Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0005075

Physical Location & Seq

Genomic Coordinates Forward (+)

28310218 .. 28313917

Gene Structure 3700 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000028805

Sequence Viewer

CDS Protein Promoter (2k)

Length: 489 bp

ATGGAGGAGTATAATTATTCTTCTCCTGACACTTCTAAAAGCCATGAACACTTCTCATACCCAAACAGTCTGGGAACATATCTTGTTGCTCATGAACCTGATGATGACAATATATTACGGACCCGGACATATGATGTCAGCATTACGTATGATAAATATTACCAAACTCCTCGGGTGTGGCTTACTGGCTATGATGAGTCAAGGATGCTTTTACAAGCAGAGCTTGTACTTGAAGATGTCAGTCAGGATCATGCACGCAAAACTGTAACTATTGAGGATCATCCTCACTTGCCCGGAAAGCATGCATCTGTCCATCCATGCCGACATGGGGCTGTGATGAAGAAAATAATTGATGTACTAATGTCACGTGGAGTGGAACCGGAAGTCGATAAGTACCTCTTCTTATTCTTGAAATTTGTTGCCTCCGTGATTCCAACCATCGAATATGACTATACGATGGACTTTGATCTTGGCAGCTCCAGCAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000045 GO:0000151 GO:0000153 GO:0000422 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006914 GO:0006996 GO:0007005 GO:0007033 GO:0008150 GO:0008152 GO:0009056 GO:0009987 GO:0016043 GO:0016236 GO:0016740 GO:0019776 GO:0022411 GO:0022607 GO:0032991 GO:0044085 GO:0044237 GO:0044248 GO:0044424 GO:0044444 GO:0044464 GO:0044804 GO:0061726 GO:0061919 GO:0070925 GO:0071840 GO:1902494 GO:1903008 GO:1905037 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko04136 ko04138 ko04140 ko05167 map04136 map04138 map04140 map05167

Pfam Domains

Protein Families

Autophagy_C Autophagy_N Autophagy_act_C

Protein Analysis

163

Amino Acids

18.7

Weight (kDa)

5.12

Isoelectric Point (pI)

