Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0005075

Physical Location & Seq

Genomic Coordinates Forward (+)

24627417 .. 24628130

Gene Structure 714 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0179300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 612 bp

ATGTTTCACCTCCAAGCGCTGCGCGATCAAGACGGCAAGGACTACACCGAGTTCAAAGACTCCAACGCTGAGTTGCTCATCCCGAGTTTTGTCAATCCCTTGCCAACTGCTAAAGTCCTACCTAGCAGGGTATTCGTGAAGGAGGGAGCGAAATCATTTCTCAACATAATGAAAAGGTTTAGAGATACCAAGGGTATTTTGGTGAACACGTTCACAAACCTAGAATCGCATGCCCTTCATGCTCTTTCATCTGATGCCGAGATCCCTCCCGTATATCCGTGTTCTTGTGCTTTGGAAGCATGGGAAGCTTTGGCAATTGAGGACCAGGTGAAAGAGATCGCCCACGCCCAGGAGCACGCGGGCCATAGGTTCTTGTGGTCCTTACGCCGGCCTCCACCCACAGGAAGAATTGCTTTTCCAAGTCACTACGATGACCACACAAGAGTCTTGCCCAAAGGGTTCCTCGATCGAACAGTTGGGATTGGAATGGTCAGAGGCTGGGCCCCGCAAGTTGTCGTCTTGGCTCATCCATCTGTTGGAGGATTTGTATCCCATTGTGGGTGGAATTCCACGCTTGAGAGTTTTTGGCATGGTGCGCAGGTTGCCACGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000045 GO:0000151 GO:0000153 GO:0000422 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006914 GO:0006996 GO:0007005 GO:0007033 GO:0008150 GO:0008152 GO:0009056 GO:0009987 GO:0016043 GO:0016236 GO:0016740 GO:0019776 GO:0022411 GO:0022607 GO:0032991 GO:0044085 GO:0044237 GO:0044248 GO:0044424 GO:0044444 GO:0044464 GO:0044804 GO:0061726 GO:0061919 GO:0070925 GO:0071840 GO:1902494 GO:1903008 GO:1905037 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko04136 ko04138 ko04140 ko05167 map04136 map04138 map04140 map05167

Pfam Domains

Protein Families

Autophagy_C Autophagy_N Autophagy_act_C

Protein Analysis

203

Amino Acids

22.64

Weight (kDa)

6.83

Isoelectric Point (pI)

