
BpiI	GAAGAC	1 cut(s)	459
BpmI	CTGGAG	1 cut(s)	901
BsaAI	YACGTR	2 cut(s)	585, 806
BsaI	GGTCTC	1 cut(s)	76
BsaJI	CCNNGG	1 cut(s)	334
BsaXI	ACNNNNNCTCC	4 cut(s)	122, 152, 362, 392
Bsc4I	CCNNNNNNNGG	2 cut(s)	36, 159
Bse1I	ACTGG	1 cut(s)	628
BseBI	CCWGG	3 cut(s)	154, 510, 732
BseDI	CCNNGG	1 cut(s)	334
BseGI	GGATG	4 cut(s)	648, 718, 743, 751
BseLI	CCNNNNNNNGG	2 cut(s)	36, 159
BseMII	CTCAG	1 cut(s)	112
BseNI	ACTGG	1 cut(s)	628
BseRI	GAGGAG	3 cut(s)	281, 377, 597
BseSI	GKGCMC	1 cut(s)	149
BseXI	GCAGC	2 cut(s)	238, 265
BshFI	GGCC	3 cut(s)	29, 61, 425
BsiHKAI	GWGCWC	1 cut(s)	663
BsiHKCI	CYCGRG	1 cut(s)	609
BsiWI	CGTACG	1 cut(s)	65
BslFI	GGGAC	2 cut(s)	52, 218
BslI	CCNNNNNNNGG	2 cut(s)	36, 159
BsmAI	GTCTC	2 cut(s)	76, 142
BsmBI	CGTCTC	1 cut(s)	142
BsmFI	GGGAC	2 cut(s)	52, 218
BsnI	GGCC	3 cut(s)	29, 61, 425
Bso31I	GGTCTC	1 cut(s)	76
BsoBI	CYCGRG	1 cut(s)	609
Bsp1286I	GDGCHC	2 cut(s)	149, 663
Bsp143I	GATC	3 cut(s)	505, 685, 904
Bsp19I	CCATGG	1 cut(s)	334
BspACI	CCGC	1 cut(s)	75
BspANI	GGCC	3 cut(s)	29, 61, 425
BspCNI	CTCAG	1 cut(s)	111
BspHI	TCATGA	1 cut(s)	529
BspLI	GGNNCC	3 cut(s)	40, 426, 816
BspPI	GGATC	1 cut(s)	500
BspTNI	GGTCTC	1 cut(s)	76
BsrI	ACTGG	1 cut(s)	628
BssECI	CCNNGG	1 cut(s)	334
BssMI	GATC	3 cut(s)	505, 685, 904
BssSI	CACGAG	1 cut(s)	23
BssT1I	CCWWGG	1 cut(s)	334
Bst2BI	CACGAG	1 cut(s)	23
Bst2UI	CCWGG	3 cut(s)	154, 510, 732
Bst4CI	ACNGT	3 cut(s)	43, 70, 703
Bst6I	CTCTTC	1 cut(s)	258
BstBAI	YACGTR	2 cut(s)	585, 806
BstC8I	GCNNGC	2 cut(s)	694, 741
BstDEI	CTNAG	1 cut(s)	98
BstDSI	CCRYGG	1 cut(s)	334
BstF5I	GGATG	4 cut(s)	648, 718, 743, 751
BstKTI	GATC	3 cut(s)	508, 688, 907
BstMAI	GTCTC	2 cut(s)	76, 142
BstMBI	GATC	3 cut(s)	505, 685, 904
BstMWI	GCNNNNNNNGC	2 cut(s)	736, 918
BstNI	CCWGG	3 cut(s)	154, 510, 732
BstNSI	RCATGY	2 cut(s)	437, 743
BstSCI	CCNGG	3 cut(s)	152, 508, 730
BstSLI	GKGCMC	1 cut(s)	149
BstSNI	TACGTA	1 cut(s)	585
BstV1I	GCAGC	2 cut(s)	238, 265
BstV2I	GAAGAC	1 cut(s)	459
BstX2I	RGATCY	1 cut(s)	505
BstXI	CCANNNNNNTGG	1 cut(s)	731
BstYI	RGATCY	1 cut(s)	505
BsuRI	GGCC	3 cut(s)	29, 61, 425
BtgI	CCRYGG	1 cut(s)	334
BtsCI	GGATG	4 cut(s)	648, 718, 743, 751
BtsI	GCAGTG	1 cut(s)	117
BtsIMutI	CAGTG	1 cut(s)	117
Cac8I	GCNNGC	2 cut(s)	694, 741
CciI	TCATGA	1 cut(s)	529
Cfr13I	GGNCC	4 cut(s)	39, 59, 424, 715
CseI	GACGC	1 cut(s)	91
CsiI	ACCWGGT	1 cut(s)	152
Csp6I	GTAC	4 cut(s)	66, 665, 794, 832
CviAII	CATG	8 cut(s)	335, 434, 469, 530, 689, 740, 756, 764
CviQI	GTAC	4 cut(s)	66, 665, 794, 832
