Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0005075

Physical Location & Seq

Genomic Coordinates Forward (+)

24620402 .. 24620602

Gene Structure 201 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0179200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 201 bp

ATGGAGAAACCTGCAGAGCTCGTGTTCATCCCATCCCCTGGTATAGGCCACCTAGTTTCAACACTTGAGATCTCAAAGTTCCTCCTGTCTCTAGACGACCAACTCTTGATCACTGTCCTCATCATGAAGTTTCCGGCTGTTTCCAAAGGAACTGATGCTTATGTCGAGTCATTTGCAGACTCTTCTTCTCCCATATCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000045 GO:0000151 GO:0000153 GO:0000422 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006914 GO:0006996 GO:0007005 GO:0007033 GO:0008150 GO:0008152 GO:0009056 GO:0009987 GO:0016043 GO:0016236 GO:0016740 GO:0019776 GO:0022411 GO:0022607 GO:0032991 GO:0044085 GO:0044237 GO:0044248 GO:0044424 GO:0044444 GO:0044464 GO:0044804 GO:0061726 GO:0061919 GO:0070925 GO:0071840 GO:1902494 GO:1903008 GO:1905037 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko04136 ko04138 ko04140 ko05167 map04136 map04138 map04140 map05167

Pfam Domains

Protein Families

Autophagy_C Autophagy_N Autophagy_act_C

Protein Analysis

66

Amino Acids

7.1

Weight (kDa)

4.5

Isoelectric Point (pI)

