Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0002607

Physical Location & Seq

Genomic Coordinates Reverse (-)

13419314 .. 13420608

Gene Structure 1295 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0151500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 489 bp

ATGGATTCCTTTAGAGGTGCAGAACATGAGGAGCGGAAAGCAAGGGCCTTAGCTGCAGCTGCCACGGAGTTGGAAAGACTTCTCAGAAAGGAAGATTTTGGTAGAATGAAGATTATAAGGTATTTTTCTAGCAATGCTTCTCAAGTTCTCGTTAACCGAGCATTCTGGGACAAGAGATCAGTCAAGAAGTCAATGGTGATGCACAGATTGCGAGGACTCAGGAGTTATGTGTTCAAAATTATGGGAGGCTGTGACAAGAAATTGTTTCCTTTGAAGCAAGGAGTGTTAACCCCAGGGTGTGTTCGCCTTTTGCTCCACGGGGACCTTTTTGTGTTGAACTTCGTCATTGTTAAGAAAGGTGACAATGACCTTCCTGGACTGACTGATGTTGAAAAGCCAACAGTGAGAGGTCCAAAGAGGGCTTCCAAGATCCACAAGTTATTTAACCTCACCAAGGACGATGATGGTAGGAAGTATGTCAACACTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003954 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005746 GO:0005747 GO:0006950 GO:0006970 GO:0008137 GO:0008150 GO:0008152 GO:0009266 GO:0009409 GO:0009628 GO:0009631 GO:0016020 GO:0016491 GO:0016651 GO:0016655 GO:0019866 GO:0030964 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0032991 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0045271 GO:0046872 GO:0046914 GO:0050136 GO:0050896 GO:0050897 GO:0055114 GO:0070469 GO:0098796 GO:0098798 GO:0098800 GO:0098803 GO:1902494 GO:1990204

KEGG Pathways

Metabolic & Signaling

ko00190 ko01100 ko04714 ko04723 ko04932 ko05010 ko05012 ko05016 map00190 map01100 map04714 map04723 map04932 map05010 map05012 map05016

Pfam Domains

Protein Families

ETC_C1_NDUFA4

Protein Analysis

162

Amino Acids

18.53

Weight (kDa)

10.2

Isoelectric Point (pI)

28.95

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_S6e	PF01092	72 - 107	4.5e-06	Ribosomal protein S6e

