Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003522.1

Orthogroup ID

OG0005075

Physical Location & Seq

Genomic Coordinates Forward (+)

214245 .. 215439

Gene Structure 1195 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003522.1_g000055.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 522 bp

atgaaagatggaggtgcgccactacaagcatgtgacggtgctgtcagggtggggctgctgatgtcggcgaagctggctgctggtggcggattttcatgggctcggtgttcaaatcatggttggttgaatggcaaacaacaactctggtggcggaggaagcatgttggtgggtccttgggcttctgggtagctggttgggactgcagcgccgggatctcttgggtccagaatgagcattggcaaagcaaagcagcggaggttgaagacgacgaggacgacatggttctgtcacagaggcttcacgaggctttcaaaggcaccgtcgagaaaatcacagggcctcgcaccgtctccgctttcaaagagaaaggcgtcctcagcgtctccgagttcgtcaccgccggcgataacctcgtctccaagtgccctacctggtcttggtactccccaatcccctttcaatttccgttcttttctttgttcccaattcaatttctcgatttttcgtctcttcaaccataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000045 GO:0000151 GO:0000153 GO:0000422 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006914 GO:0006996 GO:0007005 GO:0007033 GO:0008150 GO:0008152 GO:0009056 GO:0009987 GO:0016043 GO:0016236 GO:0016740 GO:0019776 GO:0022411 GO:0022607 GO:0032991 GO:0044085 GO:0044237 GO:0044248 GO:0044424 GO:0044444 GO:0044464 GO:0044804 GO:0061726 GO:0061919 GO:0070925 GO:0071840 GO:1902494 GO:1903008 GO:1905037 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko04136 ko04138 ko04140 ko05167 map04136 map04138 map04140 map05167

Pfam Domains

Protein Families

Autophagy_C Autophagy_N Autophagy_act_C

Protein Analysis

173

Amino Acids

19.17

Weight (kDa)

6.41

Isoelectric Point (pI)

