Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0002607

Physical Location & Seq

Genomic Coordinates Reverse (-)

22581924 .. 22584816

Gene Structure 2893 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G219700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 468 bp

ATGGCGAGCTCTCTGCAACGCTTATCGAGCCATGCTCGTCTTCTCCGAACCTCGGTTGCCTCAGGGTCCAGACCATTCTCGGCCGACGCTTTGGTTGAGTACATGCCCGGCGAGATCGGGAAGGTCTCTGGCATTCCAGATGAGCATCTTCGCAGGAGGGTTGTAATATACTCACCTGCAAGAACTGCGAGTCAGCAAGGATCAGGAAAAGTTGGGAAGTGGAAAATCAACTTTGTGTCCACACAAAAGTGGGAGAATCCATTGATGGGCTGGACTTCAACTGGTGACCCGTATGCCCATGTTGGCGATTCAACACTGGGTTTTGACAGCGAAGAAGCTGCAAAGTCCTTTGCAGAGAGACATGGTTGGGATTATGTGGTTAAAAAGCGGCAAACGCCATTATTGAGGGTGAAGGCGTATGCAGACAACTTCAAGTTCAAGGGCCTCCCTAAAACTGAGGAGGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003954 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005746 GO:0005747 GO:0006950 GO:0006970 GO:0008137 GO:0008150 GO:0008152 GO:0009266 GO:0009409 GO:0009628 GO:0009631 GO:0016020 GO:0016491 GO:0016651 GO:0016655 GO:0019866 GO:0030964 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0032991 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0045271 GO:0046872 GO:0046914 GO:0050136 GO:0050896 GO:0050897 GO:0055114 GO:0070469 GO:0098796 GO:0098798 GO:0098800 GO:0098803 GO:1902494 GO:1990204

KEGG Pathways

Metabolic & Signaling

ko00190 ko01100 ko04714 ko04723 ko04932 ko05010 ko05012 ko05016 map00190 map01100 map04714 map04723 map04932 map05010 map05012 map05016

Pfam Domains

Protein Families

ETC_C1_NDUFA4

Protein Analysis

156

Amino Acids

17.2

Weight (kDa)

9.73

Isoelectric Point (pI)

