Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0002607

Physical Location & Seq

Genomic Coordinates Reverse (-)

73015340 .. 73017706

Gene Structure 2367 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00135450.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 435 bp

ATGGCGAGCTCCCTGCAACGCATCTCGAGCCACGCTCGTCTTCTCCGGACCGCTATCGCTTCTGGGTCCAGACCATTCTCGGCCGACGCTTTGGTCGAGTACAGGCCCGGCGAGATCGGAAGAGTCTCCGGCATCCCCGATGAACATCTCCGCAGAAAGGTTGTGATATACTCACCTGCAAGAACTGCGAGTCAACAAGGATCAGGGAAAGTTGGCAAGTGGAAGATTAACTTTGTGTCCACACAGAAGTGGGAGAATCCATTGATGGGCTGGACTTCAACTGGAGACCCTTATGCCAATGTTGGTGATTCCGCACTCGGTTTTGACAGCGAAGAAGCTGCAAAGTACTTTGCAGAGAACCATGGTTGGGATTATGTGGTGAAGTTATATGCTGACAACTTCAAGTGGAAGGGTCTCCCTAAAACTGAGGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003954 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005746 GO:0005747 GO:0006950 GO:0006970 GO:0008137 GO:0008150 GO:0008152 GO:0009266 GO:0009409 GO:0009628 GO:0009631 GO:0016020 GO:0016491 GO:0016651 GO:0016655 GO:0019866 GO:0030964 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0032991 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0045271 GO:0046872 GO:0046914 GO:0050136 GO:0050896 GO:0050897 GO:0055114 GO:0070469 GO:0098796 GO:0098798 GO:0098800 GO:0098803 GO:1902494 GO:1990204

KEGG Pathways

Metabolic & Signaling

ko00190 ko01100 ko04714 ko04723 ko04932 ko05010 ko05012 ko05016 map00190 map01100 map04714 map04723 map04932 map05010 map05012 map05016

Pfam Domains

Protein Families

ETC_C1_NDUFA4

Protein Analysis

144

Amino Acids

15.94

Weight (kDa)

9.36

Isoelectric Point (pI)

34.51

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NDUS4	PF04800	53 - 130	3.3e-24	NADH dehydrogenase ubiquinone Fe-S protein 4