35.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005075)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G61500 AT5G61500
fragaria_vesca	FvH4_7g09530 FvH4_7g09530 FvH4_7g09530 FvH4_7g09530
malus_domestica	MD02G1218100.v1.1 MD07G1099000.v1.1 MD07G1099100.v1.1
prunus_persica	Prupe.2G123000_v2.0.a1 Prupe.2G123000_v2.0.a1 Prupe.2G123000_v2.0.a1
pyrus_communis	pycom1310g00040
rosa_chinensis	RchiOBHm_Chr1g0346321 RchiOBHm_Chr4g0385331
rosa_laevigata	RLG00000028805
rosa_multiflora	Rmu_co8505273.1_g000001 Rmu_sc0003363.1_g000042 Rmu_sc0003522.1_g000055
rosa_roxburghii	Rroxscaffold_4G00308710
rosa_rugosa	Rorug01G0179200 Rorug01G0179300 Rorug01G0179400 Rorug02G0522300 Rorug04G0105900
rosa_samantha	Rh1AG198600 Rh1BG164600 Rh1CG183900 Rh1DG195300
rosa_wichuraiana	Rw1G016690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	41
AccB1I	GGYRCC	1 cut(s)	317
AciI	CCGC	5 cut(s)	87, 151, 254, 354, 399
AclWI	GGATC	1 cut(s)	221
AcyI	GRCGYC	1 cut(s)	372
AfaI	GTAC	1 cut(s)	443
AfiI	CCNNNNNNNGG	1 cut(s)	438
AgsI	TTSAA	8 cut(s)	111, 127, 263, 313, 361, 461, 491, 515
AjnI	CCWGG	1 cut(s)	431
AluBI	AGCT	2 cut(s)	73, 191
AluI	AGCT	2 cut(s)	73, 191
Alw26I	GTCTC	4 cut(s)	355, 388, 421, 513
AlwI	GGATC	1 cut(s)	221
AoxI	GGCC	1 cut(s)	338
ApeKI	GCWGC	4 cut(s)	55, 77, 204, 251
ArsI	GACNNNNNNTTYG	2 cut(s)	306, 338
AspLEI	GCGC	2 cut(s)	19, 209
AspS9I	GGNCC	3 cut(s)	171, 223, 338
AsuC2I	CCSGG	1 cut(s)	211
AsuHPI	GGTGA	1 cut(s)	388
AvaII	GGWCC	2 cut(s)	171, 223
BaeGI	GKGCMC	1 cut(s)	428
BanI	GGYRCC	1 cut(s)	317
BanII	GRGCYC	1 cut(s)	103
BauI	CACGAG	1 cut(s)	302
BbsI	GAAGAC	1 cut(s)	270
BbvCI	CCTCAGC	1 cut(s)	377
BbvI	GCAGC	4 cut(s)	42, 64, 216, 263
BccI	CCATC	1 cut(s)	2
BciT130I	CCWGG	1 cut(s)	433
BcnI	CCSGG	1 cut(s)	211
BcoDI	GTCTC	4 cut(s)	355, 388, 421, 513
BfmI	CTRYAG	1 cut(s)	202
BfoI	RGCGCY	1 cut(s)	210
BisI	GCNGC	4 cut(s)	56, 78, 205, 252
BlsI	GCNGC	4 cut(s)	57, 79, 206, 253
Bme1390I	CCNGG	2 cut(s)	211, 433
Bme18I	GGWCC	2 cut(s)	171, 223
BmgT120I	GGNCC	3 cut(s)	171, 223, 338
BmiI	GGNNCC	3 cut(s)	172, 224, 319
BmrFI	CCNGG	2 cut(s)	211, 433
BpiI	GAAGAC	1 cut(s)	270
Bpu10I	CCTNAGC	1 cut(s)	377
BpuMI	CCSGG	1 cut(s)	211
BsaHI	GRCGYC	1 cut(s)	372
BsaJI	CCNNGG	1 cut(s)	174
BsaXI	ACNNNNNCTCC	2 cut(s)	401, 431
Bsc4I	CCNNNNNNNGG	1 cut(s)	438
Bse118I	RCCGGY	1 cut(s)	401
BseBI	CCWGG	1 cut(s)	433
BseDI	CCNNGG	1 cut(s)	174
BseLI	CCNNNNNNNGG	1 cut(s)	438
BseMII	CTCAG	1 cut(s)	391
BseSI	GKGCMC	1 cut(s)	428
BseXI	GCAGC	4 cut(s)	42, 64, 216, 263
BshFI	GGCC	1 cut(s)	340
BshNI	GGYRCC	1 cut(s)	317
BsiSI	CCGG	2 cut(s)	210, 402
BslFI	GGGAC	1 cut(s)	212
BslI	CCNNNNNNNGG	1 cut(s)	438
BsmAI	GTCTC	4 cut(s)	355, 388, 421, 513