44.43

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Autophagy_act_C	PF03987	34 - 151	4.8e-42	Autophagocytosis associated protein, active-site domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0005075)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G61500 AT5G61500
fragaria_vesca	FvH4_7g09530 FvH4_7g09530 FvH4_7g09530 FvH4_7g09530
malus_domestica	MD02G1218100.v1.1 MD07G1099000.v1.1 MD07G1099100.v1.1
prunus_persica	Prupe.2G123000_v2.0.a1 Prupe.2G123000_v2.0.a1 Prupe.2G123000_v2.0.a1
pyrus_communis	pycom1310g00040
rosa_chinensis	RchiOBHm_Chr1g0346321 RchiOBHm_Chr4g0385331
rosa_laevigata	RLG00000028805
rosa_multiflora	Rmu_co8505273.1_g000001 Rmu_sc0003363.1_g000042 Rmu_sc0003522.1_g000055
rosa_roxburghii	Rroxscaffold_4G00308710
rosa_rugosa	Rorug01G0179200 Rorug01G0179300 Rorug01G0179400 Rorug02G0522300 Rorug04G0105900
rosa_samantha	Rh1AG198600 Rh1BG164600 Rh1CG183900 Rh1DG195300
rosa_wichuraiana	Rw1G016690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	255, 285
AcsI	RAATTY	1 cut(s)	413
AcvI	CACGTG	1 cut(s)	368
AfaI	GTAC	3 cut(s)	228, 357, 395
AfiI	CCNNNNNNNGG	1 cut(s)	328
AgsI	TTSAA	2 cut(s)	233, 412
AluBI	AGCT	2 cut(s)	223, 477
AluI	AGCT	2 cut(s)	223, 477
AlwI	GGATC	2 cut(s)	255, 285
Ama87I	CYCGRG	1 cut(s)	171
ApeKI	GCWGC	1 cut(s)	474
ApoI	RAATTY	1 cut(s)	413
AspS9I	GGNCC	1 cut(s)	120
AsuC2I	CCSGG	2 cut(s)	124, 294
AvaI	CYCGRG	1 cut(s)	171
AvaII	GGWCC	1 cut(s)	120
BbrPI	CACGTG	1 cut(s)	368
BccI	CCATC	3 cut(s)	321, 446, 451
BcnI	CCSGG	2 cut(s)	124, 294
BisI	GCNGC	1 cut(s)	475
BlsI	GCNGC	1 cut(s)	476
Bme1390I	CCNGG	2 cut(s)	124, 294
Bme18I	GGWCC	1 cut(s)	120
BmeT110I	CYCGRG	1 cut(s)	171
BmgT120I	GGNCC	1 cut(s)	120
BmiI	GGNNCC	2 cut(s)	122, 378
BmrFI	CCNGG	2 cut(s)	124, 294
BmsI	GCATC	2 cut(s)	195, 314
BpmI	CTGGAG	1 cut(s)	463
BpuMI	CCSGG	2 cut(s)	124, 294
BsaAI	YACGTR	2 cut(s)	147, 368
BsaJI	CCNNGG	1 cut(s)	170
BsaWI	WCCGGW	1 cut(s)	379
Bsc4I	CCNNNNNNNGG	1 cut(s)	328
Bse1I	ACTGG	1 cut(s)	190
BseDI	CCNNGG	1 cut(s)	170
BseGI	GGATG	3 cut(s)	210, 280, 313
BseLI	CCNNNNNNNGG	1 cut(s)	328
BseNI	ACTGG	1 cut(s)	190
BseRI	GAGGAG	2 cut(s)	20, 159
BsiHKCI	CYCGRG	1 cut(s)	171
BsiSI	CCGG	3 cut(s)	124, 294, 380
BslI	CCNNNNNNNGG	1 cut(s)	328
BsoBI	CYCGRG	1 cut(s)	171
Bsp143I	GATC	3 cut(s)	247, 277, 466
BspHI	TCATGA	1 cut(s)	91
BspLI	GGNNCC	2 cut(s)	122, 378
BspPI	GGATC	2 cut(s)	255, 285
BsrI	ACTGG	1 cut(s)	190
BssECI	CCNNGG	1 cut(s)	170
BssMI	GATC	3 cut(s)	247, 277, 466
Bst4CI	ACNGT	2 cut(s)	68, 265
Bst6I	CTCTTC	1 cut(s)	404
BstBAI	YACGTR	2 cut(s)	147, 368
BstC8I	GCNNGC	2 cut(s)	256, 303
BstF5I	GGATG	3 cut(s)	210, 280, 313
BstKTI	GATC	3 cut(s)	250, 280, 469
BstMBI	GATC	3 cut(s)	247, 277, 466
BstMWI	GCNNNNNNNGC	2 cut(s)	298, 480
BstNSI	RCATGY	1 cut(s)	305
BstSCI	CCNGG	2 cut(s)	122, 292
BstSNI	TACGTA	1 cut(s)	147
BtsCI	GGATG	3 cut(s)	210, 280, 313
Cac8I	GCNNGC	2 cut(s)	256, 303
CciI	TCATGA	1 cut(s)	91
Cfr13I	GGNCC	1 cut(s)	120
Csp6I	GTAC	3 cut(s)	227, 356, 394
CviAII	CATG	6 cut(s)	44, 92, 251, 302, 318, 326
CviJI	RGCY	6 cut(s)	42, 181, 189, 223, 332, 477
CviKI_1	RGCY	6 cut(s)	42, 181, 189, 223, 332, 477