48.22

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002607)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G67590
fragaria_vesca	FvH4_1g17800 FvH4_2g32930
malus_domestica	MD02G1187000.v1.1 MD08G1080900.v1.1 MD15G1067900.v1.1 MD15G1298100.v1.1
prunus_persica	Prupe.1G421800_v2.0.a1 Prupe.1G421800_v2.0.a1 Prupe.1G421800_v2.0.a1 Prupe.1G421800_v2.0.a1 Prupe.6G219700_v2.0.a1 Prupe.6G219700_v2.0.a1
pyrus_communis	pycom02g15200 pycom08g06670 pycom15g06430 pycom15g26080
rosa_chinensis	RchiOBHm_Chr2g0108251 RchiOBHm_Chr6g0309771
rosa_laevigata	RLG00000010537 RLG00000017650
rosa_multiflora	Rmu_sc0007406.1_g000008 Rmu_sc0013358.1_g000002 Rmu_ssc0000373.1_g000009
rosa_roxburghii	Rroxscaffold_2G00135450 Rroxscaffold_7G00159200
rosa_rugosa	Rorug02G0151500 Rorug02G0151600.1 Rorug06G0374300 Rorug06G0374400
rosa_samantha	Rh2AG200000 Rh2BG212700 Rh2CG204700 Rh2DG207600 Rh6AG487900 Rh6BG497500 Rh6CG502300 Rh6DG488500
rosa_wichuraiana	Rw2G015920 Rw6G042490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	184
Acc36I	ACCTGC	1 cut(s)	184
AciI	CCGC	1 cut(s)	388
AclWI	GGATC	1 cut(s)	208
AcoI	YGGCCR	1 cut(s)	81
AfaI	GTAC	1 cut(s)	101
AfiI	CCNNNNNNNGG	2 cut(s)	52, 266
AgsI	TTSAA	4 cut(s)	279, 312, 433, 439
AleI	CACNNNNGTG	1 cut(s)	247
AluBI	AGCT	2 cut(s)	9, 338
AluI	AGCT	2 cut(s)	9, 338
Alw21I	GWGCWC	1 cut(s)	11
Alw26I	GTCTC	2 cut(s)	130, 352
AlwI	GGATC	1 cut(s)	208
AoxI	GGCC	2 cut(s)	81, 442
ApeKI	GCWGC	1 cut(s)	338
AspS9I	GGNCC	2 cut(s)	66, 442
AsuC2I	CCSGG	1 cut(s)	108
AsuHPI	GGTGA	3 cut(s)	165, 296, 421
AvaII	GGWCC	1 cut(s)	66
AxyI	CCTNAGG	1 cut(s)	61
BanII	GRGCYC	1 cut(s)	11
BbsI	GAAGAC	1 cut(s)	32
Bbv12I	GWGCWC	1 cut(s)	11
BbvI	GCAGC	1 cut(s)	325
BccI	CCATC	1 cut(s)	259
BcgI	CGANNNNNNTGC	3 cut(s)	29, 320, 354
BcnI	CCSGG	1 cut(s)	108
BcoDI	GTCTC	2 cut(s)	130, 352
BfuAI	ACCTGC	1 cut(s)	184
BisI	GCNGC	2 cut(s)	339, 389
BlsI	GCNGC	2 cut(s)	340, 390
Bme1390I	CCNGG	1 cut(s)	108
Bme18I	GGWCC	1 cut(s)	66
BmgT120I	GGNCC	2 cut(s)	66, 442
BmiI	GGNNCC	1 cut(s)	67
BmrFI	CCNGG	1 cut(s)	108
BmrI	ACTGGG	1 cut(s)	326
BmsI	GCATC	1 cut(s)	154
BmuI	ACTGGG	1 cut(s)	326
BpiI	GAAGAC	1 cut(s)	32
BplI	GAGNNNNNCTC	2 cut(s)	19, 51
BpuMI	CCSGG	1 cut(s)	108
BsaBI	GATNNNNATC	1 cut(s)	144
BsaI	GGTCTC	1 cut(s)	130
BsaJI	CCNNGG	1 cut(s)	51
Bsc4I	CCNNNNNNNGG	2 cut(s)	52, 266
Bse1I	ACTGG	2 cut(s)	286, 321
Bse21I	CCTNAGG	1 cut(s)	61
Bse8I	GATNNNNATC	1 cut(s)	144
