Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0002607

Physical Location & Seq

Genomic Coordinates Forward (+)

26957915 .. 26959557

Gene Structure 1643 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G67590.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 465 bp

ATGGCGCTTTGTGCTACTACTCAAAGGACTATCCGTATAGCGGCGACGCTCCGGCGTGTTGCTCGACCTTTCGCTACTGACGCGGTGGTTGAGTCGGATTACAAGCGTGGTGAGATCGGTAAGGTCTCCGGAATCCCAGAGGAGCATCTTTCTCGCAAGGTGATAATATACTCACCTGCTAGAACAGCTACCCAGTCAGGATCTGGAAAACTCGGAAAATGGAAGATTAACTTCGTCTCCACCTTAAAGTGGGAGAATCCGTTGATGGGATGGACTTCTACAGGTGACCCCTATGCTAATGTTGGTGACTCTGCTCTTGCTTTTGATTCTGAAGAAGCTGCTAAGTCTTTTGCTGAGCGTCATGGTTGGGATTATAAGGTCAAGAAGCCCAACACACCATTATTGAAGGTCAAGTCTTACTCGGACAACTTCAAGTGGAAAGGCAATCCTCAACCAGAAAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003954 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005746 GO:0005747 GO:0006950 GO:0006970 GO:0008137 GO:0008150 GO:0008152 GO:0009266 GO:0009409 GO:0009628 GO:0009631 GO:0016020 GO:0016491 GO:0016651 GO:0016655 GO:0019866 GO:0030964 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0032991 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0045271 GO:0046872 GO:0046914 GO:0050136 GO:0050896 GO:0050897 GO:0055114 GO:0070469 GO:0098796 GO:0098798 GO:0098800 GO:0098803 GO:1902494 GO:1990204

KEGG Pathways

Metabolic & Signaling

ko00190 ko01100 ko04714 ko04723 ko04932 ko05010 ko05012 ko05016 map00190 map01100 map04714 map04723 map04932 map05010 map05012 map05016

Pfam Domains

Protein Families

ETC_C1_NDUFA4

Protein Analysis

154

Amino Acids

17.13

Weight (kDa)

9.65

Isoelectric Point (pI)

31.09

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NDUS4	PF04800	53 - 148	1.5e-32	NADH dehydrogenase ubiquinone Fe-S protein 4