DdeI	CTNAG	1 cut(s)	98
DpnI	GATC	3 cut(s)	507, 687, 906
DpnII	GATC	3 cut(s)	505, 685, 904
DraI	TTTAAA	1 cut(s)	82
Eam1104I	CTCTTC	1 cut(s)	258
EarI	CTCTTC	1 cut(s)	258
EciI	GGCGGA	1 cut(s)	64
Ecl136II	GAGCTC	1 cut(s)	661
Eco105I	TACGTA	1 cut(s)	585
Eco130I	CCWWGG	1 cut(s)	334
Eco147I	AGGCCT	1 cut(s)	29
Eco24I	GRGCYC	1 cut(s)	663
Eco31I	GGTCTC	1 cut(s)	76
Eco47I	GGWCC	2 cut(s)	39, 715
Eco53kI	GAGCTC	1 cut(s)	661
Eco57I	CTGAAG	1 cut(s)	558
Eco72I	CACGTG	1 cut(s)	806
Eco88I	CYCGRG	1 cut(s)	609
EcoICRI	GAGCTC	1 cut(s)	661
EcoO109I	RGGNCCY	1 cut(s)	59
EcoRII	CCWGG	3 cut(s)	152, 508, 730
EcoT14I	CCWWGG	1 cut(s)	334
EcoT22I	ATGCAT	1 cut(s)	745
EcoT38I	GRGCYC	1 cut(s)	663
ErhI	CCWWGG	1 cut(s)	334
Esp3I	CGTCTC	1 cut(s)	142
FaeI	CATG	8 cut(s)	338, 437, 472, 533, 692, 743, 759, 767
FalI	AAGNNNNNCTT	4 cut(s)	179, 211, 282, 314
FaqI	GGGAC	2 cut(s)	52, 218
FatI	CATG	8 cut(s)	334, 433, 468, 529, 688, 739, 755, 763
Fnu4HI	GCNGC	3 cut(s)	252, 279, 913
FokI	GGATG	4 cut(s)	655, 705, 730, 738
FriOI	GRGCYC	1 cut(s)	663
Fsp4HI	GCNGC	3 cut(s)	252, 279, 913
FspBI	CTAG	1 cut(s)	225
GluI	GCNGC	3 cut(s)	252, 279, 913
GsuI	CTGGAG	1 cut(s)	901
HaeIII	GGCC	3 cut(s)	29, 61, 425
HgaI	GACGC	1 cut(s)	91
Hin1II	CATG	8 cut(s)	338, 437, 472, 533, 692, 743, 759, 767
HindIII	AAGCTT	1 cut(s)	17
HinfI	GANTC	2 cut(s)	164, 635
HphI	GGTGA	3 cut(s)	97, 137, 182
Hpy188III	TCNNGA	6 cut(s)	23, 299, 464, 530, 683, 847
HpyAV	CCTTC	2 cut(s)	40, 438
HpyCH4III	ACNGT	3 cut(s)	43, 70, 703
HpyCH4IV	ACGT	2 cut(s)	584, 805
HpyCH4V	TGCA	3 cut(s)	254, 692, 743
HpyF10VI	GCNNNNNNNGC	2 cut(s)	736, 918
HpyF3I	CTNAG	1 cut(s)	98
HpySE526I	ACGT	2 cut(s)	584, 805
Hsp92II	CATG	8 cut(s)	338, 437, 472, 533, 692, 743, 759, 767
Kzo9I	GATC	3 cut(s)	505, 685, 904
LmnI	GCTCC	2 cut(s)	767, 920
Lsp1109I	GCAGC	2 cut(s)	238, 265
LweI	GCATC	3 cut(s)	263, 633, 752
MabI	ACCWGGT	1 cut(s)	152
MaeI	CTAG	1 cut(s)	225
MaeII	ACGT	2 cut(s)	584, 805
MaeIII	GTNAC	4 cut(s)	103, 115, 703, 801
MalI	GATC	3 cut(s)	507, 687, 906
MboI	GATC	3 cut(s)	505, 685, 904
MboII	GAAGA	8 cut(s)	275, 287, 320, 458, 464, 494, 551, 683
MfeI	CAATTG	1 cut(s)	708
MflI	RGATCY	1 cut(s)	505
MhlI	GDGCHC	2 cut(s)	149, 663
MluCI	AATT	3 cut(s)	708, 851, 867
MlyI	GAGTC	1 cut(s)	644
MmeI	TCCRAC	2 cut(s)	418, 896
Mph1103I	ATGCAT	1 cut(s)	745
MroXI	GAANNNNTTC	1 cut(s)	294
MseI	TTAA	1 cut(s)	81
MspR9I	CCNGG	3 cut(s)	154, 510, 732
MunI	CAATTG	1 cut(s)	708
MvaI	CCWGG	3 cut(s)	154, 510, 732
MwoI	GCNNNNNNNGC	2 cut(s)	736, 918
