Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0002607

Physical Location & Seq

Genomic Coordinates Reverse (-)

3938265 .. 3939786

Gene Structure 1522 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g06430.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 489 bp

ATGGCGCGACCTCTACGACACGGCTTCAACATCGCCCGAGCGCACGTGCTTTCGCGGCCGCGATGGGCGTCGTCGCAGTCAGCGGAGGCACTGGTGGAGGTCAAAGTCCCCGACATAGGCATGATATCCGGAATCCCCGAACAGCATCTCCGACGAAGGGTTATAATCTATTCGCCTGCTCGAACTGCGACCCAACAAGGTTCTGGGAAAGTCGGGAAATGGAAGATTAATTTTCTTTCGACGCAAAAGTGGGAAAACCCATTGATGGGCTGGACATCTACAGGTGATCCGTACGCTAATGTTGGTGAGGCAGGACTGACTTTTGAGAGTGAAGAAGCTGCAAAGGCATTTGCTGAGAAACATGGCTGGGATTATACGGTCAGGAAGCGTCACACACCACTTTTGAAGGCTAAGGCATATGCAGACAACTTCAAGTGGAAGGGCCCTGATAAGAGCGAGAAGACTGCAGCTGATGCTGCAAACATCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00190 ko01100 ko04714 ko04723 ko04932 ko05010 ko05012 ko05016 map00190 map01100 map04714 map04723 map04932 map05010 map05012 map05016

Pfam Domains

Protein Families

ETC_C1_NDUFA4

Protein Analysis

163

Amino Acids

18.06

Weight (kDa)

9.89

Isoelectric Point (pI)