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002607)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G67590
fragaria_vesca	FvH4_1g17800 FvH4_2g32930
malus_domestica	MD02G1187000.v1.1 MD08G1080900.v1.1 MD15G1067900.v1.1 MD15G1298100.v1.1
prunus_persica	Prupe.1G421800_v2.0.a1 Prupe.1G421800_v2.0.a1 Prupe.1G421800_v2.0.a1 Prupe.1G421800_v2.0.a1 Prupe.6G219700_v2.0.a1 Prupe.6G219700_v2.0.a1
pyrus_communis	pycom02g15200 pycom08g06670 pycom15g06430 pycom15g26080
rosa_chinensis	RchiOBHm_Chr2g0108251 RchiOBHm_Chr6g0309771
rosa_laevigata	RLG00000010537 RLG00000017650
rosa_multiflora	Rmu_sc0007406.1_g000008 Rmu_sc0013358.1_g000002 Rmu_ssc0000373.1_g000009
rosa_roxburghii	Rroxscaffold_2G00135450 Rroxscaffold_7G00159200
rosa_rugosa	Rorug02G0151500 Rorug02G0151600.1 Rorug06G0374300 Rorug06G0374400
rosa_samantha	Rh2AG200000 Rh2BG212700 Rh2CG204700 Rh2DG207600 Rh6AG487900 Rh6BG497500 Rh6CG502300 Rh6DG488500
rosa_wichuraiana	Rw2G015920 Rw6G042490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	375
AarI	CACCTGC	1 cut(s)	184
Acc36I	ACCTGC	1 cut(s)	184
AccII	CGCG	1 cut(s)	83
AccIII	TCCGGA	1 cut(s)	128
AciI	CCGC	2 cut(s)	41, 83
AclWI	GGATC	1 cut(s)	208
AcuI	CTGAAG	1 cut(s)	351
AfiI	CCNNNNNNNGG	3 cut(s)	40, 249, 266
AgsI	TTSAA	2 cut(s)	406, 433
AluBI	AGCT	2 cut(s)	188, 338
AluI	AGCT	2 cut(s)	188, 338
Alw26I	GTCTC	2 cut(s)	130, 241
AlwI	GGATC	1 cut(s)	208
AlwNI	CAGNNNCTG	1 cut(s)	203
Aor13HI	TCCGGA	1 cut(s)	128
ApeKI	GCWGC	1 cut(s)	338
AspLEI	GCGC	1 cut(s)	7
AsuHPI	GGTGA	5 cut(s)	122, 165, 172, 296, 317
BbvI	GCAGC	1 cut(s)	325
BccI	CCATC	2 cut(s)	259, 264
BcgI	CGANNNNNNTGC	2 cut(s)	134, 168
BcoDI	GTCTC	2 cut(s)	130, 241
BfaI	CTAG	1 cut(s)	180
BfmI	CTRYAG	1 cut(s)	279
BfoI	RGCGCY	1 cut(s)	8
BfuAI	ACCTGC	1 cut(s)	184
BisI	GCNGC	2 cut(s)	42, 339
BlpI	GCTNAGC	1 cut(s)	354
BlsI	GCNGC	2 cut(s)	43, 340
BmrI	ACTGGG	1 cut(s)	187
BmsI	GCATC	1 cut(s)	154
BmuI	ACTGGG	1 cut(s)	187
Bpu1102I	GCTNAGC	1 cut(s)	354
BsaI	GGTCTC	1 cut(s)	130
BsaWI	WCCGGW	1 cut(s)	128
BsaXI	ACNNNNNCTCC	4 cut(s)	221, 245, 251, 275
Bsc4I	CCNNNNNNNGG	3 cut(s)	40, 249, 266
Bse1I	ACTGG	1 cut(s)	193
BseAI	TCCGGA	1 cut(s)	128
BseGI	GGATG	1 cut(s)	275
BseLI	CCNNNNNNNGG	3 cut(s)	40, 249, 266
BseMII	CTCAG	1 cut(s)	345
BseNI	ACTGG	1 cut(s)	193
BseRI	GAGGAG	1 cut(s)	155
BseXI	GCAGC	1 cut(s)	325
Bsh1236I	CGCG	1 cut(s)	83
BsiSI	CCGG	2 cut(s)	52, 129
BslI	CCNNNNNNNGG	3 cut(s)	40, 249, 266
BsmAI	GTCTC	2 cut(s)	130, 241
BsmBI	CGTCTC	1 cut(s)	241
Bso31I	GGTCTC	1 cut(s)	130
Bsp13I	TCCGGA	1 cut(s)	128
Bsp143I	GATC	2 cut(s)	114, 200
Bsp1720I	GCTNAGC	1 cut(s)	354
BspACI	CCGC	2 cut(s)	41, 83
BspCNI	CTCAG	1 cut(s)	346
BspEI	TCCGGA	1 cut(s)	128
BspFNI	CGCG	1 cut(s)	83
BspMI	ACCTGC	1 cut(s)	184
BspPI	GGATC	1 cut(s)	208
BspTNI	GGTCTC	1 cut(s)	130
BsrI	ACTGG	1 cut(s)	193
BssMI	GATC	2 cut(s)	114, 200
BstDEI	CTNAG	2 cut(s)	342, 354
BstEII	GGTNACC	1 cut(s)	284
BstF5I	GGATG	1 cut(s)	275
BstFNI	CGCG	1 cut(s)	83
BstH2I	RGCGCY	1 cut(s)	8
BstHHI	GCGC	1 cut(s)	7
BstKTI	GATC	2 cut(s)	117, 203
BstMAI	GTCTC	2 cut(s)	130, 241