BsmBI	CGTCTC	4 cut(s)	355, 388, 421, 513
BsmFI	GGGAC	1 cut(s)	212
BsnI	GGCC	1 cut(s)	340
Bsp1286I	GDGCHC	2 cut(s)	103, 428
Bsp143I	GATC	1 cut(s)	213
BspACI	CCGC	5 cut(s)	87, 151, 254, 354, 399
BspANI	GGCC	1 cut(s)	340
BspCNI	CTCAG	1 cut(s)	390
BspLI	GGNNCC	3 cut(s)	172, 224, 319
BspMAI	CTGCAG	1 cut(s)	206
BspPI	GGATC	1 cut(s)	221
BspT107I	GGYRCC	1 cut(s)	317
BsrFI	RCCGGY	1 cut(s)	401
BssAI	RCCGGY	1 cut(s)	401
BssECI	CCNNGG	1 cut(s)	174
BssMI	GATC	1 cut(s)	213
BssNI	GRCGYC	1 cut(s)	372
BssSI	CACGAG	1 cut(s)	302
BssT1I	CCWWGG	1 cut(s)	174
Bst2BI	CACGAG	1 cut(s)	302
Bst2UI	CCWGG	1 cut(s)	433
Bst4CI	ACNGT	3 cut(s)	38, 322, 349
Bst6I	CTCTTC	1 cut(s)	516
BstACI	GRCGYC	1 cut(s)	372
BstC8I	GCNNGC	2 cut(s)	75, 403
BstDEI	CTNAG	1 cut(s)	377
BstH2I	RGCGCY	1 cut(s)	210
BstHHI	GCGC	2 cut(s)	19, 209
BstKTI	GATC	1 cut(s)	216
BstMAI	GTCTC	4 cut(s)	355, 388, 421, 513
BstMBI	GATC	1 cut(s)	213
BstMWI	GCNNNNNNNGC	3 cut(s)	74, 157, 378
BstNI	CCWGG	1 cut(s)	433
BstNSI	RCATGY	2 cut(s)	33, 164
BstSCI	CCNGG	2 cut(s)	209, 431
BstSFI	CTRYAG	1 cut(s)	202
BstSLI	GKGCMC	1 cut(s)	428
BstV1I	GCAGC	4 cut(s)	42, 64, 216, 263
BstV2I	GAAGAC	1 cut(s)	270
BstX2I	RGATCY	1 cut(s)	213
BstYI	RGATCY	1 cut(s)	213
BsuRI	GGCC	1 cut(s)	340
Cac8I	GCNNGC	2 cut(s)	75, 403
CfoI	GCGC	2 cut(s)	19, 209
Cfr10I	RCCGGY	1 cut(s)	401
Cfr13I	GGNCC	3 cut(s)	171, 223, 338
CseI	GACGC	2 cut(s)	361, 370
CsiI	ACCWGGT	1 cut(s)	431
Csp6I	GTAC	1 cut(s)	442
CspCI	CAANNNNNGTGG	2 cut(s)	128, 163
CviAII	CATG	5 cut(s)	30, 96, 116, 161, 280
CviJI	RGCY	9 cut(s)	55, 73, 77, 101, 180, 191, 298, 308, 340
CviKI_1	RGCY	9 cut(s)	55, 73, 77, 101, 180, 191, 298, 308, 340
CviQI	GTAC	1 cut(s)	442
DdeI	CTNAG	1 cut(s)	377
DpnI	GATC	1 cut(s)	215
DpnII	GATC	1 cut(s)	213
DrdI	GACNNNNNNGTC	1 cut(s)	41
DseDI	GACNNNNNNGTC	1 cut(s)	41
Eam1104I	CTCTTC	1 cut(s)	516
EarI	CTCTTC	1 cut(s)	516
EciI	GGCGGA	2 cut(s)	102, 166
Eco130I	CCWWGG	1 cut(s)	174
Eco24I	GRGCYC	1 cut(s)	103
Eco47I	GGWCC	2 cut(s)	171, 223
EcoO109I	RGGNCCY	2 cut(s)	171, 338
EcoRII	CCWGG	1 cut(s)	431
EcoT14I	CCWWGG	1 cut(s)	174
EcoT38I	GRGCYC	1 cut(s)	103
ErhI	CCWWGG	1 cut(s)	174
Esp3I	CGTCTC	4 cut(s)	355, 388, 421, 513
FaeI	CATG	5 cut(s)	33, 99, 119, 164, 283
FaiI	YATR	6 cut(s)	31, 97, 117, 162, 281, 520
FaqI	GGGAC	1 cut(s)	212
FatI	CATG	5 cut(s)	29, 95, 115, 160, 279
Fnu4HI	GCNGC	4 cut(s)	56, 78, 205, 252
FriOI	GRGCYC	1 cut(s)	103
Fsp4HI	GCNGC	4 cut(s)	56, 78, 205, 252
GlaI	GCGC	2 cut(s)	18, 208
GluI	GCNGC	4 cut(s)	56, 78, 205, 252
HaeII	RGCGCY	1 cut(s)	210
HaeIII	GGCC	1 cut(s)	340
HapII	CCGG	2 cut(s)	210, 402
HgaI	GACGC	2 cut(s)	361, 370
HhaI	GCGC	2 cut(s)	19, 209
Hin1I	GRCGYC	1 cut(s)	372