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002607)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G67590
fragaria_vesca	FvH4_1g17800 FvH4_2g32930
malus_domestica	MD02G1187000.v1.1 MD08G1080900.v1.1 MD15G1067900.v1.1 MD15G1298100.v1.1
prunus_persica	Prupe.1G421800_v2.0.a1 Prupe.1G421800_v2.0.a1 Prupe.1G421800_v2.0.a1 Prupe.1G421800_v2.0.a1 Prupe.6G219700_v2.0.a1 Prupe.6G219700_v2.0.a1
pyrus_communis	pycom02g15200 pycom08g06670 pycom15g06430 pycom15g26080
rosa_chinensis	RchiOBHm_Chr2g0108251 RchiOBHm_Chr6g0309771
rosa_laevigata	RLG00000010537 RLG00000017650
rosa_multiflora	Rmu_sc0007406.1_g000008 Rmu_sc0013358.1_g000002 Rmu_ssc0000373.1_g000009
rosa_roxburghii	Rroxscaffold_2G00135450 Rroxscaffold_7G00159200
rosa_rugosa	Rorug02G0151500 Rorug02G0151600.1 Rorug06G0374300 Rorug06G0374400
rosa_samantha	Rh2AG200000 Rh2BG212700 Rh2CG204700 Rh2DG207600 Rh6AG487900 Rh6BG497500 Rh6CG502300 Rh6DG488500
rosa_wichuraiana	Rw2G015920 Rw6G042490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	184
AasI	GACNNNNNNGTC	1 cut(s)	92
Acc36I	ACCTGC	1 cut(s)	184
AccIII	TCCGGA	1 cut(s)	45
AciI	CCGC	3 cut(s)	51, 151, 312
AclWI	GGATC	1 cut(s)	208
AcoI	YGGCCR	1 cut(s)	81
AfaI	GTAC	2 cut(s)	101, 347
AfiI	CCNNNNNNNGG	3 cut(s)	157, 266, 367
AgsI	TTSAA	2 cut(s)	279, 403
AleI	CACNNNNGTG	1 cut(s)	247
AluBI	AGCT	2 cut(s)	9, 338
AluI	AGCT	2 cut(s)	9, 338
Alw21I	GWGCWC	1 cut(s)	11
Alw26I	GTCTC	3 cut(s)	130, 279, 419
AlwI	GGATC	1 cut(s)	208
Ama87I	CYCGRG	1 cut(s)	25
Aor13HI	TCCGGA	1 cut(s)	45
AoxI	GGCC	2 cut(s)	81, 104
ApeKI	GCWGC	1 cut(s)	338
AspS9I	GGNCC	3 cut(s)	48, 66, 105
AsuC2I	CCSGG	1 cut(s)	108
AsuHPI	GGTGA	3 cut(s)	165, 317, 391
AvaI	CYCGRG	1 cut(s)	25
AvaII	GGWCC	2 cut(s)	48, 66
BanII	GRGCYC	1 cut(s)	11
BbsI	GAAGAC	1 cut(s)	32
Bbv12I	GWGCWC	1 cut(s)	11
BbvI	GCAGC	1 cut(s)	325
BccI	CCATC	1 cut(s)	259
BcgI	CGANNNNNNTGC	3 cut(s)	29, 320, 354
BcnI	CCSGG	1 cut(s)	108
BcoDI	GTCTC	3 cut(s)	130, 279, 419
BfuAI	ACCTGC	1 cut(s)	184
BisI	GCNGC	1 cut(s)	339
BlsI	GCNGC	1 cut(s)	340
BmcAI	AGTACT	1 cut(s)	347
Bme1390I	CCNGG	1 cut(s)	108
Bme18I	GGWCC	2 cut(s)	48, 66
BmeT110I	CYCGRG	1 cut(s)	25
BmgT120I	GGNCC	3 cut(s)	48, 66, 105
BmiI	GGNNCC	1 cut(s)	67
BmrFI	CCNGG	1 cut(s)	108
BmsI	GCATC	2 cut(s)	30, 141
BpiI	GAAGAC	1 cut(s)	32
BplI	GAGNNNNNCTC	2 cut(s)	19, 51
BpmI	CTGGAG	1 cut(s)	303
BpuMI	CCSGG	1 cut(s)	108
BsaBI	GATNNNNATC	1 cut(s)	144
BsaI	GGTCTC	2 cut(s)	279, 419
BsaJI	CCNNGG	1 cut(s)	361
BsaWI	WCCGGW	1 cut(s)	45
Bsc4I	CCNNNNNNNGG	3 cut(s)	157, 266, 367
Bse1I	ACTGG	1 cut(s)	286
Bse8I	GATNNNNATC	1 cut(s)	144
BseAI	TCCGGA	1 cut(s)	45
BseDI	CCNNGG	1 cut(s)	361
BseGI	GGATG	1 cut(s)	132
