Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8505273.1

Orthogroup ID

OG0005075

Physical Location & Seq

Genomic Coordinates Reverse (-)

501 .. 3038

Gene Structure 2538 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8505273.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 366 bp

atggctgattatgaagaagctgacaacattgaaatagaccctggaacatatcttattgctcatgaacctgatgatgacaatattttacggacccggacatatgatgtcagcattacgtatgataaatattaccaaactcctcgggtgtggcttactggctatgatgagtcaagaatgcttttacaagcagagcttgtacttgaagatgtcagtcaagatcatgcacgcaaaactgtaactattgaggatcatcctcacttgcccggaaagcatgcatccgtccatccatgccgacatggggctgtgatgaagaaaataattgatgtactaatgtcacgtggagtggaaccggaagtcgataagtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000045 GO:0000151 GO:0000153 GO:0000422 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006914 GO:0006996 GO:0007005 GO:0007033 GO:0008150 GO:0008152 GO:0009056 GO:0009987 GO:0016043 GO:0016236 GO:0016740 GO:0019776 GO:0022411 GO:0022607 GO:0032991 GO:0044085 GO:0044237 GO:0044248 GO:0044424 GO:0044444 GO:0044464 GO:0044804 GO:0061726 GO:0061919 GO:0070925 GO:0071840 GO:1902494 GO:1903008 GO:1905037 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko04136 ko04138 ko04140 ko05167 map04136 map04138 map04140 map05167

Pfam Domains

Protein Families

Autophagy_C Autophagy_N Autophagy_act_C

Protein Analysis

121

Amino Acids

13.93

Weight (kDa)

4.88

Isoelectric Point (pI)