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0002607)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G67590
fragaria_vesca	FvH4_1g17800 FvH4_2g32930
malus_domestica	MD02G1187000.v1.1 MD08G1080900.v1.1 MD15G1067900.v1.1 MD15G1298100.v1.1
prunus_persica	Prupe.1G421800_v2.0.a1 Prupe.1G421800_v2.0.a1 Prupe.1G421800_v2.0.a1 Prupe.1G421800_v2.0.a1 Prupe.6G219700_v2.0.a1 Prupe.6G219700_v2.0.a1
pyrus_communis	pycom02g15200 pycom08g06670 pycom15g06430 pycom15g26080
rosa_chinensis	RchiOBHm_Chr2g0108251 RchiOBHm_Chr6g0309771
rosa_laevigata	RLG00000010537 RLG00000017650
rosa_multiflora	Rmu_sc0007406.1_g000008 Rmu_sc0013358.1_g000002 Rmu_ssc0000373.1_g000009
rosa_roxburghii	Rroxscaffold_2G00135450 Rroxscaffold_7G00159200
rosa_rugosa	Rorug02G0151500 Rorug02G0151600.1 Rorug06G0374300 Rorug06G0374400
rosa_samantha	Rh2AG200000 Rh2BG212700 Rh2CG204700 Rh2DG207600 Rh6AG487900 Rh6BG497500 Rh6CG502300 Rh6DG488500
rosa_wichuraiana	Rw2G015920 Rw6G042490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	116
AccBSI	CCGCTC	1 cut(s)	34
AciI	CCGC	1 cut(s)	34
AclWI	GGATC	1 cut(s)	424
AfiI	CCNNNNNNNGG	1 cut(s)	454
AgsI	TTSAA	4 cut(s)	235, 274, 337, 392
AjnI	CCWGG	2 cut(s)	292, 373
AjuI	GAANNNNNNNTTGG	2 cut(s)	406, 438
AluBI	AGCT	2 cut(s)	53, 59
AluI	AGCT	2 cut(s)	53, 59
AlwI	GGATC	1 cut(s)	424
AoxI	GGCC	1 cut(s)	45
ApeKI	GCWGC	3 cut(s)	53, 56, 59
Asp700I	GAANNNNTTC	1 cut(s)	78
AspS9I	GGNCC	3 cut(s)	45, 322, 410
AsuHPI	GGTGA	3 cut(s)	208, 371, 442
AvaII	GGWCC	2 cut(s)	322, 410
BbvI	GCAGC	3 cut(s)	40, 46, 68
BccI	CCATC	1 cut(s)	458
BciT130I	CCWGG	2 cut(s)	294, 375
BfaI	CTAG	1 cut(s)	129
BfmI	CTRYAG	1 cut(s)	54
BisI	GCNGC	3 cut(s)	54, 57, 60
BlsI	GCNGC	3 cut(s)	55, 58, 61
Bme1390I	CCNGG	2 cut(s)	294, 375
Bme18I	GGWCC	2 cut(s)	322, 410
BmgT120I	GGNCC	3 cut(s)	45, 322, 410
BmiI	GGNNCC	1 cut(s)	323
BmrFI	CCNGG	2 cut(s)	294, 375
BmsI	GCATC	1 cut(s)	189
Bpu10I	CCTNAGC	1 cut(s)	49
BpuEI	CTTGAG	1 cut(s)	126
BsaJI	CCNNGG	5 cut(s)	63, 292, 293, 316, 453
Bsc4I	CCNNNNNNNGG	1 cut(s)	454
Bse3DI	GCAATG	1 cut(s)	139
BseBI	CCWGG	2 cut(s)	294, 375
BseDI	CCNNGG	5 cut(s)	63, 292, 293, 316, 453
BseLI	CCNNNNNNNGG	1 cut(s)	454
BseMI	GCAATG	1 cut(s)	139
BseMII	CTCAG	2 cut(s)	97, 232
BseRI	GAGGAG	1 cut(s)	44
BseXI	GCAGC	3 cut(s)	40, 46, 68
BsgI	GTGCAG	1 cut(s)	39
BshFI	GGCC	1 cut(s)	47
BslFI	GGGAC	2 cut(s)	182, 335