BseJI	GATNNNNATC	1 cut(s)	144
BseLI	CCNNNNNNNGG	3 cut(s)	157, 266, 367
BseMII	CTCAG	1 cut(s)	417
BseNI	ACTGG	1 cut(s)	286
BseX3I	CGGCCG	1 cut(s)	81
BseXI	GCAGC	1 cut(s)	325
Bsh1285I	CGRYCG	1 cut(s)	84
BshFI	GGCC	2 cut(s)	83, 106
BsiEI	CGRYCG	1 cut(s)	84
BsiHKAI	GWGCWC	1 cut(s)	11
BsiHKCI	CYCGRG	1 cut(s)	25
BsiSI	CCGG	3 cut(s)	46, 108, 129
BslI	CCNNNNNNNGG	3 cut(s)	157, 266, 367
BsmAI	GTCTC	3 cut(s)	130, 279, 419
BsnI	GGCC	2 cut(s)	83, 106
Bso31I	GGTCTC	2 cut(s)	279, 419
BsoBI	CYCGRG	1 cut(s)	25
Bsp1286I	GDGCHC	1 cut(s)	11
Bsp13I	TCCGGA	1 cut(s)	45
Bsp143I	GATC	2 cut(s)	114, 200
Bsp19I	CCATGG	1 cut(s)	361
BspACI	CCGC	3 cut(s)	51, 151, 312
BspANI	GGCC	2 cut(s)	83, 106
BspCNI	CTCAG	1 cut(s)	418
BspEI	TCCGGA	1 cut(s)	45
BspLI	GGNNCC	1 cut(s)	67
BspMI	ACCTGC	1 cut(s)	184
BspPI	GGATC	1 cut(s)	208
BspTNI	GGTCTC	2 cut(s)	279, 419
BsrI	ACTGG	1 cut(s)	286
BssECI	CCNNGG	1 cut(s)	361
BssMI	GATC	2 cut(s)	114, 200
BssT1I	CCWWGG	1 cut(s)	361
Bst6I	CTCTTC	1 cut(s)	115
BstAPI	GCANNNNNTGC	1 cut(s)	185
BstC8I	GCNNGC	1 cut(s)	7
BstDEI	CTNAG	1 cut(s)	426
BstDSI	CCRYGG	1 cut(s)	361
BstF5I	GGATG	1 cut(s)	132
BstKTI	GATC	2 cut(s)	117, 203
BstMAI	GTCTC	3 cut(s)	130, 279, 419
BstMBI	GATC	2 cut(s)	114, 200
BstMCI	CGRYCG	1 cut(s)	84
BstMWI	GCNNNNNNNGC	2 cut(s)	27, 185
BstSCI	CCNGG	1 cut(s)	106
BstV1I	GCAGC	1 cut(s)	325
BstV2I	GAAGAC	1 cut(s)	32
BstZI	CGGCCG	1 cut(s)	81
BsuRI	GGCC	2 cut(s)	83, 106
BtgI	CCRYGG	1 cut(s)	361
BtsCI	GGATG	1 cut(s)	132
BveI	ACCTGC	1 cut(s)	184
Cac8I	GCNNGC	1 cut(s)	7
Cfr13I	GGNCC	3 cut(s)	48, 66, 105
CpoI	CGGWCCG	1 cut(s)	48
CseI	GACGC	1 cut(s)	95
Csp6I	GTAC	2 cut(s)	100, 346
CspI	CGGWCCG	1 cut(s)	48
CviAII	CATG	2 cut(s)	362, 432
CviJI	RGCY	6 cut(s)	9, 30, 83, 106, 270, 338
CviKI_1	RGCY	6 cut(s)	9, 30, 83, 106, 270, 338
CviQI	GTAC	2 cut(s)	100, 346
DdeI	CTNAG	1 cut(s)	426
DpnI	GATC	2 cut(s)	116, 202
DpnII	GATC	2 cut(s)	114, 200
DrdI	GACNNNNNNGTC	1 cut(s)	92
DseDI	GACNNNNNNGTC	1 cut(s)	92
EaeI	YGGCCR	1 cut(s)	81
EagI	CGGCCG	1 cut(s)	81
Eam1104I	CTCTTC	1 cut(s)	115
EarI	CTCTTC	1 cut(s)	115
Ecl136II	GAGCTC	1 cut(s)	9
EclXI	CGGCCG	1 cut(s)	81
Eco130I	CCWWGG	1 cut(s)	361
Eco24I	GRGCYC	1 cut(s)	11
Eco31I	GGTCTC	2 cut(s)	279, 419
Eco47I	GGWCC	2 cut(s)	48, 66
Eco52I	CGGCCG	1 cut(s)	81
Eco53kI	GAGCTC	1 cut(s)	9
Eco88I	CYCGRG	1 cut(s)	25
EcoICRI	GAGCTC	1 cut(s)	9
EcoT14I	CCWWGG	1 cut(s)	361
EcoT38I	GRGCYC	1 cut(s)	11
ErhI	CCWWGG	1 cut(s)	361
FaeI	CATG	2 cut(s)	365, 435
FaiI	YATR	7 cut(s)	169, 294, 363, 375, 388, 390, 433
FalI	AAGNNNNNCTT	2 cut(s)	215, 247
FatI	CATG	2 cut(s)	361, 431
Fnu4HI	GCNGC	1 cut(s)	339
FokI	GGATG	1 cut(s)	119
FriOI	GRGCYC	1 cut(s)	11
Fsp4HI	GCNGC	1 cut(s)	339
GluI	GCNGC	1 cut(s)	339