BstMBI	GATC	2 cut(s)	114, 200
BstMWI	GCNNNNNNNGC	3 cut(s)	11, 80, 185
BstPI	GGTNACC	1 cut(s)	284
BstSFI	CTRYAG	1 cut(s)	279
BstUI	CGCG	1 cut(s)	83
BstV1I	GCAGC	1 cut(s)	325
BstX2I	RGATCY	1 cut(s)	200
BstYI	RGATCY	1 cut(s)	200
BtsCI	GGATG	1 cut(s)	275
BveI	ACCTGC	1 cut(s)	184
CaiI	CAGNNNCTG	1 cut(s)	203
CfoI	GCGC	1 cut(s)	7
CseI	GACGC	3 cut(s)	55, 89, 347
CviAII	CATG	1 cut(s)	362
CviJI	RGCY	3 cut(s)	188, 338, 388
CviKI_1	RGCY	3 cut(s)	188, 338, 388
DdeI	CTNAG	2 cut(s)	342, 354
DpnI	GATC	2 cut(s)	116, 202
DpnII	GATC	2 cut(s)	114, 200
Eco31I	GGTCTC	1 cut(s)	130
Eco57I	CTGAAG	1 cut(s)	351
Eco91I	GGTNACC	1 cut(s)	284
EcoO65I	GGTNACC	1 cut(s)	284
Esp3I	CGTCTC	1 cut(s)	241
FaeI	CATG	1 cut(s)	365
FaiI	YATR	5 cut(s)	38, 169, 294, 363, 375
FalI	AAGNNNNNCTT	2 cut(s)	215, 247
FatI	CATG	1 cut(s)	361
Fnu4HI	GCNGC	2 cut(s)	42, 339
FokI	GGATG	1 cut(s)	282
Fsp4HI	GCNGC	2 cut(s)	42, 339
FspBI	CTAG	1 cut(s)	180
GlaI	GCGC	1 cut(s)	6
GluI	GCNGC	2 cut(s)	42, 339
HaeII	RGCGCY	1 cut(s)	8
HapII	CCGG	2 cut(s)	52, 129
HgaI	GACGC	3 cut(s)	55, 89, 347
HhaI	GCGC	1 cut(s)	7
Hin1II	CATG	1 cut(s)	365
Hin6I	GCGC	1 cut(s)	5
HinP1I	GCGC	1 cut(s)	5
HinfI	GANTC	5 cut(s)	92, 132, 256, 308, 326
HpaII	CCGG	2 cut(s)	52, 129
HphI	GGTGA	5 cut(s)	122, 165, 172, 296, 317
Hpy188I	TCNGA	4 cut(s)	97, 215, 331, 424
Hpy188III	TCNNGA	4 cut(s)	129, 198, 204, 382
Hpy99I	CGWCG	1 cut(s)	49
HpyAV	CCTTC	1 cut(s)	400
HpyF10VI	GCNNNNNNNGC	3 cut(s)	11, 80, 185
HpyF3I	CTNAG	2 cut(s)	342, 354
Hsp92II	CATG	1 cut(s)	365
HspAI	GCGC	1 cut(s)	5
Kpn2I	TCCGGA	1 cut(s)	128
Kzo9I	GATC	2 cut(s)	114, 200
LmnI	GCTCC	2 cut(s)	54, 142
LpnPI	CCDG	8 cut(s)	65, 142, 150, 183, 189, 189, 206, 267
Lsp1109I	GCAGC	1 cut(s)	325
LweI	GCATC	1 cut(s)	154
MaeI	CTAG	1 cut(s)	180
MaeIII	GTNAC	2 cut(s)	284, 305
MalI	GATC	2 cut(s)	116, 202
MboI	GATC	2 cut(s)	114, 200
MboII	GAAGA	2 cut(s)	235, 344
MflI	RGATCY	1 cut(s)	200
MlyI	GAGTC	2 cut(s)	101, 302
MmeI	TCCRAC	1 cut(s)	75
MnlI	CCTC	2 cut(s)	133, 459
MroI	TCCGGA	1 cut(s)	128
MseI	TTAA	2 cut(s)	228, 245
MspI	CCGG	2 cut(s)	52, 129
MvnI	CGCG	1 cut(s)	83
MwoI	GCNNNNNNNGC	3 cut(s)	11, 80, 185
NdeII	GATC	2 cut(s)	114, 200
NlaIII	CATG	1 cut(s)	365
NmuCI	GTSAC	2 cut(s)	284, 305
PaqCI	CACCTGC	1 cut(s)	184
PfeI	GAWTC	3 cut(s)	132, 256, 326
PkrI	GCNGC	2 cut(s)	43, 340
PleI	GAGTC	2 cut(s)	100, 302
PpsI	GAGTC	2 cut(s)	100, 302
PsiI	TTATAA	1 cut(s)	375
PspEI	GGTNACC	1 cut(s)	284
PstNI	CAGNNNCTG	1 cut(s)	203
PsuI	RGATCY	1 cut(s)	200
SaqAI	TTAA	2 cut(s)	228, 245
SatI	GCNGC	2 cut(s)	42, 339
Sau3AI	GATC	2 cut(s)	114, 200
SchI	GAGTC	2 cut(s)	101, 302
SfaNI	GCATC	1 cut(s)	154
SfcI	CTRYAG	1 cut(s)	279
SsiI	CCGC	2 cut(s)	41, 83
SspMI	CTAG	1 cut(s)	180
TaqI	TCGA	1 cut(s)	64
TauI	GCSGC	1 cut(s)	44
TfiI	GAWTC	3 cut(s)	132, 256, 326
Tru1I	TTAA	2 cut(s)	228, 245
Tru9I	TTAA	2 cut(s)	228, 245
TseFI	GTSAC	2 cut(s)	284, 305
TseI	GCWGC	1 cut(s)	338
Tsp45I	GTSAC	2 cut(s)	284, 305
TspGWI	ACGGA	2 cut(s)	23, 249
XcmI	CCANNNNNNNNNTGG	1 cut(s)	200
XspI	CTAG	1 cut(s)	180

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.