44.76

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UDPGT	PF00201	107 - 199	6.2e-11	UDP-glucoronosyl and UDP-glucosyl transferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005075)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G61500 AT5G61500
fragaria_vesca	FvH4_7g09530 FvH4_7g09530 FvH4_7g09530 FvH4_7g09530
malus_domestica	MD02G1218100.v1.1 MD07G1099000.v1.1 MD07G1099100.v1.1
prunus_persica	Prupe.2G123000_v2.0.a1 Prupe.2G123000_v2.0.a1 Prupe.2G123000_v2.0.a1
pyrus_communis	pycom1310g00040
rosa_chinensis	RchiOBHm_Chr1g0346321 RchiOBHm_Chr4g0385331
rosa_laevigata	RLG00000028805
rosa_multiflora	Rmu_co8505273.1_g000001 Rmu_sc0003363.1_g000042 Rmu_sc0003522.1_g000055
rosa_roxburghii	Rroxscaffold_4G00308710
rosa_rugosa	Rorug01G0179200 Rorug01G0179300 Rorug01G0179400 Rorug02G0522300 Rorug04G0105900
rosa_samantha	Rh1AG198600 Rh1BG164600 Rh1CG183900 Rh1DG195300
rosa_wichuraiana	Rw1G016690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	597
Acc36I	ACCTGC	1 cut(s)	589
AccB7I	CCANNNNNTGG	1 cut(s)	536
AccII	CGCG	2 cut(s)	24, 359
AciI	CCGC	2 cut(s)	359, 506
AclWI	GGATC	1 cut(s)	256
AcsI	RAATTY	1 cut(s)	565
AcvI	CACGTG	1 cut(s)	609
AfeI	AGCGCT	1 cut(s)	18
AfiI	CCNNNNNNNGG	5 cut(s)	349, 387, 401, 536, 558
AflIII	ACRYGT	1 cut(s)	207
AgsI	TTSAA	1 cut(s)	55
AjnI	CCWGG	2 cut(s)	324, 348
AluBI	AGCT	1 cut(s)	308
AluI	AGCT	1 cut(s)	308
Alw21I	GWGCWC	1 cut(s)	357
AlwI	GGATC	1 cut(s)	256
AlwNI	CAGNNNCTG	1 cut(s)	498
Ama87I	CYCGRG	1 cut(s)	82
Aor51HI	AGCGCT	1 cut(s)	18
AoxI	GGCC	3 cut(s)	361, 389, 501
ApaI	GGGCCC	1 cut(s)	505
ApeKI	GCWGC	1 cut(s)	19
ApoI	RAATTY	1 cut(s)	565
Asp700I	GAANNNNTTC	1 cut(s)	209
AspLEI	GCGC	3 cut(s)	19, 24, 598
AspS9I	GGNCC	5 cut(s)	322, 361, 378, 501, 502
AsuHPI	GGTGA	2 cut(s)	214, 340
AvaI	CYCGRG	1 cut(s)	82
AvaII	GGWCC	2 cut(s)	322, 378
BaeGI	GKGCMC	1 cut(s)	505
BanII	GRGCYC	1 cut(s)	505
BbrPI	CACGTG	1 cut(s)	609
Bbv12I	GWGCWC	1 cut(s)	357
BbvI	GCAGC	1 cut(s)	6
BccI	CCATC	1 cut(s)	538
BceAI	ACGGC	1 cut(s)	49
BcgI	CGANNNNNNTGC	2 cut(s)	115, 149
BciT130I	CCWGG	2 cut(s)	326, 350
BciVI	GTATCC	1 cut(s)	559
BfaI	CTAG	2 cut(s)	123, 221
BfoI	RGCGCY	1 cut(s)	20
BfuAI	ACCTGC	1 cut(s)	589
BfuI	GTATCC	1 cut(s)	559
BisI	GCNGC	1 cut(s)	20
BlsI	GCNGC	1 cut(s)	21
Bme1390I	CCNGG	2 cut(s)	326, 350
Bme18I	GGWCC	2 cut(s)	322, 378
BmeT110I	CYCGRG	1 cut(s)	82
BmgT120I	GGNCC	5 cut(s)	322, 361, 378, 501, 502