43.39

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002607)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G67590
fragaria_vesca	FvH4_1g17800 FvH4_2g32930
malus_domestica	MD02G1187000.v1.1 MD08G1080900.v1.1 MD15G1067900.v1.1 MD15G1298100.v1.1
prunus_persica	Prupe.1G421800_v2.0.a1 Prupe.1G421800_v2.0.a1 Prupe.1G421800_v2.0.a1 Prupe.1G421800_v2.0.a1 Prupe.6G219700_v2.0.a1 Prupe.6G219700_v2.0.a1
pyrus_communis	pycom02g15200 pycom08g06670 pycom15g06430 pycom15g26080
rosa_chinensis	RchiOBHm_Chr2g0108251 RchiOBHm_Chr6g0309771
rosa_laevigata	RLG00000010537 RLG00000017650
rosa_multiflora	Rmu_sc0007406.1_g000008 Rmu_sc0013358.1_g000002 Rmu_ssc0000373.1_g000009
rosa_roxburghii	Rroxscaffold_2G00135450 Rroxscaffold_7G00159200
rosa_rugosa	Rorug02G0151500 Rorug02G0151600.1 Rorug06G0374300 Rorug06G0374400
rosa_samantha	Rh2AG200000 Rh2BG212700 Rh2CG204700 Rh2DG207600 Rh6AG487900 Rh6BG497500 Rh6CG502300 Rh6DG488500
rosa_wichuraiana	Rw2G015920 Rw6G042490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	164
AccII	CGCG	3 cut(s)	7, 55, 61
AccIII	TCCGGA	1 cut(s)	128
AciI	CCGC	3 cut(s)	55, 59, 83
AclWI	GGATC	1 cut(s)	281
AcoI	YGGCCR	1 cut(s)	56
AcvI	CACGTG	1 cut(s)	46
AcyI	GRCGYC	1 cut(s)	68
AfaI	GTAC	1 cut(s)	293
AfiI	CCNNNNNNNGG	4 cut(s)	116, 157, 265, 266
AgsI	TTSAA	3 cut(s)	28, 406, 433
AloI	GAACNNNNNNTCC	2 cut(s)	132, 164
AluBI	AGCT	2 cut(s)	338, 470
AluI	AGCT	2 cut(s)	338, 470
AlwI	GGATC	1 cut(s)	281
Ama87I	CYCGRG	1 cut(s)	36
Aor13HI	TCCGGA	1 cut(s)	128
AoxI	GGCC	2 cut(s)	56, 442
ApaI	GGGCCC	1 cut(s)	446
ApeKI	GCWGC	3 cut(s)	338, 467, 476
AseI	ATTAAT	1 cut(s)	228
AspLEI	GCGC	2 cut(s)	7, 43
AspS9I	GGNCC	2 cut(s)	442, 443
AsuHPI	GGTGA	2 cut(s)	296, 317
AvaI	CYCGRG	1 cut(s)	36
BaeGI	GKGCMC	1 cut(s)	446
BanII	GRGCYC	1 cut(s)	446
BbrPI	CACGTG	1 cut(s)	46
BbsI	GAAGAC	1 cut(s)	467
BbvI	GCAGC	3 cut(s)	325, 463, 479
BccI	CCATC	2 cut(s)	57, 259
BceAI	ACGGC	1 cut(s)	37
BcgI	CGANNNNNNTGC	2 cut(s)	446, 480
BfmI	CTRYAG	2 cut(s)	279, 465
BisI	GCNGC	5 cut(s)	56, 59, 339, 468, 477
BlsI	GCNGC	5 cut(s)	57, 60, 340, 469, 478
BmeT110I	CYCGRG	1 cut(s)	36
BmgT120I	GGNCC	2 cut(s)	442, 443
BmiI	GGNNCC	1 cut(s)	444
BmsI	GCATC	2 cut(s)	154, 463
BpiI	GAAGAC	1 cut(s)	467
Bpu10I	CCTNAGC	1 cut(s)	411
BsaAI	YACGTR	1 cut(s)	46
BsaHI	GRCGYC	1 cut(s)	68
BsaWI	WCCGGW	1 cut(s)	128
BsaXI	ACNNNNNCTCC	2 cut(s)	132, 162
Bsc4I	CCNNNNNNNGG	4 cut(s)	116, 157, 265, 266
Bse1I	ACTGG	1 cut(s)	96
BseAI	TCCGGA	1 cut(s)	128
BseLI	CCNNNNNNNGG	4 cut(s)	116, 157, 265, 266
BseMII	CTCAG	1 cut(s)	345
BseNI	ACTGG	1 cut(s)	96
BseSI	GKGCMC	1 cut(s)	446
BseX3I	CGGCCG	1 cut(s)	56
BseXI	GCAGC	3 cut(s)	325, 463, 479