BslI	CCNNNNNNNGG	1 cut(s)	454
BsmFI	GGGAC	2 cut(s)	182, 335
BsmI	GAATGC	1 cut(s)	161
BsnI	GGCC	1 cut(s)	47
Bsp143I	GATC	2 cut(s)	176, 429
BspACI	CCGC	1 cut(s)	34
BspANI	GGCC	1 cut(s)	47
BspCNI	CTCAG	2 cut(s)	96, 231
BspLI	GGNNCC	1 cut(s)	323
BspMAI	CTGCAG	1 cut(s)	58
BspPI	GGATC	1 cut(s)	424
BsrBI	CCGCTC	1 cut(s)	34
BsrDI	GCAATG	1 cut(s)	139
BssECI	CCNNGG	5 cut(s)	63, 292, 293, 316, 453
BssMI	GATC	2 cut(s)	176, 429
BssT1I	CCWWGG	1 cut(s)	453
Bst2UI	CCWGG	2 cut(s)	294, 375
Bst4CI	ACNGT	1 cut(s)	403
BstAPI	GCANNNNNTGC	1 cut(s)	208
BstDEI	CTNAG	3 cut(s)	49, 83, 218
BstDSI	CCRYGG	2 cut(s)	63, 316
BstENI	CCTNNNNNAGG	1 cut(s)	452
BstKTI	GATC	2 cut(s)	179, 432
BstMBI	GATC	2 cut(s)	176, 429
BstMWI	GCNNNNNNNGC	3 cut(s)	53, 59, 208
BstNI	CCWGG	2 cut(s)	294, 375
BstSCI	CCNGG	2 cut(s)	292, 373
BstSFI	CTRYAG	1 cut(s)	54
BstV1I	GCAGC	3 cut(s)	40, 46, 68
BstX2I	RGATCY	1 cut(s)	429
BstXI	CCANNNNNNTGG	1 cut(s)	70
BstYI	RGATCY	1 cut(s)	429
BsuRI	GGCC	1 cut(s)	47
BtgI	CCRYGG	2 cut(s)	63, 316
BtsIMutI	CAGTG	1 cut(s)	408
Cfr13I	GGNCC	3 cut(s)	45, 322, 410
CviAII	CATG	1 cut(s)	26
CviJI	RGCY	6 cut(s)	47, 53, 59, 249, 397, 422
CviKI_1	RGCY	6 cut(s)	47, 53, 59, 249, 397, 422
DdeI	CTNAG	3 cut(s)	49, 83, 218
DpnI	GATC	2 cut(s)	178, 431
DpnII	GATC	2 cut(s)	176, 429
Eco130I	CCWWGG	1 cut(s)	453
Eco47I	GGWCC	2 cut(s)	322, 410
EcoNI	CCTNNNNNAGG	1 cut(s)	452
EcoO109I	RGGNCCY	2 cut(s)	45, 322
EcoRII	CCWGG	2 cut(s)	292, 373
EcoT14I	CCWWGG	1 cut(s)	453
ErhI	CCWWGG	1 cut(s)	453
FaeI	CATG	1 cut(s)	29
FaiI	YATR	5 cut(s)	27, 116, 228, 242, 477
FaqI	GGGAC	2 cut(s)	182, 335
FatI	CATG	1 cut(s)	25
Fnu4HI	GCNGC	3 cut(s)	54, 57, 60
Fsp4HI	GCNGC	3 cut(s)	54, 57, 60
FspBI	CTAG	1 cut(s)	129
GluI	GCNGC	3 cut(s)	54, 57, 60
HaeIII	GGCC	1 cut(s)	47
Hin1II	CATG	1 cut(s)	29
HincII	GTYRAC	3 cut(s)	154, 288, 481
HindII	GTYRAC	3 cut(s)	154, 288, 481
HinfI	GANTC	2 cut(s)	5, 216
HpaI	GTTAAC	2 cut(s)	154, 288
HphI	GGTGA	3 cut(s)	208, 371, 442
Hpy166II	GTNNAC	3 cut(s)	154, 288, 481
Hpy188I	TCNGA	1 cut(s)	86
Hpy188III	TCNNGA	2 cut(s)	184, 220
Hpy8I	GTNNAC	3 cut(s)	154, 288, 481
HpyAV	CCTTC	1 cut(s)	380
HpyCH4III	ACNGT	1 cut(s)	403
HpyCH4V	TGCA	3 cut(s)	20, 56, 202
HpyF10VI	GCNNNNNNNGC	3 cut(s)	53, 59, 208
HpyF3I	CTNAG	3 cut(s)	49, 83, 218
Hsp92II	CATG	1 cut(s)	29
KspAI	GTTAAC	2 cut(s)	154, 288
Kzo9I	GATC	2 cut(s)	176, 429
LmnI	GCTCC	2 cut(s)	31, 318