BseDI	CCNNGG	1 cut(s)	51
BseJI	GATNNNNATC	1 cut(s)	144
BseLI	CCNNNNNNNGG	2 cut(s)	52, 266
BseMII	CTCAG	2 cut(s)	75, 447
BseNI	ACTGG	2 cut(s)	286, 321
BseX3I	CGGCCG	1 cut(s)	81
BseXI	GCAGC	1 cut(s)	325
Bsh1285I	CGRYCG	1 cut(s)	84
BshFI	GGCC	2 cut(s)	83, 444
BsiEI	CGRYCG	1 cut(s)	84
BsiHKAI	GWGCWC	1 cut(s)	11
BsiSI	CCGG	1 cut(s)	108
BslI	CCNNNNNNNGG	2 cut(s)	52, 266
BsmAI	GTCTC	2 cut(s)	130, 352
BsmI	GAATGC	1 cut(s)	132
BsnI	GGCC	2 cut(s)	83, 444
Bso31I	GGTCTC	1 cut(s)	130
Bsp1286I	GDGCHC	1 cut(s)	11
Bsp143I	GATC	2 cut(s)	114, 200
BspACI	CCGC	1 cut(s)	388
BspANI	GGCC	2 cut(s)	83, 444
BspCNI	CTCAG	2 cut(s)	74, 448
BspLI	GGNNCC	1 cut(s)	67
BspMI	ACCTGC	1 cut(s)	184
BspPI	GGATC	1 cut(s)	208
BspTNI	GGTCTC	1 cut(s)	130
BsrI	ACTGG	2 cut(s)	286, 321
BssECI	CCNNGG	1 cut(s)	51
BssMI	GATC	2 cut(s)	114, 200
BstAPI	GCANNNNNTGC	1 cut(s)	185
BstC8I	GCNNGC	1 cut(s)	7
BstDEI	CTNAG	2 cut(s)	61, 456
BstEII	GGTNACC	1 cut(s)	284
BstKTI	GATC	2 cut(s)	117, 203
BstMAI	GTCTC	2 cut(s)	130, 352
BstMBI	GATC	2 cut(s)	114, 200
BstMCI	CGRYCG	1 cut(s)	84
BstMWI	GCNNNNNNNGC	3 cut(s)	27, 185, 394
BstNSI	RCATGY	1 cut(s)	106
BstPI	GGTNACC	1 cut(s)	284
BstSCI	CCNGG	1 cut(s)	106
BstV1I	GCAGC	1 cut(s)	325
BstV2I	GAAGAC	1 cut(s)	32
BstZI	CGGCCG	1 cut(s)	81
Bsu36I	CCTNAGG	1 cut(s)	61
BsuRI	GGCC	2 cut(s)	83, 444
BtsIMutI	CAGTG	1 cut(s)	314
BveI	ACCTGC	1 cut(s)	184
Cac8I	GCNNGC	1 cut(s)	7
Cfr13I	GGNCC	2 cut(s)	66, 442
CseI	GACGC	1 cut(s)	95
Csp6I	GTAC	1 cut(s)	100
CviAII	CATG	4 cut(s)	32, 103, 299, 362
CviJI	RGCY	7 cut(s)	9, 30, 83, 270, 338, 444, 464
CviKI_1	RGCY	7 cut(s)	9, 30, 83, 270, 338, 444, 464
CviQI	GTAC	1 cut(s)	100
DdeI	CTNAG	2 cut(s)	61, 456
DpnI	GATC	2 cut(s)	116, 202
DpnII	GATC	2 cut(s)	114, 200
EaeI	YGGCCR	1 cut(s)	81
EagI	CGGCCG	1 cut(s)	81
Ecl136II	GAGCTC	1 cut(s)	9
EclXI	CGGCCG	1 cut(s)	81
Eco24I	GRGCYC	1 cut(s)	11
Eco31I	GGTCTC	1 cut(s)	130
Eco47I	GGWCC	1 cut(s)	66
Eco52I	CGGCCG	1 cut(s)	81
Eco53kI	GAGCTC	1 cut(s)	9
Eco81I	CCTNAGG	1 cut(s)	61
Eco91I	GGTNACC	1 cut(s)	284
EcoICRI	GAGCTC	1 cut(s)	9
EcoO109I	RGGNCCY	1 cut(s)	442
EcoO65I	GGTNACC	1 cut(s)	284
EcoT38I	GRGCYC	1 cut(s)	11
FaeI	CATG	4 cut(s)	35, 106, 302, 365
FaiI	YATR	8 cut(s)	33, 104, 169, 294, 300, 363, 375, 420
FatI	CATG	4 cut(s)	31, 102, 298, 361
Fnu4HI	GCNGC	2 cut(s)	339, 389
FriOI	GRGCYC	1 cut(s)	11
Fsp4HI	GCNGC	2 cut(s)	339, 389
GluI	GCNGC	2 cut(s)	339, 389
HaeIII	GGCC	2 cut(s)	83, 444
HapII	CCGG	1 cut(s)	108