CviQI	GTAC	3 cut(s)	227, 356, 394
DpnI	GATC	3 cut(s)	249, 279, 468
DpnII	GATC	3 cut(s)	247, 277, 466
Eam1104I	CTCTTC	1 cut(s)	404
EarI	CTCTTC	1 cut(s)	404
Eco105I	TACGTA	1 cut(s)	147
Eco47I	GGWCC	1 cut(s)	120
Eco72I	CACGTG	1 cut(s)	368
Eco88I	CYCGRG	1 cut(s)	171
EcoT22I	ATGCAT	1 cut(s)	307
FaeI	CATG	6 cut(s)	47, 95, 254, 305, 321, 329
FalI	AAGNNNNNCTT	4 cut(s)	207, 239, 383, 415
FatI	CATG	6 cut(s)	43, 91, 250, 301, 317, 325
FauNDI	CATATG	1 cut(s)	130
Fnu4HI	GCNGC	1 cut(s)	475
FokI	GGATG	3 cut(s)	217, 267, 300
Fsp4HI	GCNGC	1 cut(s)	475
GluI	GCNGC	1 cut(s)	475
GsuI	CTGGAG	1 cut(s)	463
HapII	CCGG	3 cut(s)	124, 294, 380
Hin1II	CATG	6 cut(s)	47, 95, 254, 305, 321, 329
HinfI	GANTC	2 cut(s)	197, 430
HpaII	CCGG	3 cut(s)	124, 294, 380
Hpy188III	TCNNGA	4 cut(s)	26, 92, 245, 409
HpyCH4III	ACNGT	2 cut(s)	68, 265
HpyCH4IV	ACGT	2 cut(s)	146, 367
HpyCH4V	TGCA	2 cut(s)	254, 305
HpyF10VI	GCNNNNNNNGC	2 cut(s)	298, 480
HpySE526I	ACGT	2 cut(s)	146, 367
Hsp92II	CATG	6 cut(s)	47, 95, 254, 305, 321, 329
Kzo9I	GATC	3 cut(s)	247, 277, 466
LmnI	GCTCC	1 cut(s)	482
LpnPI	CCDG	8 cut(s)	39, 56, 111, 137, 171, 230, 307, 393
LweI	GCATC	2 cut(s)	195, 314
MaeII	ACGT	2 cut(s)	146, 367
MaeIII	GTNAC	2 cut(s)	265, 363
MalI	GATC	3 cut(s)	249, 279, 468
MboI	GATC	3 cut(s)	247, 277, 466
MboII	GAAGA	4 cut(s)	12, 245, 352, 391
MluCI	AATT	3 cut(s)	13, 348, 413
MlyI	GAGTC	1 cut(s)	206
MmeI	TCCRAC	1 cut(s)	458
MnlI	CCTC	5 cut(s)	180, 268, 294, 407, 433
Mph1103I	ATGCAT	1 cut(s)	307
MspI	CCGG	3 cut(s)	124, 294, 380
MspR9I	CCNGG	2 cut(s)	124, 294
MwoI	GCNNNNNNNGC	2 cut(s)	298, 480
NciI	CCSGG	2 cut(s)	124, 294
NdeI	CATATG	1 cut(s)	130
NdeII	GATC	3 cut(s)	247, 277, 466
NlaIII	CATG	6 cut(s)	47, 95, 254, 305, 321, 329
NlaIV	GGNNCC	2 cut(s)	122, 378
NmuCI	GTSAC	1 cut(s)	363
NsiI	ATGCAT	1 cut(s)	307
NspI	RCATGY	1 cut(s)	305
PaeI	GCATGC	1 cut(s)	305
PagI	TCATGA	1 cut(s)	91
PfeI	GAWTC	1 cut(s)	430
PkrI	GCNGC	1 cut(s)	476
PleI	GAGTC	1 cut(s)	205
PmaCI	CACGTG	1 cut(s)	368
PmlI	CACGTG	1 cut(s)	368
PpsI	GAGTC	1 cut(s)	205
Ppu21I	YACGTR	2 cut(s)	147, 368
PspCI	CACGTG	1 cut(s)	368
PspN4I	GGNNCC	2 cut(s)	122, 378
PspPI	GGNCC	1 cut(s)	120
RsaI	GTAC	3 cut(s)	228, 357, 395
RsaNI	GTAC	3 cut(s)	227, 356, 394
SatI	GCNGC	1 cut(s)	475
Sau3AI	GATC	3 cut(s)	247, 277, 466
Sau96I	GGNCC	1 cut(s)	120
SchI	GAGTC	1 cut(s)	206
ScrFI	CCNGG	2 cut(s)	124, 294
SetI	ASST	6 cut(s)	100, 149, 225, 370, 399, 479
SfaNI	GCATC	2 cut(s)	195, 314
SinI	GGWCC	1 cut(s)	120
SnaBI	TACGTA	1 cut(s)	147
SphI	GCATGC	1 cut(s)	305
Sse9I	AATT	3 cut(s)	13, 348, 413
SspI	AATATT	1 cut(s)	158
StyD4I	CCNGG	2 cut(s)	122, 292
TaaI	ACNGT	2 cut(s)	68, 265
TaiI	ACGT	2 cut(s)	149, 370
TaqI	TCGA	2 cut(s)	387, 441
TasI	AATT	3 cut(s)	13, 348, 413
TatI	WGTACW	2 cut(s)	226, 355
TfiI	GAWTC	1 cut(s)	430
TseFI	GTSAC	1 cut(s)	363
TseI	GCWGC	1 cut(s)	474
Tsp45I	GTSAC	1 cut(s)	363
TspDTI	ATGAA	3 cut(s)	60, 108, 353
TspGWI	ACGGA	2 cut(s)	133, 415
VpaK11BI	GGWCC	1 cut(s)	120
XapI	RAATTY	1 cut(s)	413
XceI	RCATGY	1 cut(s)	305
Zsp2I	ATGCAT	1 cut(s)	307

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.