42.7

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0005075)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G61500 AT5G61500
fragaria_vesca	FvH4_7g09530 FvH4_7g09530 FvH4_7g09530 FvH4_7g09530
malus_domestica	MD02G1218100.v1.1 MD07G1099000.v1.1 MD07G1099100.v1.1
prunus_persica	Prupe.2G123000_v2.0.a1 Prupe.2G123000_v2.0.a1 Prupe.2G123000_v2.0.a1
pyrus_communis	pycom1310g00040
rosa_chinensis	RchiOBHm_Chr1g0346321 RchiOBHm_Chr4g0385331
rosa_laevigata	RLG00000028805
rosa_multiflora	Rmu_co8505273.1_g000001 Rmu_sc0003363.1_g000042 Rmu_sc0003522.1_g000055
rosa_roxburghii	Rroxscaffold_4G00308710
rosa_rugosa	Rorug01G0179200 Rorug01G0179300 Rorug01G0179400 Rorug02G0522300 Rorug04G0105900
rosa_samantha	Rh1AG198600 Rh1BG164600 Rh1CG183900 Rh1DG195300
rosa_wichuraiana	Rw1G016690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	19
AccB7I	CCANNNNNTGG	1 cut(s)	38
AfiI	CCNNNNNNNGG	2 cut(s)	38, 44
AgsI	TTSAA	1 cut(s)	60
AjnI	CCWGG	1 cut(s)	37
AluBI	AGCT	1 cut(s)	19
AluI	AGCT	1 cut(s)	19
Alw21I	GWGCWC	1 cut(s)	21
Alw26I	GTCTC	1 cut(s)	93
AoxI	GGCC	1 cut(s)	46
BanII	GRGCYC	1 cut(s)	21
BauI	CACGAG	1 cut(s)	20
Bbv12I	GWGCWC	1 cut(s)	21
BccI	CCATC	1 cut(s)	40
BcgI	CGANNNNNNTGC	2 cut(s)	155, 189
BciT130I	CCWGG	1 cut(s)	39
BclI	TGATCA	1 cut(s)	108
BcoDI	GTCTC	1 cut(s)	93
BfaI	CTAG	2 cut(s)	53, 92
BfmI	CTRYAG	1 cut(s)	12
BfuAI	ACCTGC	1 cut(s)	19
BglII	AGATCT	1 cut(s)	69
Bme1390I	CCNGG	1 cut(s)	39
BmrFI	CCNGG	1 cut(s)	39
BmsI	GCATC	1 cut(s)	145
BpuEI	CTTGAG	1 cut(s)	86
BsaJI	CCNNGG	1 cut(s)	37
Bsc4I	CCNNNNNNNGG	2 cut(s)	38, 44
BseBI	CCWGG	1 cut(s)	39
BseDI	CCNNGG	1 cut(s)	37
BseGI	GGATG	2 cut(s)	27, 32
BseLI	CCNNNNNNNGG	2 cut(s)	38, 44
BshFI	GGCC	1 cut(s)	48
BsiHKAI	GWGCWC	1 cut(s)	21
BsiSI	CCGG	1 cut(s)	134
BslI	CCNNNNNNNGG	2 cut(s)	38, 44
BsmAI	GTCTC	1 cut(s)	93
BsnI	GGCC	1 cut(s)	48
Bsp1286I	GDGCHC	1 cut(s)	21
Bsp143I	GATC	2 cut(s)	69, 108
BspANI	GGCC	1 cut(s)	48
BspHI	TCATGA	1 cut(s)	123
BspMAI	CTGCAG	1 cut(s)	16
BspMI	ACCTGC	1 cut(s)	19
BssECI	CCNNGG	1 cut(s)	37
BssMI	GATC	2 cut(s)	69, 108
BssSI	CACGAG	1 cut(s)	20
Bst2BI	CACGAG	1 cut(s)	20
Bst2UI	CCWGG	1 cut(s)	39
Bst4CI	ACNGT	1 cut(s)	115
Bst6I	CTCTTC	1 cut(s)	187
BstENI	CCTNNNNNAGG	1 cut(s)	42
BstF5I	GGATG	2 cut(s)	27, 32
BstKTI	GATC	2 cut(s)	72, 111
BstMAI	GTCTC	1 cut(s)	93
BstMBI	GATC	2 cut(s)	69, 108
BstNI	CCWGG	1 cut(s)	39
BstSCI	CCNGG	1 cut(s)	37
BstSFI	CTRYAG	1 cut(s)	12
BstX2I	RGATCY	1 cut(s)	69
BstYI	RGATCY	1 cut(s)	69
BsuRI	GGCC	1 cut(s)	48
BtsCI	GGATG	2 cut(s)	27, 32
BtsIMutI	CAGTG	1 cut(s)	111
BveI	ACCTGC	1 cut(s)	19
CciI	TCATGA	1 cut(s)	123
CviAII	CATG	1 cut(s)	124
CviJI	RGCY	3 cut(s)	19, 48, 137
CviKI_1	RGCY	3 cut(s)	19, 48, 137
DpnI	GATC	2 cut(s)	71, 110
DpnII	GATC	2 cut(s)	69, 108
Eam1104I	CTCTTC	1 cut(s)	187
EarI	CTCTTC	1 cut(s)	187
Ecl136II	GAGCTC	1 cut(s)	19
Eco24I	GRGCYC	1 cut(s)	21
Eco53kI	GAGCTC	1 cut(s)	19
EcoICRI	GAGCTC	1 cut(s)	19
EcoNI	CCTNNNNNAGG	1 cut(s)	42
EcoRII	CCWGG	1 cut(s)	37
EcoT38I	GRGCYC	1 cut(s)	21
FaeI	CATG	1 cut(s)	127
FaiI	YATR	5 cut(s)	44, 125, 162, 194, 199
FatI	CATG	1 cut(s)	123
FbaI	TGATCA	1 cut(s)	108
FokI	GGATG	2 cut(s)	14, 19
FriOI	GRGCYC	1 cut(s)	21
FspBI	CTAG	2 cut(s)	53, 92
HaeIII	GGCC	1 cut(s)	48
HapII	CCGG	1 cut(s)	134
Hin1II	CATG	1 cut(s)	127
HinfI	GANTC	2 cut(s)	167, 179
HpaII	CCGG	1 cut(s)	134
Hpy188III	TCNNGA	3 cut(s)	92, 106, 124
HpyCH4III	ACNGT	1 cut(s)	115
HpyCH4V	TGCA	2 cut(s)	14, 176
Hsp92II	CATG	1 cut(s)	127
Ksp22I	TGATCA	1 cut(s)	108
Kzo9I	GATC	2 cut(s)	69, 108
LpnPI	CCDG	5 cut(s)	24, 24, 51, 98, 147
LweI	GCATC	1 cut(s)	145
MaeI	CTAG	2 cut(s)	53, 92
MalI	GATC	2 cut(s)	71, 110
MboI	GATC	2 cut(s)	69, 108
MboII	GAAGA	2 cut(s)	174, 177
MflI	RGATCY	1 cut(s)	69
MhlI	GDGCHC	1 cut(s)	21
MlyI	GAGTC	2 cut(s)	173, 176
MnlI	CCTC	2 cut(s)	92, 128
MspI	CCGG	1 cut(s)	134
MspR9I	CCNGG	1 cut(s)	39
MvaI	CCWGG	1 cut(s)	39
NdeII	GATC	2 cut(s)	69, 108
NlaIII	CATG	1 cut(s)	127
PagI	TCATGA	1 cut(s)	123
PflMI	CCANNNNNTGG	1 cut(s)	38
PleI	GAGTC	2 cut(s)	173, 175
PpsI	GAGTC	2 cut(s)	173, 175
Psp124BI	GAGCTC	1 cut(s)	21
Psp6I	CCWGG	1 cut(s)	37
PspGI	CCWGG	1 cut(s)	37
PstI	CTGCAG	1 cut(s)	16
PsuI	RGATCY	1 cut(s)	69
SacI	GAGCTC	1 cut(s)	21
Sau3AI	GATC	2 cut(s)	69, 108
SchI	GAGTC	2 cut(s)	173, 176
ScrFI	CCNGG	1 cut(s)	39
SduI	GDGCHC	1 cut(s)	21
SetI	ASST	3 cut(s)	13, 21, 54
SfaNI	GCATC	1 cut(s)	145
SfcI	CTRYAG	1 cut(s)	12
SmlI	CTYRAG	1 cut(s)	65
SmoI	CTYRAG	1 cut(s)	65
SspMI	CTAG	2 cut(s)	53, 92
SstI	GAGCTC	1 cut(s)	21
StyD4I	CCNGG	1 cut(s)	37
TaaI	ACNGT	1 cut(s)	115
TaqI	TCGA	1 cut(s)	165
TscAI	CASTG	1 cut(s)	118
TspDTI	ATGAA	2 cut(s)	16, 140
TspRI	CASTG	1 cut(s)	118
Van91I	CCANNNNNTGG	1 cut(s)	38
XagI	CCTNNNNNAGG	1 cut(s)	42
XbaI	TCTAGA	1 cut(s)	91
XspI	CTAG	2 cut(s)	53, 92

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.