HgaI	GACGC	1 cut(s)	95
Hin1II	CATG	4 cut(s)	35, 106, 302, 365
HinfI	GANTC	3 cut(s)	190, 256, 308
HpaII	CCGG	1 cut(s)	108
HphI	GGTGA	3 cut(s)	165, 296, 421
Hpy166II	GTNNAC	1 cut(s)	240
Hpy188I	TCNGA	1 cut(s)	47
Hpy188III	TCNNGA	4 cut(s)	69, 118, 137, 204
Hpy8I	GTNNAC	1 cut(s)	240
Hpy99I	CGWCG	1 cut(s)	89
HpyAV	CCTTC	2 cut(s)	115, 406
HpyCH4V	TGCA	5 cut(s)	16, 179, 341, 353, 422
HpyF10VI	GCNNNNNNNGC	3 cut(s)	27, 185, 394
HpyF3I	CTNAG	2 cut(s)	61, 456
Hsp92II	CATG	4 cut(s)	35, 106, 302, 365
Kzo9I	GATC	2 cut(s)	114, 200
Lsp1109I	GCAGC	1 cut(s)	325
LweI	GCATC	1 cut(s)	154
MaeIII	GTNAC	1 cut(s)	284
MalI	GATC	2 cut(s)	116, 202
MboI	GATC	2 cut(s)	114, 200
MboII	GAAGA	3 cut(s)	32, 140, 344
MhlI	GDGCHC	1 cut(s)	11
MlyI	GAGTC	1 cut(s)	199
MnlI	CCTC	7 cut(s)	61, 70, 150, 399, 451, 454, 455
MseI	TTAA	1 cut(s)	381
MslI	CAYNNNNRTG	1 cut(s)	247
MspI	CCGG	1 cut(s)	108
MspR9I	CCNGG	1 cut(s)	108
Mva1269I	GAATGC	1 cut(s)	132
MwoI	GCNNNNNNNGC	3 cut(s)	27, 185, 394
NciI	CCSGG	1 cut(s)	108
NdeII	GATC	2 cut(s)	114, 200
NlaIII	CATG	4 cut(s)	35, 106, 302, 365
NlaIV	GGNNCC	1 cut(s)	67
NmeAIII	GCCGAG	1 cut(s)	59
NmuCI	GTSAC	1 cut(s)	284
NspI	RCATGY	1 cut(s)	106
OliI	CACNNNNGTG	1 cut(s)	247
PaqCI	CACCTGC	1 cut(s)	184
PcsI	WCGNNNNNNNCGW	1 cut(s)	43
PctI	GAATGC	1 cut(s)	132
PfeI	GAWTC	2 cut(s)	256, 308
PkrI	GCNGC	2 cut(s)	340, 390
PleI	GAGTC	1 cut(s)	198
PpsI	GAGTC	1 cut(s)	198
Psp124BI	GAGCTC	1 cut(s)	11
PspEI	GGTNACC	1 cut(s)	284
PspN4I	GGNNCC	1 cut(s)	67
PspPI	GGNCC	2 cut(s)	66, 442
RsaI	GTAC	1 cut(s)	101
RsaNI	GTAC	1 cut(s)	100
RseI	CAYNNNNRTG	1 cut(s)	247
SacI	GAGCTC	1 cut(s)	11
SaqAI	TTAA	1 cut(s)	381
SatI	GCNGC	2 cut(s)	339, 389
Sau3AI	GATC	2 cut(s)	114, 200
Sau96I	GGNCC	2 cut(s)	66, 442
SchI	GAGTC	1 cut(s)	199
ScrFI	CCNGG	1 cut(s)	108
SduI	GDGCHC	1 cut(s)	11
SetI	ASST	5 cut(s)	11, 53, 126, 178, 340
SfaNI	GCATC	1 cut(s)	154
SinI	GGWCC	1 cut(s)	66
SmiMI	CAYNNNNRTG	1 cut(s)	247
SsiI	CCGC	1 cut(s)	388
SstI	GAGCTC	1 cut(s)	11
StyD4I	CCNGG	1 cut(s)	106
TaqI	TCGA	1 cut(s)	26
TatI	WGTACW	1 cut(s)	99
TauI	GCSGC	1 cut(s)	391
TfiI	GAWTC	2 cut(s)	256, 308
Tru1I	TTAA	1 cut(s)	381
Tru9I	TTAA	1 cut(s)	381
TscAI	CASTG	1 cut(s)	321
TseFI	GTSAC	1 cut(s)	284
TseI	GCWGC	1 cut(s)	338
Tsp45I	GTSAC	1 cut(s)	284
TspRI	CASTG	1 cut(s)	321
VpaK11BI	GGWCC	1 cut(s)	66
XceI	RCATGY	1 cut(s)	106
XcmI	CCANNNNNNNNNTGG	1 cut(s)	267

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.