BmiI	GGNNCC	3 cut(s)	461, 503, 504
BmrFI	CCNGG	2 cut(s)	326, 350
BmsI	GCATC	1 cut(s)	244
BpuEI	CTTGAG	1 cut(s)	596
BsaAI	YACGTR	1 cut(s)	609
BsaBI	GATNNNNATC	1 cut(s)	547
BsaJI	CCNNGG	2 cut(s)	189, 348
BsaXI	ACNNNNNCTCC	2 cut(s)	531, 561
Bsc4I	CCNNNNNNNGG	5 cut(s)	349, 387, 401, 536, 558
Bse118I	RCCGGY	1 cut(s)	387
Bse8I	GATNNNNATC	1 cut(s)	547
BseBI	CCWGG	2 cut(s)	326, 350
BseDI	CCNNGG	2 cut(s)	189, 348
BseGI	GGATG	2 cut(s)	78, 526
BseJI	GATNNNNATC	1 cut(s)	547
BseLI	CCNNNNNNNGG	5 cut(s)	349, 387, 401, 536, 558
BseMII	CTCAG	1 cut(s)	60
BseSI	GKGCMC	1 cut(s)	505
BseXI	GCAGC	1 cut(s)	6
BseYI	CCCAGC	1 cut(s)	498
Bsh1236I	CGCG	2 cut(s)	24, 359
Bsh1285I	CGRYCG	1 cut(s)	469
BshFI	GGCC	3 cut(s)	363, 391, 503
BsiEI	CGRYCG	1 cut(s)	469
BsiHKAI	GWGCWC	1 cut(s)	357
BsiHKCI	CYCGRG	1 cut(s)	82
BsiSI	CCGG	1 cut(s)	388
BslI	CCNNNNNNNGG	5 cut(s)	349, 387, 401, 536, 558
BsnI	GGCC	3 cut(s)	363, 391, 503
BsoBI	CYCGRG	1 cut(s)	82
Bsp120I	GGGCCC	1 cut(s)	501
Bsp1286I	GDGCHC	2 cut(s)	357, 505
Bsp143I	GATC	4 cut(s)	25, 261, 336, 466
BspACI	CCGC	2 cut(s)	359, 506
BspANI	GGCC	3 cut(s)	363, 391, 503
BspCNI	CTCAG	1 cut(s)	61
BspFNI	CGCG	2 cut(s)	24, 359
BspLI	GGNNCC	3 cut(s)	461, 503, 504
BspMI	ACCTGC	1 cut(s)	589
BspPI	GGATC	1 cut(s)	256
BsrFI	RCCGGY	1 cut(s)	387
BssAI	RCCGGY	1 cut(s)	387
BssECI	CCNNGG	2 cut(s)	189, 348
BssMI	GATC	4 cut(s)	25, 261, 336, 466
BssT1I	CCWWGG	1 cut(s)	189
Bst2UI	CCWGG	2 cut(s)	326, 350
Bst4CI	ACNGT	1 cut(s)	475
BstBAI	YACGTR	1 cut(s)	609
BstC8I	GCNNGC	4 cut(s)	231, 357, 361, 389
BstDEI	CTNAG	1 cut(s)	69
BstF5I	GGATG	2 cut(s)	78, 526
BstFNI	CGCG	2 cut(s)	24, 359
BstH2I	RGCGCY	1 cut(s)	20
BstHHI	GCGC	3 cut(s)	19, 24, 598
BstKTI	GATC	4 cut(s)	28, 264, 339, 469
BstMBI	GATC	4 cut(s)	25, 261, 336, 466
BstMCI	CGRYCG	1 cut(s)	469
BstMWI	GCNNNNNNNGC	5 cut(s)	239, 296, 305, 595, 602
BstNI	CCWGG	2 cut(s)	326, 350
BstNSI	RCATGY	1 cut(s)	233
BstSCI	CCNGG	2 cut(s)	324, 348
BstSLI	GKGCMC	1 cut(s)	505
BstUI	CGCG	2 cut(s)	24, 359
BstV1I	GCAGC	1 cut(s)	6
BstX2I	RGATCY	1 cut(s)	261
BstYI	RGATCY	1 cut(s)	261
BsuI	GTATCC	1 cut(s)	559
BsuRI	GGCC	3 cut(s)	363, 391, 503
BtsCI	GGATG	2 cut(s)	78, 526
BveI	ACCTGC	1 cut(s)	589
Cac8I	GCNNGC	4 cut(s)	231, 357, 361, 389
CaiI	CAGNNNCTG	1 cut(s)	498
CfoI	GCGC	3 cut(s)	19, 24, 598
Cfr10I	RCCGGY	1 cut(s)	387
Cfr13I	GGNCC	5 cut(s)	322, 361, 378, 501, 502
CsiI	ACCWGGT	1 cut(s)	324