LpnPI	CCDG	6 cut(s)	151, 205, 279, 306, 360, 387
Lsp1109I	GCAGC	3 cut(s)	40, 46, 68
LweI	GCATC	1 cut(s)	189
MaeI	CTAG	1 cut(s)	129
MaeIII	GTNAC	2 cut(s)	251, 359
MalI	GATC	2 cut(s)	178, 431
MbiI	CCGCTC	1 cut(s)	34
MboI	GATC	2 cut(s)	176, 429
MboII	GAAGA	2 cut(s)	104, 121
MflI	RGATCY	1 cut(s)	429
MluCI	AATT	2 cut(s)	237, 260
MlyI	GAGTC	1 cut(s)	210
MmeI	TCCRAC	1 cut(s)	51
MnlI	CCTC	7 cut(s)	8, 22, 206, 239, 401, 411, 458
MroXI	GAANNNNTTC	1 cut(s)	78
MseI	TTAA	5 cut(s)	153, 287, 351, 444, 487
MspA1I	CMGCKG	1 cut(s)	59
MspR9I	CCNGG	2 cut(s)	294, 375
Mva1269I	GAATGC	1 cut(s)	161
MvaI	CCWGG	2 cut(s)	294, 375
MwoI	GCNNNNNNNGC	3 cut(s)	53, 59, 208
NdeII	GATC	2 cut(s)	176, 429
NlaIII	CATG	1 cut(s)	29
NlaIV	GGNNCC	1 cut(s)	323
NmuCI	GTSAC	2 cut(s)	251, 359
PasI	CCCWGGG	1 cut(s)	293
PctI	GAATGC	1 cut(s)	161
PdmI	GAANNNNTTC	1 cut(s)	78
PfeI	GAWTC	1 cut(s)	5
PfoI	TCCNGGA	1 cut(s)	373
PkrI	GCNGC	3 cut(s)	55, 58, 61
PleI	GAGTC	1 cut(s)	210
PpsI	GAGTC	1 cut(s)	210
PpuMI	RGGWCCY	1 cut(s)	322
PsiI	TTATAA	1 cut(s)	116
Psp5II	RGGWCCY	1 cut(s)	322
Psp6I	CCWGG	2 cut(s)	292, 373
PspGI	CCWGG	2 cut(s)	292, 373
PspN4I	GGNNCC	1 cut(s)	323
PspPI	GGNCC	3 cut(s)	45, 322, 410
PspPPI	RGGWCCY	1 cut(s)	322
PstI	CTGCAG	1 cut(s)	58
PsuI	RGATCY	1 cut(s)	429
PvuII	CAGCTG	1 cut(s)	59
SaqAI	TTAA	5 cut(s)	153, 287, 351, 444, 487
SatI	GCNGC	3 cut(s)	54, 57, 60
Sau3AI	GATC	2 cut(s)	176, 429
Sau96I	GGNCC	3 cut(s)	45, 322, 410
SchI	GAGTC	1 cut(s)	210
ScrFI	CCNGG	2 cut(s)	294, 375
SetI	ASST	9 cut(s)	19, 55, 61, 122, 327, 361, 372, 412, 450
SfaNI	GCATC	1 cut(s)	189
SfcI	CTRYAG	1 cut(s)	54
SinI	GGWCC	2 cut(s)	322, 410
SmlI	CTYRAG	1 cut(s)	141
SmoI	CTYRAG	1 cut(s)	141
Sse9I	AATT	2 cut(s)	237, 260
SsiI	CCGC	1 cut(s)	34
SspMI	CTAG	1 cut(s)	129
StyD4I	CCNGG	2 cut(s)	292, 373
StyI	CCWWGG	1 cut(s)	453
TaaI	ACNGT	1 cut(s)	403
TasI	AATT	2 cut(s)	237, 260
TfiI	GAWTC	1 cut(s)	5
Tru1I	TTAA	5 cut(s)	153, 287, 351, 444, 487
Tru9I	TTAA	5 cut(s)	153, 287, 351, 444, 487
TscAI	CASTG	1 cut(s)	408
TseFI	GTSAC	2 cut(s)	251, 359
TseI	GCWGC	3 cut(s)	53, 56, 59
Tsp45I	GTSAC	2 cut(s)	251, 359
TspDTI	ATGAA	1 cut(s)	122
TspGWI	ACGGA	1 cut(s)	80
TspRI	CASTG	1 cut(s)	408
VpaK11BI	GGWCC	2 cut(s)	322, 410
XagI	CCTNNNNNAGG	1 cut(s)	452
XmnI	GAANNNNTTC	1 cut(s)	78
XspI	CTAG	1 cut(s)	129

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.