NcoI	CCATGG	1 cut(s)	334
NdeII	GATC	3 cut(s)	505, 685, 904
NlaIII	CATG	8 cut(s)	338, 437, 472, 533, 692, 743, 759, 767
NlaIV	GGNNCC	3 cut(s)	40, 426, 816
NmuCI	GTSAC	3 cut(s)	103, 115, 801
NsiI	ATGCAT	1 cut(s)	745
NspI	RCATGY	2 cut(s)	437, 743
PaeI	GCATGC	1 cut(s)	743
PaeR7I	CTCGAG	1 cut(s)	609
PagI	TCATGA	1 cut(s)	529
PceI	AGGCCT	1 cut(s)	29
PciI	ACATGT	1 cut(s)	433
PdmI	GAANNNNTTC	1 cut(s)	294
PfeI	GAWTC	1 cut(s)	164
Pfl23II	CGTACG	1 cut(s)	65
PfoI	TCCNGGA	1 cut(s)	508
PkrI	GCNGC	3 cut(s)	253, 280, 914
PleI	GAGTC	1 cut(s)	643
PmaCI	CACGTG	1 cut(s)	806
PmlI	CACGTG	1 cut(s)	806
PpsI	GAGTC	1 cut(s)	643
Ppu21I	YACGTR	2 cut(s)	585, 806
PscI	ACATGT	1 cut(s)	433
Psp124BI	GAGCTC	1 cut(s)	663
Psp6I	CCWGG	3 cut(s)	152, 508, 730
PspCI	CACGTG	1 cut(s)	806
PspGI	CCWGG	3 cut(s)	152, 508, 730
PspLI	CGTACG	1 cut(s)	65
PspN4I	GGNNCC	3 cut(s)	40, 426, 816
PspPI	GGNCC	4 cut(s)	39, 59, 424, 715
PspXI	VCTCGAGB	1 cut(s)	609
PsuI	RGATCY	1 cut(s)	505
RsaI	GTAC	4 cut(s)	67, 666, 795, 833
RsaNI	GTAC	4 cut(s)	66, 665, 794, 832
SacI	GAGCTC	1 cut(s)	663
SaqAI	TTAA	1 cut(s)	81
SatI	GCNGC	3 cut(s)	252, 279, 913
Sau3AI	GATC	3 cut(s)	505, 685, 904
Sau96I	GGNCC	4 cut(s)	39, 59, 424, 715
SchI	GAGTC	1 cut(s)	644
ScrFI	CCNGG	3 cut(s)	154, 510, 732
SduI	GDGCHC	2 cut(s)	149, 663
SexAI	ACCWGGT	1 cut(s)	152
SfaNI	GCATC	3 cut(s)	263, 633, 752
Sfr274I	CTCGAG	1 cut(s)	609
SinI	GGWCC	2 cut(s)	39, 715
SlaI	CTCGAG	1 cut(s)	609
SmlI	CTYRAG	1 cut(s)	609
SmoI	CTYRAG	1 cut(s)	609
SnaBI	TACGTA	1 cut(s)	585
SphI	GCATGC	1 cut(s)	743
Sse9I	AATT	3 cut(s)	708, 851, 867
SseBI	AGGCCT	1 cut(s)	29
SsiI	CCGC	1 cut(s)	75
SspI	AATATT	2 cut(s)	550, 596
SspMI	CTAG	1 cut(s)	225
SstI	GAGCTC	1 cut(s)	663
StuI	AGGCCT	1 cut(s)	29
StyD4I	CCNGG	3 cut(s)	152, 508, 730
StyI	CCWWGG	1 cut(s)	334
TaaI	ACNGT	3 cut(s)	43, 70, 703
TaiI	ACGT	2 cut(s)	587, 808
TaqI	TCGA	1 cut(s)	610
TasI	AATT	3 cut(s)	708, 851, 867
TatI	WGTACW	1 cut(s)	793
TfiI	GAWTC	1 cut(s)	164
Tru1I	TTAA	1 cut(s)	81
Tru9I	TTAA	1 cut(s)	81
TscAI	CASTG	1 cut(s)	124
TseFI	GTSAC	3 cut(s)	103, 115, 801
TseI	GCWGC	3 cut(s)	251, 278, 912
Tsp45I	GTSAC	3 cut(s)	103, 115, 801
TspDTI	ATGAA	6 cut(s)	288, 321, 465, 495, 546, 791
TspGWI	ACGGA	2 cut(s)	259, 736
TspRI	CASTG	1 cut(s)	124
VpaK11BI	GGWCC	2 cut(s)	39, 715
XapI	RAATTY	1 cut(s)	851
XceI	RCATGY	2 cut(s)	437, 743
XhoI	CTCGAG	1 cut(s)	609
XmnI	GAANNNNTTC	1 cut(s)	294
XspI	CTAG	1 cut(s)	225
Zsp2I	ATGCAT	1 cut(s)	745

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.