CviAII	CATG	4 cut(s)	230, 239, 300, 590
CviJI	RGCY	6 cut(s)	308, 363, 391, 498, 503, 524
CviKI_1	RGCY	6 cut(s)	308, 363, 391, 498, 503, 524
DdeI	CTNAG	1 cut(s)	69
DpnI	GATC	4 cut(s)	27, 263, 338, 468
DpnII	GATC	4 cut(s)	25, 261, 336, 466
Eco130I	CCWWGG	1 cut(s)	189
Eco24I	GRGCYC	1 cut(s)	505
Eco47I	GGWCC	2 cut(s)	322, 378
Eco47III	AGCGCT	1 cut(s)	18
Eco72I	CACGTG	1 cut(s)	609
Eco88I	CYCGRG	1 cut(s)	82
EcoO109I	RGGNCCY	1 cut(s)	502
EcoRI	GAATTC	1 cut(s)	565
EcoRII	CCWGG	2 cut(s)	324, 348
EcoT14I	CCWWGG	1 cut(s)	189
EcoT38I	GRGCYC	1 cut(s)	505
ErhI	CCWWGG	1 cut(s)	189
FaeI	CATG	4 cut(s)	233, 242, 303, 593
FaiI	YATR	7 cut(s)	167, 231, 240, 274, 301, 366, 591
FalI	AAGNNNNNCTT	2 cut(s)	397, 429
FatI	CATG	4 cut(s)	229, 238, 299, 589
FauI	CCCGC	2 cut(s)	352, 513
Fnu4HI	GCNGC	1 cut(s)	20
FokI	GGATG	2 cut(s)	65, 513
FriOI	GRGCYC	1 cut(s)	505
Fsp4HI	GCNGC	1 cut(s)	20
FspBI	CTAG	2 cut(s)	123, 221
FspI	TGCGCA	1 cut(s)	597
GlaI	GCGC	3 cut(s)	18, 23, 597
GluI	GCNGC	1 cut(s)	20
GsaI	CCCAGC	1 cut(s)	502
HaeII	RGCGCY	1 cut(s)	20
HaeIII	GGCC	3 cut(s)	363, 391, 503
HapII	CCGG	1 cut(s)	388
HhaI	GCGC	3 cut(s)	19, 24, 598
Hin1II	CATG	4 cut(s)	233, 242, 303, 593
Hin6I	GCGC	3 cut(s)	17, 22, 596
HinP1I	GCGC	3 cut(s)	17, 22, 596
HindIII	AAGCTT	1 cut(s)	306
HinfI	GANTC	3 cut(s)	59, 224, 444
HpaII	CCGG	1 cut(s)	388
HphI	GGTGA	2 cut(s)	214, 340
Hpy166II	GTNNAC	2 cut(s)	205, 213
Hpy188I	TCNGA	2 cut(s)	253, 494
Hpy188III	TCNNGA	3 cut(s)	29, 82, 136
Hpy8I	GTNNAC	2 cut(s)	205, 213
HpyAV	CCTTC	2 cut(s)	133, 245
HpyCH4III	ACNGT	1 cut(s)	475
HpyCH4IV	ACGT	2 cut(s)	209, 608
HpyF10VI	GCNNNNNNNGC	5 cut(s)	239, 296, 305, 595, 602
HpyF3I	CTNAG	1 cut(s)	69
HpySE526I	ACGT	2 cut(s)	209, 608
Hsp92II	CATG	4 cut(s)	233, 242, 303, 593
HspAI	GCGC	3 cut(s)	17, 22, 596
KroI	GCCGGC	1 cut(s)	387
KroNI	GCCGGC	1 cut(s)	389
Kzo9I	GATC	4 cut(s)	25, 261, 336, 466
LmnI	GCTCC	2 cut(s)	146, 352
LpnPI	CCDG	9 cut(s)	112, 311, 335, 338, 362, 387, 401, 484, 584
Lsp1109I	GCAGC	1 cut(s)	6
LweI	GCATC	1 cut(s)	244
MabI	ACCWGGT	1 cut(s)	324
MaeI	CTAG	2 cut(s)	123, 221
MaeII	ACGT	2 cut(s)	209, 608
MaeIII	GTNAC	1 cut(s)	422
MalI	GATC	4 cut(s)	27, 263, 338, 468
MboI	GATC	4 cut(s)	25, 261, 336, 466
MboII	GAAGA	1 cut(s)	417
MfeI	CAATTG	1 cut(s)	315
MflI	RGATCY	1 cut(s)	261
MhlI	GDGCHC	2 cut(s)	357, 505
MluCI	AATT	3 cut(s)	315, 408, 565
MlyI	GAGTC	2 cut(s)	53, 453