GsuI	CTGGAG	1 cut(s)	303
HaeIII	GGCC	2 cut(s)	83, 106
HapII	CCGG	3 cut(s)	46, 108, 129
HgaI	GACGC	1 cut(s)	95
Hin1II	CATG	2 cut(s)	365, 435
HincII	GTYRAC	1 cut(s)	194
HindII	GTYRAC	1 cut(s)	194
HinfI	GANTC	4 cut(s)	123, 190, 256, 308
HpaII	CCGG	3 cut(s)	46, 108, 129
HphI	GGTGA	3 cut(s)	165, 317, 391
Hpy166II	GTNNAC	2 cut(s)	194, 240
Hpy188I	TCNGA	1 cut(s)	119
Hpy188III	TCNNGA	3 cut(s)	25, 46, 69
Hpy8I	GTNNAC	2 cut(s)	194, 240
Hpy99I	CGWCG	1 cut(s)	89
HpyAV	CCTTC	1 cut(s)	403
HpyCH4V	TGCA	4 cut(s)	16, 179, 341, 353
HpyF10VI	GCNNNNNNNGC	2 cut(s)	27, 185
HpyF3I	CTNAG	1 cut(s)	426
Hsp92II	CATG	2 cut(s)	365, 435
Kpn2I	TCCGGA	1 cut(s)	45
Kzo9I	GATC	2 cut(s)	114, 200
LmnI	GCTCC	1 cut(s)	14
Lsp1109I	GCAGC	1 cut(s)	325
LweI	GCATC	2 cut(s)	30, 141
MalI	GATC	2 cut(s)	116, 202
MboI	GATC	2 cut(s)	114, 200
MboII	GAAGA	4 cut(s)	32, 132, 235, 344
MhlI	GDGCHC	1 cut(s)	11
MlyI	GAGTC	2 cut(s)	132, 199
MnlI	CCTC	1 cut(s)	421
MroI	TCCGGA	1 cut(s)	45
MseI	TTAA	1 cut(s)	228
MslI	CAYNNNNRTG	1 cut(s)	247
MspI	CCGG	3 cut(s)	46, 108, 129
MspR9I	CCNGG	1 cut(s)	108
MwoI	GCNNNNNNNGC	2 cut(s)	27, 185
NciI	CCSGG	1 cut(s)	108
NcoI	CCATGG	1 cut(s)	361
NdeII	GATC	2 cut(s)	114, 200
NlaIII	CATG	2 cut(s)	365, 435
NlaIV	GGNNCC	1 cut(s)	67
NmeAIII	GCCGAG	1 cut(s)	59
OliI	CACNNNNGTG	1 cut(s)	247
PaeR7I	CTCGAG	1 cut(s)	25
PaqCI	CACCTGC	1 cut(s)	184
PcsI	WCGNNNNNNNCGW	1 cut(s)	93
PfeI	GAWTC	2 cut(s)	256, 308
PkrI	GCNGC	1 cut(s)	340
PleI	GAGTC	2 cut(s)	131, 198
PpsI	GAGTC	2 cut(s)	131, 198
Psp124BI	GAGCTC	1 cut(s)	11
PspN4I	GGNNCC	1 cut(s)	67
PspPI	GGNCC	3 cut(s)	48, 66, 105
RsaI	GTAC	2 cut(s)	101, 347
RsaNI	GTAC	2 cut(s)	100, 346
RseI	CAYNNNNRTG	1 cut(s)	247
Rsr2I	CGGWCCG	1 cut(s)	48
RsrII	CGGWCCG	1 cut(s)	48
SacI	GAGCTC	1 cut(s)	11
SaqAI	TTAA	1 cut(s)	228
SatI	GCNGC	1 cut(s)	339
Sau3AI	GATC	2 cut(s)	114, 200
Sau96I	GGNCC	3 cut(s)	48, 66, 105
ScaI	AGTACT	1 cut(s)	347
SchI	GAGTC	2 cut(s)	132, 199
ScrFI	CCNGG	1 cut(s)	108
SduI	GDGCHC	1 cut(s)	11
SetI	ASST	4 cut(s)	11, 162, 178, 340
SfaNI	GCATC	2 cut(s)	30, 141
Sfr274I	CTCGAG	1 cut(s)	25
SinI	GGWCC	2 cut(s)	48, 66
SlaI	CTCGAG	1 cut(s)	25
SmiMI	CAYNNNNRTG	1 cut(s)	247
SmlI	CTYRAG	1 cut(s)	25
SmoI	CTYRAG	1 cut(s)	25
SsiI	CCGC	3 cut(s)	51, 151, 312
SstI	GAGCTC	1 cut(s)	11
StyD4I	CCNGG	1 cut(s)	106
StyI	CCWWGG	1 cut(s)	361
TaqI	TCGA	2 cut(s)	26, 96
TatI	WGTACW	2 cut(s)	99, 345
TfiI	GAWTC	2 cut(s)	256, 308
Tru1I	TTAA	1 cut(s)	228
Tru9I	TTAA	1 cut(s)	228
TseI	GCWGC	1 cut(s)	338
TspDTI	ATGAA	1 cut(s)	156
VpaK11BI	GGWCC	2 cut(s)	48, 66
XcmI	CCANNNNNNNNNTGG	1 cut(s)	267
XhoI	CTCGAG	1 cut(s)	25
ZrmI	AGTACT	1 cut(s)	347

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.