51.92

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005075)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G61500 AT5G61500
fragaria_vesca	FvH4_7g09530 FvH4_7g09530 FvH4_7g09530 FvH4_7g09530
malus_domestica	MD02G1218100.v1.1 MD07G1099000.v1.1 MD07G1099100.v1.1
prunus_persica	Prupe.2G123000_v2.0.a1 Prupe.2G123000_v2.0.a1 Prupe.2G123000_v2.0.a1
pyrus_communis	pycom1310g00040
rosa_chinensis	RchiOBHm_Chr1g0346321 RchiOBHm_Chr4g0385331
rosa_laevigata	RLG00000028805
rosa_multiflora	Rmu_co8505273.1_g000001 Rmu_sc0003363.1_g000042 Rmu_sc0003522.1_g000055
rosa_roxburghii	Rroxscaffold_4G00308710
rosa_rugosa	Rorug01G0179200 Rorug01G0179300 Rorug01G0179400 Rorug02G0522300 Rorug04G0105900
rosa_samantha	Rh1AG198600 Rh1BG164600 Rh1CG183900 Rh1DG195300
rosa_wichuraiana	Rw1G016690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	255
AcvI	CACGTG	1 cut(s)	338
AfaI	GTAC	2 cut(s)	198, 327
AfiI	CCNNNNNNNGG	1 cut(s)	298
AgsI	TTSAA	2 cut(s)	32, 203
AjnI	CCWGG	1 cut(s)	40
AluBI	AGCT	2 cut(s)	20, 193
AluI	AGCT	2 cut(s)	20, 193
AlwI	GGATC	1 cut(s)	255
Ama87I	CYCGRG	1 cut(s)	141
AspS9I	GGNCC	1 cut(s)	90
AsuC2I	CCSGG	2 cut(s)	94, 264
AvaI	CYCGRG	1 cut(s)	141
AvaII	GGWCC	1 cut(s)	90
BbrPI	CACGTG	1 cut(s)	338
BccI	CCATC	1 cut(s)	291
BciT130I	CCWGG	1 cut(s)	42
BcnI	CCSGG	2 cut(s)	94, 264
Bme1390I	CCNGG	3 cut(s)	42, 94, 264
Bme18I	GGWCC	1 cut(s)	90
BmeT110I	CYCGRG	1 cut(s)	141
BmgT120I	GGNCC	1 cut(s)	90
BmiI	GGNNCC	2 cut(s)	92, 348
BmrFI	CCNGG	3 cut(s)	42, 94, 264
BmsI	GCATC	1 cut(s)	284
BpuMI	CCSGG	2 cut(s)	94, 264
BsaAI	YACGTR	2 cut(s)	117, 338
BsaJI	CCNNGG	2 cut(s)	40, 140
BsaWI	WCCGGW	1 cut(s)	349
Bsc4I	CCNNNNNNNGG	1 cut(s)	298
Bse1I	ACTGG	1 cut(s)	160
BseBI	CCWGG	1 cut(s)	42
BseDI	CCNNGG	2 cut(s)	40, 140
BseGI	GGATG	3 cut(s)	250, 275, 283
BseLI	CCNNNNNNNGG	1 cut(s)	298
BseNI	ACTGG	1 cut(s)	160
BseRI	GAGGAG	1 cut(s)	129
BsiHKCI	CYCGRG	1 cut(s)	141
BsiSI	CCGG	3 cut(s)	94, 264, 350
BslI	CCNNNNNNNGG	1 cut(s)	298
BsmI	GAATGC	1 cut(s)	180
BsoBI	CYCGRG	1 cut(s)	141
Bsp143I	GATC	2 cut(s)	217, 247
BspHI	TCATGA	1 cut(s)	61
BspLI	GGNNCC	2 cut(s)	92, 348
BspPI	GGATC	1 cut(s)	255
BsrI	ACTGG	1 cut(s)	160
BssECI	CCNNGG	2 cut(s)	40, 140
BssMI	GATC	2 cut(s)	217, 247
Bst2UI	CCWGG	1 cut(s)	42
Bst4CI	ACNGT	1 cut(s)	235
BstBAI	YACGTR	2 cut(s)	117, 338
BstC8I	GCNNGC	2 cut(s)	226, 273
BstF5I	GGATG	3 cut(s)	250, 275, 283
BstKTI	GATC	2 cut(s)	220, 250
BstMBI	GATC	2 cut(s)	217, 247
BstMWI	GCNNNNNNNGC	1 cut(s)	268
BstNI	CCWGG	1 cut(s)	42
BstNSI	RCATGY	1 cut(s)	275
BstSCI	CCNGG	3 cut(s)	40, 92, 262
BstSNI	TACGTA	1 cut(s)	117
BtsCI	GGATG	3 cut(s)	250, 275, 283
Cac8I	GCNNGC	2 cut(s)	226, 273
CciI	TCATGA	1 cut(s)	61
Cfr13I	GGNCC	1 cut(s)	90
Csp6I	GTAC	2 cut(s)	197, 326
CviAII	CATG	5 cut(s)	62, 221, 272, 288, 296