MmeI	TCCRAC	2 cut(s)	87, 517
MnlI	CCTC	8 cut(s)	20, 136, 276, 313, 402, 473, 488, 533
MroNI	GCCGGC	1 cut(s)	387
MroXI	GAANNNNTTC	1 cut(s)	209
MslI	CAYNNNNRTG	1 cut(s)	429
MspI	CCGG	1 cut(s)	388
MspR9I	CCNGG	2 cut(s)	326, 350
MteI	GCGCNGCGC	1 cut(s)	20
MunI	CAATTG	1 cut(s)	315
MvaI	CCWGG	2 cut(s)	326, 350
MvnI	CGCG	2 cut(s)	24, 359
MwoI	GCNNNNNNNGC	5 cut(s)	239, 296, 305, 595, 602
NaeI	GCCGGC	1 cut(s)	389
NdeII	GATC	4 cut(s)	25, 261, 336, 466
NgoMIV	GCCGGC	1 cut(s)	387
NlaIII	CATG	4 cut(s)	233, 242, 303, 593
NlaIV	GGNNCC	3 cut(s)	461, 503, 504
NmeAIII	GCCGAG	1 cut(s)	283
NmuCI	GTSAC	1 cut(s)	422
NsbI	TGCGCA	1 cut(s)	597
NspI	RCATGY	1 cut(s)	233
PaeI	GCATGC	1 cut(s)	233
PdiI	GCCGGC	1 cut(s)	389
PdmI	GAANNNNTTC	1 cut(s)	209
PfeI	GAWTC	1 cut(s)	224
PflMI	CCANNNNNTGG	1 cut(s)	536
PkrI	GCNGC	1 cut(s)	21
Ple19I	CGATCG	1 cut(s)	469
PleI	GAGTC	2 cut(s)	53, 452
PmaCI	CACGTG	1 cut(s)	609
PmlI	CACGTG	1 cut(s)	609
PpsI	GAGTC	2 cut(s)	53, 452
Ppu21I	YACGTR	1 cut(s)	609
Psp6I	CCWGG	2 cut(s)	324, 348
PspCI	CACGTG	1 cut(s)	609
PspFI	CCCAGC	1 cut(s)	498
PspGI	CCWGG	2 cut(s)	324, 348
PspN4I	GGNNCC	3 cut(s)	461, 503, 504
PspOMI	GGGCCC	1 cut(s)	501
PspPI	GGNCC	5 cut(s)	322, 361, 378, 501, 502
PstNI	CAGNNNCTG	1 cut(s)	498
PsuI	RGATCY	1 cut(s)	261
PvuI	CGATCG	1 cut(s)	469
RseI	CAYNNNNRTG	1 cut(s)	429
SatI	GCNGC	1 cut(s)	20
Sau3AI	GATC	4 cut(s)	25, 261, 336, 466
Sau96I	GGNCC	5 cut(s)	322, 361, 378, 501, 502
SchI	GAGTC	2 cut(s)	53, 453
ScrFI	CCNGG	2 cut(s)	326, 350
SduI	GDGCHC	2 cut(s)	357, 505
SexAI	ACCWGGT	1 cut(s)	324
SfaNI	GCATC	1 cut(s)	244
SinI	GGWCC	2 cut(s)	322, 378
SmiMI	CAYNNNNRTG	1 cut(s)	429
SmlI	CTYRAG	1 cut(s)	575
SmoI	CTYRAG	1 cut(s)	575
SphI	GCATGC	1 cut(s)	233
Sse9I	AATT	3 cut(s)	315, 408, 565
SsiI	CCGC	2 cut(s)	359, 506
SspMI	CTAG	2 cut(s)	123, 221
StyD4I	CCNGG	2 cut(s)	324, 348
StyI	CCWWGG	1 cut(s)	189
TaaI	ACNGT	1 cut(s)	475
TaiI	ACGT	2 cut(s)	212, 611
TaqI	TCGA	2 cut(s)	465, 469
TasI	AATT	3 cut(s)	315, 408, 565
TfiI	GAWTC	1 cut(s)	224
TseFI	GTSAC	1 cut(s)	422
TseI	GCWGC	1 cut(s)	19
Tsp45I	GTSAC	1 cut(s)	422
TspDTI	ATGAA	3 cut(s)	185, 227, 237
TspGWI	ACGGA	1 cut(s)	267
Van91I	CCANNNNNTGG	1 cut(s)	536
VpaK11BI	GGWCC	2 cut(s)	322, 378
XapI	RAATTY	1 cut(s)	565
XceI	RCATGY	1 cut(s)	233
XcmI	CCANNNNNNNNNTGG	1 cut(s)	196
XmnI	GAANNNNTTC	1 cut(s)	209
XspI	CTAG	2 cut(s)	123, 221

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.