Hin1II	CATG	5 cut(s)	33, 99, 119, 164, 283
Hin6I	GCGC	2 cut(s)	17, 207
HinP1I	GCGC	2 cut(s)	17, 207
HpaII	CCGG	2 cut(s)	210, 402
HphI	GGTGA	1 cut(s)	388
Hpy188I	TCNGA	1 cut(s)	388
Hpy188III	TCNNGA	4 cut(s)	226, 302, 325, 497
Hpy99I	CGWCG	2 cut(s)	272, 326
HpyCH4III	ACNGT	3 cut(s)	38, 322, 349
HpyCH4V	TGCA	1 cut(s)	204
HpyF10VI	GCNNNNNNNGC	3 cut(s)	74, 157, 378
HpyF3I	CTNAG	1 cut(s)	377
Hsp92I	GRCGYC	1 cut(s)	372
Hsp92II	CATG	5 cut(s)	33, 99, 119, 164, 283
HspAI	GCGC	2 cut(s)	17, 207
KroI	GCCGGC	1 cut(s)	401
KroNI	GCCGGC	1 cut(s)	403
Kzo9I	GATC	1 cut(s)	213
Lsp1109I	GCAGC	4 cut(s)	42, 64, 216, 263
MabI	ACCWGGT	1 cut(s)	431
MaeIII	GTNAC	3 cut(s)	32, 288, 394
MalI	GATC	1 cut(s)	215
MboI	GATC	1 cut(s)	213
MboII	GAAGA	2 cut(s)	275, 503
MflI	RGATCY	1 cut(s)	213
MhlI	GDGCHC	2 cut(s)	103, 428
MluCI	AATT	3 cut(s)	461, 486, 491
MnlI	CCTC	9 cut(s)	5, 147, 250, 265, 288, 298, 351, 386, 422
MreI	CGCCGGCG	1 cut(s)	401
MroNI	GCCGGC	1 cut(s)	401
MslI	CAYNNNNRTG	1 cut(s)	165
MspA1I	CMGCKG	1 cut(s)	254
MspI	CCGG	2 cut(s)	210, 402
MspR9I	CCNGG	2 cut(s)	211, 433
MvaI	CCWGG	1 cut(s)	433
MwoI	GCNNNNNNNGC	3 cut(s)	74, 157, 378
NaeI	GCCGGC	1 cut(s)	403
NciI	CCSGG	1 cut(s)	211
NdeII	GATC	1 cut(s)	213
NgoMIV	GCCGGC	1 cut(s)	401
NlaIII	CATG	5 cut(s)	33, 99, 119, 164, 283
NlaIV	GGNNCC	3 cut(s)	172, 224, 319
NmuCI	GTSAC	3 cut(s)	32, 288, 394
NspI	RCATGY	2 cut(s)	33, 164
PcsI	WCGNNNNNNNCGW	1 cut(s)	273
PdiI	GCCGGC	1 cut(s)	403
PkrI	GCNGC	4 cut(s)	57, 79, 206, 253
PpuMI	RGGWCCY	1 cut(s)	171
Psp5II	RGGWCCY	1 cut(s)	171
Psp6I	CCWGG	1 cut(s)	431
PspGI	CCWGG	1 cut(s)	431
PspN4I	GGNNCC	3 cut(s)	172, 224, 319
PspPI	GGNCC	3 cut(s)	171, 223, 338
PspPPI	RGGWCCY	1 cut(s)	171
PstI	CTGCAG	1 cut(s)	206
PsuI	RGATCY	1 cut(s)	213
RsaI	GTAC	1 cut(s)	443
RsaNI	GTAC	1 cut(s)	442
RseI	CAYNNNNRTG	1 cut(s)	165
SatI	GCNGC	4 cut(s)	56, 78, 205, 252
Sau3AI	GATC	1 cut(s)	213
Sau96I	GGNCC	3 cut(s)	171, 223, 338
ScrFI	CCNGG	2 cut(s)	211, 433
SduI	GDGCHC	2 cut(s)	103, 428
SetI	ASST	6 cut(s)	16, 75, 193, 261, 414, 434
SexAI	ACCWGGT	1 cut(s)	431
SfcI	CTRYAG	1 cut(s)	202
SgrAI	CRCCGGYG	1 cut(s)	401
SinI	GGWCC	2 cut(s)	171, 223
SmiMI	CAYNNNNRTG	1 cut(s)	165
Sse9I	AATT	3 cut(s)	461, 486, 491
SsiI	CCGC	5 cut(s)	87, 151, 254, 354, 399
StyD4I	CCNGG	2 cut(s)	209, 431
StyI	CCWWGG	1 cut(s)	174
TaaI	ACNGT	3 cut(s)	38, 322, 349
TaqI	TCGA	2 cut(s)	324, 498
TasI	AATT	3 cut(s)	461, 486, 491
TseFI	GTSAC	3 cut(s)	32, 288, 394
TseI	GCWGC	4 cut(s)	55, 77, 204, 251
Tsp45I	GTSAC	3 cut(s)	32, 288, 394
TspDTI	ATGAA	2 cut(s)	17, 84
TspGWI	ACGGA	1 cut(s)	456
VpaK11BI	GGWCC	2 cut(s)	171, 223
XceI	RCATGY	2 cut(s)	33, 164

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.