BseYI	CCCAGC	1 cut(s)	366
Bsh1236I	CGCG	3 cut(s)	7, 55, 61
Bsh1285I	CGRYCG	1 cut(s)	59
BshFI	GGCC	2 cut(s)	58, 444
BsiEI	CGRYCG	1 cut(s)	59
BsiHKCI	CYCGRG	1 cut(s)	36
BsiSI	CCGG	1 cut(s)	129
BsiWI	CGTACG	1 cut(s)	291
BslFI	GGGAC	1 cut(s)	92
BslI	CCNNNNNNNGG	4 cut(s)	116, 157, 265, 266
BsmFI	GGGAC	1 cut(s)	92
BsnI	GGCC	2 cut(s)	58, 444
BsoBI	CYCGRG	1 cut(s)	36
Bsp120I	GGGCCC	1 cut(s)	442
Bsp1286I	GDGCHC	1 cut(s)	446
Bsp13I	TCCGGA	1 cut(s)	128
Bsp143I	GATC	1 cut(s)	286
BspACI	CCGC	3 cut(s)	55, 59, 83
BspANI	GGCC	2 cut(s)	58, 444
BspCNI	CTCAG	1 cut(s)	346
BspEI	TCCGGA	1 cut(s)	128
BspFNI	CGCG	3 cut(s)	7, 55, 61
BspLI	GGNNCC	1 cut(s)	444
BspMAI	CTGCAG	1 cut(s)	469
BspPI	GGATC	1 cut(s)	281
BsrI	ACTGG	1 cut(s)	96
BssMI	GATC	1 cut(s)	286
BssNI	GRCGYC	1 cut(s)	68
Bst4CI	ACNGT	1 cut(s)	379
BstACI	GRCGYC	1 cut(s)	68
BstAPI	GCANNNNNTGC	1 cut(s)	473
BstBAI	YACGTR	1 cut(s)	46
BstC8I	GCNNGC	1 cut(s)	177
BstDEI	CTNAG	2 cut(s)	354, 411
BstFNI	CGCG	3 cut(s)	7, 55, 61
BstHHI	GCGC	2 cut(s)	7, 43
BstKTI	GATC	1 cut(s)	289
BstMBI	GATC	1 cut(s)	286
BstMCI	CGRYCG	1 cut(s)	59
BstMWI	GCNNNNNNNGC	5 cut(s)	55, 185, 344, 473, 476
BstSFI	CTRYAG	2 cut(s)	279, 465
BstSLI	GKGCMC	1 cut(s)	446
BstUI	CGCG	3 cut(s)	7, 55, 61
BstV1I	GCAGC	3 cut(s)	325, 463, 479
BstV2I	GAAGAC	1 cut(s)	467
BstZI	CGGCCG	1 cut(s)	56
BsuRI	GGCC	2 cut(s)	58, 444
BtgZI	GCGATG	2 cut(s)	16, 76
BtsIMutI	CAGTG	1 cut(s)	89
Cac8I	GCNNGC	1 cut(s)	177
CciNI	GCGGCCGC	1 cut(s)	56
CfoI	GCGC	2 cut(s)	7, 43
Cfr13I	GGNCC	2 cut(s)	442, 443
CseI	GACGC	3 cut(s)	57, 250, 377
Csp6I	GTAC	1 cut(s)	292
CviAII	CATG	2 cut(s)	121, 362
CviJI	RGCY	8 cut(s)	24, 58, 270, 338, 366, 410, 444, 470
CviKI_1	RGCY	8 cut(s)	24, 58, 270, 338, 366, 410, 444, 470
CviQI	GTAC	1 cut(s)	292
DdeI	CTNAG	2 cut(s)	354, 411
DpnI	GATC	1 cut(s)	288
DpnII	GATC	1 cut(s)	286
EaeI	YGGCCR	1 cut(s)	56
EagI	CGGCCG	1 cut(s)	56
EclXI	CGGCCG	1 cut(s)	56
Eco24I	GRGCYC	1 cut(s)	446
Eco32I	GATATC	1 cut(s)	126
Eco52I	CGGCCG	1 cut(s)	56
Eco72I	CACGTG	1 cut(s)	46
Eco88I	CYCGRG	1 cut(s)	36
EcoO109I	RGGNCCY	2 cut(s)	442, 443
EcoRV	GATATC	1 cut(s)	126
EcoT38I	GRGCYC	1 cut(s)	446
FaeI	CATG	2 cut(s)	124, 365
FaiI	YATR	7 cut(s)	116, 122, 164, 363, 375, 418, 420
FaqI	GGGAC	1 cut(s)	92
FatI	CATG	2 cut(s)	120, 361
FauNDI	CATATG	1 cut(s)	418
Fnu4HI	GCNGC	5 cut(s)	56, 59, 339, 468, 477
FriOI	GRGCYC	1 cut(s)	446
Fsp4HI	GCNGC	5 cut(s)	56, 59, 339, 468, 477
GlaI	GCGC	2 cut(s)	6, 42
GluI	GCNGC	5 cut(s)	56, 59, 339, 468, 477
GsaI	CCCAGC	1 cut(s)	370
HaeIII	GGCC	2 cut(s)	58, 444
HapII	CCGG	1 cut(s)	129
HgaI	GACGC	3 cut(s)	57, 250, 377
HhaI	GCGC	2 cut(s)	7, 43
Hin1I	GRCGYC	1 cut(s)	68
Hin1II	CATG	2 cut(s)	124, 365