CviJI	RGCY	6 cut(s)	5, 20, 151, 159, 193, 302
CviKI_1	RGCY	6 cut(s)	5, 20, 151, 159, 193, 302
CviQI	GTAC	2 cut(s)	197, 326
DpnI	GATC	2 cut(s)	219, 249
DpnII	GATC	2 cut(s)	217, 247
Eco105I	TACGTA	1 cut(s)	117
Eco47I	GGWCC	1 cut(s)	90
Eco72I	CACGTG	1 cut(s)	338
Eco88I	CYCGRG	1 cut(s)	141
EcoRII	CCWGG	1 cut(s)	40
EcoT22I	ATGCAT	1 cut(s)	277
FaeI	CATG	5 cut(s)	65, 224, 275, 291, 299
FalI	AAGNNNNNCTT	2 cut(s)	177, 209
FatI	CATG	5 cut(s)	61, 220, 271, 287, 295
FauNDI	CATATG	1 cut(s)	100
FokI	GGATG	3 cut(s)	237, 262, 270
HapII	CCGG	3 cut(s)	94, 264, 350
Hin1II	CATG	5 cut(s)	65, 224, 275, 291, 299
HinfI	GANTC	1 cut(s)	167
HpaII	CCGG	3 cut(s)	94, 264, 350
Hpy188III	TCNNGA	3 cut(s)	62, 171, 215
HpyCH4III	ACNGT	1 cut(s)	235
HpyCH4IV	ACGT	2 cut(s)	116, 337
HpyCH4V	TGCA	2 cut(s)	224, 275
HpyF10VI	GCNNNNNNNGC	1 cut(s)	268
HpySE526I	ACGT	2 cut(s)	116, 337
Hsp92II	CATG	5 cut(s)	65, 224, 275, 291, 299
Kzo9I	GATC	2 cut(s)	217, 247
LpnPI	CCDG	6 cut(s)	27, 54, 81, 107, 141, 277
LweI	GCATC	1 cut(s)	284
MaeII	ACGT	2 cut(s)	116, 337
MaeIII	GTNAC	2 cut(s)	235, 333
MalI	GATC	2 cut(s)	219, 249
MboI	GATC	2 cut(s)	217, 247
MboII	GAAGA	3 cut(s)	26, 215, 322
MluCI	AATT	1 cut(s)	318
MlyI	GAGTC	1 cut(s)	176
MnlI	CCTC	3 cut(s)	150, 238, 264
Mph1103I	ATGCAT	1 cut(s)	277
MspI	CCGG	3 cut(s)	94, 264, 350
MspR9I	CCNGG	3 cut(s)	42, 94, 264
Mva1269I	GAATGC	1 cut(s)	180
MvaI	CCWGG	1 cut(s)	42
MwoI	GCNNNNNNNGC	1 cut(s)	268
NciI	CCSGG	2 cut(s)	94, 264
NdeI	CATATG	1 cut(s)	100
NdeII	GATC	2 cut(s)	217, 247
NlaIII	CATG	5 cut(s)	65, 224, 275, 291, 299
NlaIV	GGNNCC	2 cut(s)	92, 348
NmuCI	GTSAC	1 cut(s)	333
NsiI	ATGCAT	1 cut(s)	277
NspI	RCATGY	1 cut(s)	275
PaeI	GCATGC	1 cut(s)	275
PagI	TCATGA	1 cut(s)	61
PctI	GAATGC	1 cut(s)	180
PleI	GAGTC	1 cut(s)	175
PmaCI	CACGTG	1 cut(s)	338
PmlI	CACGTG	1 cut(s)	338
PpsI	GAGTC	1 cut(s)	175
Ppu21I	YACGTR	2 cut(s)	117, 338
Psp6I	CCWGG	1 cut(s)	40
PspCI	CACGTG	1 cut(s)	338
PspGI	CCWGG	1 cut(s)	40
PspN4I	GGNNCC	2 cut(s)	92, 348
PspPI	GGNCC	1 cut(s)	90
RsaI	GTAC	2 cut(s)	198, 327
RsaNI	GTAC	2 cut(s)	197, 326
Sau3AI	GATC	2 cut(s)	217, 247
Sau96I	GGNCC	1 cut(s)	90
SchI	GAGTC	1 cut(s)	176
ScrFI	CCNGG	3 cut(s)	42, 94, 264
SetI	ASST	5 cut(s)	22, 70, 119, 195, 340
SfaNI	GCATC	1 cut(s)	284
SinI	GGWCC	1 cut(s)	90
SnaBI	TACGTA	1 cut(s)	117
SphI	GCATGC	1 cut(s)	275
Sse9I	AATT	1 cut(s)	318
SspI	AATATT	2 cut(s)	82, 128
StyD4I	CCNGG	3 cut(s)	40, 92, 262
TaaI	ACNGT	1 cut(s)	235
TaiI	ACGT	2 cut(s)	119, 340
TaqI	TCGA	1 cut(s)	357
TasI	AATT	1 cut(s)	318
TatI	WGTACW	2 cut(s)	196, 325
TseFI	GTSAC	1 cut(s)	333
Tsp45I	GTSAC	1 cut(s)	333
TspDTI	ATGAA	3 cut(s)	27, 78, 323
TspGWI	ACGGA	2 cut(s)	103, 268
VpaK11BI	GGWCC	1 cut(s)	90
XceI	RCATGY	1 cut(s)	275
Zsp2I	ATGCAT	1 cut(s)	277

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.