Hin6I	GCGC	2 cut(s)	5, 41
HinP1I	GCGC	2 cut(s)	5, 41
HinfI	GANTC	1 cut(s)	132
HpaII	CCGG	1 cut(s)	129
HphI	GGTGA	2 cut(s)	296, 317
Hpy188I	TCNGA	2 cut(s)	152, 488
Hpy188III	TCNNGA	3 cut(s)	129, 214, 382
Hpy99I	CGWCG	4 cut(s)	73, 76, 156, 244
HpyAV	CCTTC	3 cut(s)	150, 400, 433
HpyCH4III	ACNGT	1 cut(s)	379
HpyCH4IV	ACGT	1 cut(s)	45
HpyCH4V	TGCA	4 cut(s)	341, 422, 467, 479
HpyF10VI	GCNNNNNNNGC	5 cut(s)	55, 185, 344, 473, 476
HpyF3I	CTNAG	2 cut(s)	354, 411
HpySE526I	ACGT	1 cut(s)	45
Hsp92I	GRCGYC	1 cut(s)	68
Hsp92II	CATG	2 cut(s)	124, 365
HspAI	GCGC	2 cut(s)	5, 41
Kpn2I	TCCGGA	1 cut(s)	128
Kzo9I	GATC	1 cut(s)	286
Lsp1109I	GCAGC	3 cut(s)	325, 463, 479
LweI	GCATC	2 cut(s)	154, 463
MaeII	ACGT	1 cut(s)	45
MaeIII	GTNAC	1 cut(s)	389
MalI	GATC	1 cut(s)	288
MboI	GATC	1 cut(s)	286
MboII	GAAGA	3 cut(s)	235, 344, 472
MhlI	GDGCHC	1 cut(s)	446
MluCI	AATT	1 cut(s)	229
MmeI	TCCRAC	1 cut(s)	175
MnlI	CCTC	4 cut(s)	21, 79, 91, 301
MroI	TCCGGA	1 cut(s)	128
MseI	TTAA	1 cut(s)	228
MslI	CAYNNNNRTG	1 cut(s)	119
MspA1I	CMGCKG	2 cut(s)	83, 470
MspI	CCGG	1 cut(s)	129
MvnI	CGCG	3 cut(s)	7, 55, 61
MwoI	GCNNNNNNNGC	5 cut(s)	55, 185, 344, 473, 476
NdeI	CATATG	1 cut(s)	418
NdeII	GATC	1 cut(s)	286
NlaIII	CATG	2 cut(s)	124, 365
NlaIV	GGNNCC	1 cut(s)	444
NmuCI	GTSAC	1 cut(s)	389
NotI	GCGGCCGC	1 cut(s)	56
PfeI	GAWTC	1 cut(s)	132
Pfl23II	CGTACG	1 cut(s)	291
PkrI	GCNGC	5 cut(s)	57, 60, 340, 469, 478
PmaCI	CACGTG	1 cut(s)	46
PmlI	CACGTG	1 cut(s)	46
Ppu21I	YACGTR	1 cut(s)	46
PshBI	ATTAAT	1 cut(s)	228
PsiI	TTATAA	1 cut(s)	164
PspCI	CACGTG	1 cut(s)	46
PspFI	CCCAGC	1 cut(s)	366
PspLI	CGTACG	1 cut(s)	291
PspN4I	GGNNCC	1 cut(s)	444
PspOMI	GGGCCC	1 cut(s)	442
PspPI	GGNCC	2 cut(s)	442, 443
PstI	CTGCAG	1 cut(s)	469
PvuII	CAGCTG	1 cut(s)	470
RsaI	GTAC	1 cut(s)	293
RsaNI	GTAC	1 cut(s)	292
RseI	CAYNNNNRTG	1 cut(s)	119
SaqAI	TTAA	1 cut(s)	228
SatI	GCNGC	5 cut(s)	56, 59, 339, 468, 477
Sau3AI	GATC	1 cut(s)	286
Sau96I	GGNCC	2 cut(s)	442, 443
SduI	GDGCHC	1 cut(s)	446
SetI	ASST	7 cut(s)	13, 48, 102, 202, 286, 340, 472
SfaNI	GCATC	2 cut(s)	154, 463
SfcI	CTRYAG	2 cut(s)	279, 465
SmiMI	CAYNNNNRTG	1 cut(s)	119
Sse9I	AATT	1 cut(s)	229
SsiI	CCGC	3 cut(s)	55, 59, 83
TaaI	ACNGT	1 cut(s)	379
TaiI	ACGT	1 cut(s)	48
TaqI	TCGA	2 cut(s)	181, 239
TasI	AATT	1 cut(s)	229
TauI	GCSGC	2 cut(s)	58, 61
TfiI	GAWTC	1 cut(s)	132
Tru1I	TTAA	1 cut(s)	228
Tru9I	TTAA	1 cut(s)	228
TscAI	CASTG	1 cut(s)	96
TseFI	GTSAC	1 cut(s)	389
TseI	GCWGC	3 cut(s)	338, 467, 476
Tsp45I	GTSAC	1 cut(s)	389
TspGWI	ACGGA	1 cut(s)	279
TspRI	CASTG	1 cut(s)	96
VspI	ATTAAT	1 cut(s)	228
XcmI	CCANNNNNNNNNTGG	2 cut(s)	200, 267

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.